Thomas E. Cheatham
Affiliations: | Medicinal Chemistry | University of Utah, Salt Lake City, UT |
Area:
Pharmaceutical Chemistry, Biochemistry, General BiophysicsGoogle:
"Thomas Cheatham"Mean distance: (not calculated yet)
Children
Sign in to add trainee| Xiaohui Cang | grad student | 2010 | University of Utah |
| Scott S. Pendley | grad student | 2010 | University of Utah |
| Niel M. Henriksen | grad student | 2008-2013 | University of Utah |
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Publications
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| Love O, Winkler L, Cheatham TE. (2023) van der Waals Parameter Scanning with Amber Nucleic Acid Force Fields: Revisiting Means to Better Capture the RNA/DNA Structure through MD. Journal of Chemical Theory and Computation |
| Case DA, Aktulga HM, Belfon K, et al. (2023) AmberTools. Journal of Chemical Information and Modeling. 63: 6183-6191 |
| Love O, Galindo-Murillo R, Zgarbová M, et al. (2023) Assessing the Current State of Amber Force Field Modifications for DNA─2023 Edition. Journal of Chemical Theory and Computation |
| Winkler L, Cheatham TE. (2023) Benchmarking the Drude Polarizable Force Field Using the r(GACC) Tetranucleotide. Journal of Chemical Information and Modeling |
| Winkler L, Galindo-Murillo R, Cheatham TE. (2023) Structures and Dynamics of DNA Mini-Dumbbells Are Force Field Dependent. Journal of Chemical Theory and Computation |
| Love O, Pacheco Lima MC, Clark C, et al. (2022) Evaluating the accuracy of the AMBER protein force fields in modeling dihydrofolate reductase structures: misbalance in the conformational arrangements of the flexible loop domains. Journal of Biomolecular Structure & Dynamics. 1-15 |
| Galindo-Murillo R, Cheatham TE. (2022) Transient Hoogsteen Base Pairs Observed in Unbiased Molecular Dynamics Simulations of DNA. The Journal of Physical Chemistry Letters. 6283-6287 |
| Rajasekaran T, Freestone GC, Galindo-Murillo R, et al. (2022) Backbone Hydrocarbon-Constrained Nucleic Acids Modulate Hybridization Kinetics for RNA. Journal of the American Chemical Society |
| Galindo-Murillo R, Cheatham TE. (2021) Ethidium bromide interactions with DNA: an exploration of a classic DNA-ligand complex with unbiased molecular dynamics simulations. Nucleic Acids Research |
| Galindo-Murillo R, Cheatham TE. (2019) Lessons learned in atomistic simulation of double-stranded DNA: Solvation and salt concerns [Article v1.0]. Living Journal of Computational Molecular Science. 1 |