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J. Andrew McCammon

University of California, San Diego, La Jolla, CA 
Statistical mechanics and computational chemistry, with applications to biological systems
"J. Andrew McCammon"

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Cross-listing: Computational Biology Tree


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John M. Deutch grad student 1976 Harvard
 (Hydrodynamics of biopolymers)
Martin Karplus post-doc 1976-1978 Harvard


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Peter Sims research assistant UCSD
Carlos Xavier Hernández research assistant 2012-2012 UCSD
William R Cannon grad student UCSD
Regis Pomes grad student University of Houston
John Tanner grad student UCSD (Neurotree)
Kaihsu Tai grad student 2002 UCSD (Computational Biology Tree)
Eric David Scheeff grad student 2003 UCSD
Jennifer M. Bui grad student 2005 UCSD (Computational Biology Tree)
Dennis Stanley Law grad student 2005 UCSD
Alexander Luke Perryman grad student 2005 UCSD
Julie Schames Pressman grad student 2005 UCSD
Grace Yang grad student 2005 UCSD
Thuy Linh Dinh-Truong grad student 2006 UCSD
John Mongan grad student 2006 UCSD
Jessica M. Swanson grad student 2006 UCSD
David Cerutti grad student 2007 UCSD
Yuhui Cheng grad student 2007 UCSD (Computational Biology Tree)
David Minh grad student 2007 UCSD
Arneh Babakhani grad student 2009 UCSD (Computational Biology Tree)
Jacob Devin Durrant grad student 2010 UCSD
Mikolai Fajer grad student 2011 UCSD
Patricia M. Bauler grad student 2012 UCSD (Computational Biology Tree)
William Sinko grad student 2012 UCSD
Paul M. Gasper grad student 2013 UCSD
Mehrnoosh Arrar grad student 2014 UCSD (Computational Biology Tree)
Patrick G. Blachly grad student 2014 UCSD (Computational Biology Tree)
Christopher T. Lee grad student 2013-2019 UCSD
Frank L. Brown post-doc
Richard H. Henchman post-doc UCSD
Tjerk Straatsma post-doc University of Houston
Rebecca C Wade post-doc (Computational Biology Tree)
Peter M. Kekenes-Huskey post-doc 2010- UCSD
Scott Hayes Northrup post-doc 1979-1980 University of Houston
Jeffry D. Madura post-doc 1986-1990 University of Houston
Thanh N. Truong post-doc 1990-1992 University of Utah
James M. Briggs post-doc 1990-1994 University of Houston, TX
Michael K. Gilson post-doc 1991-1994 University of Houston
Heather A. Carlson post-doc 1997-2000 UCSD
Nathan Baker post-doc 2001-2002 UCSD (Cell Biology Tree)
Yingkai Zhang post-doc 2000-2003 UCSD
Jens E. Nielsen post-doc 2001-2003 Pharmacology, UCSD
Joachim Dzubiella post-doc 2004-2006 UCSD
Cameron Mura post-doc 2003-2007 UCSD
Ilja V. Khavrutskii post-doc 2007-2009 UCSD
Giulia Palermo post-doc 2016-2018 UCSD
Jung-Hsin Lin research scientist 2000-2002 UCSD
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Mindrebo JT, Patel A, Kim WE, et al. (2020) Gating mechanism of elongating β-ketoacyl-ACP synthases. Nature Communications. 11: 1727
Lee CT, Laughlin JG, Angliviel de La Beaumelle N, et al. (2020) 3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries. Plos Computational Biology. 16: e1007756
Lee CT, Laughlin JG, Moody JB, et al. (2020) An Open-Source Mesh Generation Platform for Biophysical Modeling Using Realistic Cellular Geometries. Biophysical Journal
Huber GA, McCammon JA. (2019) Brownian Dynamics Simulations of Biological Molecules. Trends in Chemistry. 1: 727-738
Aboelkassem Y, McCabe KJ, Huber GA, et al. (2019) A Stochastic Multiscale Model of Cardiac Thin Filament Activation Using Brownian-Langevin Dynamics. Biophysical Journal
Palermo G, Ricci CG, McCammon JA. (2019) The invisible dance of CRISPR-Cas9. Simulations unveil the molecular side of the gene-editing revolution. Physics Today. 72: 30-36
Lee CT, Moody JB, Amaro RE, et al. (2019) The Implementation of the Colored Abstract Simplicial Complex and its Application to Mesh Generation. Acm Transactions On Mathematical Software. Association For Computing Machinery. 45
Sztain-Pedone T, Bartholow T, McCammon JA, et al. (2019) Shifting the Hydrolysis Equilibrium of Substrate Loaded Acyl Carrier Proteins. Biochemistry
Zhou S, Weiß RG, Cheng LT, et al. (2019) Variational implicit-solvent predictions of the dry-wet transition pathways for ligand-receptor binding and unbinding kinetics. Proceedings of the National Academy of Sciences of the United States of America
Sztain T, Patel A, Lee DJ, et al. (2019) One atom matters: modifying the thioester linkage affects structure of the acyl carrier protein. Angewandte Chemie (International Ed. in English)
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