Ali G. Mokdad, Ph.D.
|2006||Bowling Green State University, Bowling Green, OH, United States|
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|Mokdad A, Frankel AD. (2008) ISFOLD: Structure prediction of base pairs in non-helical RNA motifs from isostericity signatures in their sequence alignments Journal of Biomolecular Structure and Dynamics. 25: 467-472|
|Sarver M, Zirbel CL, Stombaugh J, et al. (2008) FR3D: Finding local and composite recurrent structural motifs in RNA 3D structures Journal of Mathematical Biology. 56: 215-252|
|Rázga F, Koča J, Mokdad A, et al. (2007) Elastic properties of ribosomal RNA building blocks: Molecular dynamics of the GTPase-associated center rRNA Nucleic Acids Research. 35: 4007-4017|
|Šponer JE, Réblová K, Mokdad A, et al. (2007) Leading RNA tertiary interactions: Structures, energies, and water insertion of a-minor and p-interactions. A quantum chemical view Journal of Physical Chemistry B. 111: 9153-9164|
|Mokdad A, Leontis NB. (2006) Ribostral: an RNA 3D alignment analyzer and viewer based on basepair isostericities. Bioinformatics (Oxford, England). 22: 2168-70|
|Mokdad A, Krasovska MV, Sponer J, et al. (2006) Structural and evolutionary classification of G/U wobble basepairs in the ribosome. Nucleic Acids Research. 34: 1326-41|
|Sponer J, Mokdad A, Sponer JE, et al. (2003) Unique tertiary and neighbor interactions determine conservation patterns of Cis Watson-Crick A/G base-pairs. Journal of Molecular Biology. 330: 967-78|