Saswata Karmakar, Ph.D.
Affiliations: | 2013 | University of Idaho, Moscow, ID, United States |
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Organic ChemistryGoogle:
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Parents
Sign in to add mentorPatrick J. Hrdlicka | grad student | 2013 | University of Idaho | |
(Synthesis and Biophysical Characterization of O2'-Intercalator-Functionalized Oligonucleotides for Mixed-Sequence Recognition of Double -Stranded DNA.) |
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Publications
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Shepard CP, Emehiser RG, Karmakar S, et al. (2022) Factors Impacting Invader-Mediated Recognition of Double-Stranded DNA. Molecules (Basel, Switzerland). 28 |
Emehiser RG, Dhuri K, Shepard C, et al. (2022) Serine-γPNA, Invader probes, and chimeras thereof: three probe chemistries that enable sequence-unrestricted recognition of double-stranded DNA. Organic & Biomolecular Chemistry |
Adhikari SP, Karmakar S, Hrdlicka PJ. (2021) Nicked Invader probes: multistranded and sequence-unrestricted recognition of double-stranded DNA. Organic & Biomolecular Chemistry |
Adhikari SP, Vukelich P, Guenther DC, et al. (2021) Recognition of double-stranded DNA using LNA-modified toehold Invader probes. Organic & Biomolecular Chemistry. 19: 9276-9290 |
Guenther DC, Emehiser RG, Inskeep A, et al. (2020) Impact of non-nucleotidic bulges on recognition of mixed-sequence dsDNA by pyrene-functionalized Invader probes. Organic & Biomolecular Chemistry |
Emehiser RG, Hall E, Guenther DC, et al. (2019) Head-to-head comparison of LNA, γPNA, INA and Invader probes targeting mixed-sequence double-stranded DNA. Organic & Biomolecular Chemistry |
Adhikari SP, Emehiser RG, Karmakar S, et al. (2019) Recognition of mixed-sequence DNA targets using spermine-modified Invader probes. Organic & Biomolecular Chemistry |
Karmakar S, Horrocks T, Gibbons BC, et al. (2019) Synthesis and biophysical characterization of oligonucleotides modified with O2'-alkylated RNA monomers featuring substituted pyrene moieties. Organic & Biomolecular Chemistry. 17: 609-621 |
Hrdlicka PJ, Karmakar S. (2017) 25 years and still going strong: 2'-O-(pyren-1-yl)methylribonucleotides - versatile building blocks for applications in molecular biology, diagnostics and materials science. Organic & Biomolecular Chemistry |
Karmakar S, Guenther DC, Gibbons BC, et al. (2017) Recognition of mixed-sequence DNA using double-stranded probes with interstrand zipper arrangements of O2'-triphenylene- and coronene-functionalized RNA monomers. Organic & Biomolecular Chemistry |