Andrew V. Uzilov, Ph.D.

Affiliations: 
2013 Biomolecular Engineering and Bioinformatics University of California, Santa Cruz, Santa Cruz, CA, United States 
Area:
Bioinformatics Biology
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"Andrew Uzilov"
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Todd Lowe grad student 2013 UC Santa Cruz
 (Novel applications of high-throughput RNA sequencing: Mapping RNA structure and discovering circular RNAs.)
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Publications

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Lui LM, Uzilov AV, Bernick DL, et al. (2018) Methylation guide RNA evolution in archaea: structure, function and genomic organization of 110 C/D box sRNA families across six Pyrobaculum species. Nucleic Acids Research
Uzilov AV, Underwood JG. (2016) High-Throughput Nuclease Probing of RNA Structures Using FragSeq. Methods in Molecular Biology (Clifton, N.J.). 1490: 105-34
Hakenberg J, Cheng WY, Thomas P, et al. (2016) Integrating 400 million variants from 80,000 human samples with extensive annotations: towards a knowledge base to analyze disease cohorts. Bmc Bioinformatics. 17: 24
Pereira E, Camacho-Vanegas O, Anand S, et al. (2015) Personalized Circulating Tumor DNA Biomarkers Dynamically Predict Treatment Response and Survival In Gynecologic Cancers. Plos One. 10: e0145754
Ma M, Ru Y, Chuang LS, et al. (2015) Disease-associated variants in different categories of disease located in distinct regulatory elements. Bmc Genomics. 16: S3
Underwood JG, Uzilov AV, Katzman S, et al. (2010) FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing. Nature Methods. 7: 995-1001
Bradley RK, Uzilov AV, Skinner ME, et al. (2009) Evolutionary modeling and prediction of non-coding RNAs in Drosophila. Plos One. 4: e6478
Skinner ME, Uzilov AV, Stein LD, et al. (2009) JBrowse: a next-generation genome browser. Genome Research. 19: 1630-8
Klosterman PS, Uzilov AV, Bendaña YR, et al. (2006) XRate: a fast prototyping, training and annotation tool for phylo-grammars. Bmc Bioinformatics. 7: 428
Uzilov AV, Keegan JM, Mathews DH. (2006) Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change. Bmc Bioinformatics. 7: 173
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