Rachel Karchin, Ph.D.

2003 University of California, Santa Cruz, Santa Cruz, CA, United States 
Computer Science, Molecular Biology
"Rachel Karchin"
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Kevin Karplus grad student 2003 UC Santa Cruz
 (Evaluating local structure alphabets for protein structure prediction.)
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Cai B, Li B, Kiga N, et al. (2017) Matching phenotypes to whole genomes: Lessons learned from four iterations of the personal genome project community challenges. Human Mutation
Tokheim C, Bhattacharya R, Niknafs N, et al. (2016) Exome-scale discovery of hotspot mutation regions in human cancer using 3D protein structure. Cancer Research
Masica DL, Karchin R. (2016) Towards Increasing the Clinical Relevance of In Silico Methods to Predict Pathogenic Missense Variants. Plos Computational Biology. 12: e1004725
Goes FS, Pirooznia M, Parla JS, et al. (2016) Exome Sequencing of Familial Bipolar Disorder. Jama Psychiatry
Rettig EM, Talbot C, Sausen M, et al. (2016) Whole-Genome Sequencing of Salivary Gland Adenoid Cystic Carcinoma. Cancer Prevention Research (Philadelphia, Pa.)
Oetting WS, Brenner SE, Brookes AJ, et al. (2016) Pathogenicity Interpretation in the Age of Precision Medicine: The 2015 Annual Scientific Meeting of the Human Genome Variation Society. Human Mutation
Roberts NJ, Norris AL, Petersen GM, et al. (2015) Whole genome sequencing defines the genetic heterogeneity of familial pancreatic cancer. Cancer Discovery
Douville C, Masica DL, Stenson PD, et al. (2015) Assessing the Pathogenicity of Insertion and Deletion Variants with the Variant Effect Scoring Tool (VEST-Indel). Human Mutation
Niknafs N, Beleva-Guthrie V, Naiman DQ, et al. (2015) SubClonal Hierarchy Inference from Somatic Mutations: Automatic Reconstruction of Cancer Evolutionary Trees from Multi-region Next Generation Sequencing. Plos Computational Biology. 11: e1004416
Bertotti A, Papp E, Jones S, et al. (2015) The genomic landscape of response to EGFR blockade in colorectal cancer. Nature
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