Derek J. Cashman, Ph.D.
Affiliations: | 2003 | Virginia Commonwealth University, Richmond, VA, United States |
Area:
Pharmaceutical Chemistry, Biochemistry, Molecular BiologyGoogle:
"Derek Cashman"Mean distance: (not calculated yet)
Parents
Sign in to add mentor| Glen Eugene Kellogg | grad student | 2003 | VCU | |
| (A computational model for targeting nucleic acids: Estimating changes in free energy of drugs in complex with RNA and variable sequences of DNA.) | ||||
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Publications
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| Zaharias S, Zhang Z, Davis K, et al. (2021) Intrinsically disordered electronegative clusters improve stability and binding specificity of RNA-binding proteins. The Journal of Biological Chemistry. 100945 |
| Kapoor K, Cashman DJ, Nientimp L, et al. (2017) Binding Mechanisms of Electron Transport Proteins with Cyanobacterial Photosystem I: An Integrated Computational and Experimental Model. The Journal of Physical Chemistry. B |
| Cashman DJ, Zhu T, Simmerman RF, et al. (2014) Molecular interactions between photosystem I and ferredoxin: an integrated energy frustration and experimental model. Journal of Molecular Recognition : Jmr. 27: 597-608 |
| Cashman DJ, Ortega DR, Zhulin IB, et al. (2013) Homology modeling of the CheW coupling protein of the chemotaxis signaling complex. Plos One. 8: e70705 |
| Cashman DJ, Mamonov AB, Bhatt D, et al. (2011) Thermal motions of the E. coli glucose-galactose binding protein studied using well-sampled semi-atomistic simulations Current Topics in Medicinal Chemistry. 11: 211-220 |
| Dettler JM, Buscaglia R, Cui J, et al. (2010) Biophysical characterization of an ensemble of intramolecular i-motifs formed by the human c-MYC NHE III1 P1 promoter mutant sequence. Biophysical Journal. 99: 561-7 |
| Mamonov AB, Bhatt D, Cashman DJ, et al. (2009) General library-based Monte Carlo technique enables equilibrium sampling of semi-atomistic protein models. The Journal of Physical Chemistry. B. 113: 10891-904 |
| Cashman DJ, Buscaglia R, Freyer MW, et al. (2008) Molecular modeling and biophysical analysis of the c-MYC NHE-III1 silencer element. Journal of Molecular Modeling. 14: 93-101 |
| Freyer MW, Buscaglia R, Kaplan K, et al. (2007) Biophysical studies of the c-MYC NHE III1 promoter: model quadruplex interactions with a cationic porphyrin. Biophysical Journal. 92: 2007-15 |
| Freyer MW, Buscaglia R, Cashman D, et al. (2007) Binding of netropsin to several DNA constructs: Evidence for at least two different 1:1 complexes formed from an -AATT-containing ds-DNA construct and a single minor groove binding ligand Biophysical Chemistry. 126: 186-196 |