Frank DiMaio
Affiliations: | Biochemistry | University of Washington, Seattle, Seattle, WA |
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Publications
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Muenks A, Zepeda S, Zhou G, et al. (2023) Automatic and accurate ligand structure determination guided by cryo-electron microscopy maps. Nature Communications. 14: 1164 |
Lugmayr W, Kotov V, Goessweiner-Mohr N, et al. (2022) StarMap: a user-friendly workflow for Rosetta-driven molecular structure refinement. Nature Protocols |
Cummins MC, Jacobs TM, Teets FD, et al. (2022) AlphaFold accurately predicts distinct conformations based on the oligomeric state of a de novo designed protein. Protein Science : a Publication of the Protein Society. 31: e4368 |
Pavlovicz RE, Park H, DiMaio F. (2020) Efficient consideration of coordinated water molecules improves computational protein-protein and protein-ligand docking discrimination. Plos Computational Biology. 16: e1008103 |
Farrell DP, Anishchenko I, Shakeel S, et al. (2020) Deep learning enables the atomic structure determination of the Fanconi Anemia core complex from cryoEM. Iucrj. 7: 881-892 |
Xu C, Lu P, Gamal El-Din TM, et al. (2020) Computational design of transmembrane pores. Nature |
Basanta B, Bick MJ, Bera AK, et al. (2020) An enumerative algorithm for de novo design of proteins with diverse pocket structures. Proceedings of the National Academy of Sciences of the United States of America |
Bhargava HK, Tabata K, Byck JM, et al. (2020) Structural basis for autophagy inhibition by the human Rubicon-Rab7 complex. Proceedings of the National Academy of Sciences of the United States of America |
Al-Otaibi NS, Taylor AJ, Farrell DP, et al. (2020) The cryo-EM structure of the bacterial flagellum cap complex suggests a molecular mechanism for filament elongation. Nature Communications. 11: 3210 |
Leman JK, Weitzner BD, Lewis SM, et al. (2020) Macromolecular modeling and design in Rosetta: recent methods and frameworks. Nature Methods |