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Jianpeng Ma

Affiliations: 
Rice University, Houston, TX 
Area:
General Biophysics, Biomedical Engineering, Biochemistry
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Parents

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Children

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Terence C. Flynn grad student 2004 Rice University
William H. Noon grad student 2004 Rice University
Yinghao Wu grad student 2002-2007 Rice University
Billy K. Poon grad student 2008 Rice University
Athanasios D. Dousis grad student 2010 Rice University
Brian D. Kirk grad student 2012 Rice University
Fengyun Ni grad student 2013 Rice University
Natalia Pietrosemoli grad student 2013 Rice University

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Publications

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Luo Z, Ni F, Wang Q, et al. (2023) OPUS-DSD: deep structural disentanglement for cryo-EM single-particle analysis. Nature Methods
Xu G, Wang Q, Ma J. (2020) OPUS-Fold: An Open-Source Protein Folding Framework Based on Torsion-Angle Sampling. Journal of Chemical Theory and Computation
Xu G, Wang Q, Ma J. (2020) OPUS-Refine: A Fast Sampling-based Framework for Refining Protein Backbone Torsion Angles and Global Conformation. Journal of Chemical Theory and Computation
Xu G, Ma T, Du J, et al. (2019) OPUS-Rota2: An Improved Fast and Accurate Side-chain Modeling Method. Journal of Chemical Theory and Computation
Xu G, Ma T, Wang Q, et al. (2019) OPUS-SSF: A Side-chain-inclusive Scoring Function for Ranking Protein Structural Models. Protein Science : a Publication of the Protein Society
Xie Q, Wang Z, Ni F, et al. (2019) Structure basis of neutralization by a novel site II/IV antibody against respiratory syncytial virus fusion protein. Plos One. 14: e0210749
Zang T, Ma T, Wang Q, et al. (2018) Improving low-accuracy protein structures using enhanced sampling techniques. The Journal of Chemical Physics. 149: 072319
Ma T, Zang T, Wang Q, et al. (2018) Refining protein structures using enhanced sampling techniques with restraints derived from an ensemble-based model. Protein Science : a Publication of the Protein Society
Lin X, Noel JK, Wang Q, et al. (2018) Atomistic simulations indicate the functional loop-to-coiled-coil transition in influenza hemagglutinin is not downhill. Proceedings of the National Academy of Sciences of the United States of America
Du J, Kirk B, Zeng J, et al. (2018) Three classes of response elements for human PRC2 and MLL1/2-Trithorax complexes. Nucleic Acids Research
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