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Ali G. Mokdad, Ph.D.

Affiliations: 
2006 Bowling Green State University, Bowling Green, OH, United States 
Area:
Molecular Biology
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"Ali Mokdad"
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Neocles B. Leontis grad student 2006 Bowling Green State University
 (Developing tools for RNA structural alignment.)

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McGraw AP, Mokdad A, Major F, et al. (2009) Molecular basis of TRAP-5'SL RNA interaction in the Bacillus subtilis trp operon transcription attenuation mechanism. Rna (New York, N.Y.). 15: 55-66
Mokdad A, Frankel AD. (2008) ISFOLD: Structure prediction of base pairs in non-helical RNA motifs from isostericity signatures in their sequence alignments Journal of Biomolecular Structure and Dynamics. 25: 467-472
Sarver M, Zirbel CL, Stombaugh J, et al. (2008) FR3D: Finding local and composite recurrent structural motifs in RNA 3D structures Journal of Mathematical Biology. 56: 215-252
Sponer JE, Réblova K, Mokdad A, et al. (2007) Leading RNA tertiary interactions: structures, energies, and water insertion of A-minor and P-interactions. A quantum chemical view. The Journal of Physical Chemistry. B. 111: 9153-64
Rázga F, Koča J, Mokdad A, et al. (2007) Elastic properties of ribosomal RNA building blocks: Molecular dynamics of the GTPase-associated center rRNA Nucleic Acids Research. 35: 4007-4017
Šponer JE, Réblová K, Mokdad A, et al. (2007) Leading RNA tertiary interactions: Structures, energies, and water insertion of a-minor and p-interactions. A quantum chemical view Journal of Physical Chemistry B. 111: 9153-9164
Mokdad A, Leontis NB. (2006) Ribostral: an RNA 3D alignment analyzer and viewer based on basepair isostericities. Bioinformatics (Oxford, England). 22: 2168-70
Mokdad A, Krasovska MV, Sponer J, et al. (2006) Structural and evolutionary classification of G/U wobble basepairs in the ribosome. Nucleic Acids Research. 34: 1326-41
Sponer J, Mokdad A, Sponer JE, et al. (2003) Unique tertiary and neighbor interactions determine conservation patterns of Cis Watson-Crick A/G base-pairs. Journal of Molecular Biology. 330: 967-78
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