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James M. Berger

Affiliations: 
Biophysics and Biophysical Chemistry Johns Hopkins University, Baltimore, MD 
 University of California, Berkeley, Berkeley, CA, United States 
Area:
Biochemistry, Biophysics and Structural Biology
Website:
http://biophysics.med.jhmi.edu/BIOPHYS/berger.html
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"James Berger"
Bio:

http://www.nasonline.org/member-directory/members/20029832.html
http://pmcb.jhu.edu/faculty/berger-profile.html
http://pmcb.jhu.edu/faculty/berger-profile.html
http://mcb.berkeley.edu/index.php?option=com_mcbfaculty&name=bergerj
http://berger.berkeley.edu/Home.html

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Parents

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Stephen C. Harrison grad student 1995 Harvard
James C. Wang grad student 1995 Harvard
 (Structural determination of a 92 kDa fragment of yeast topoisomerase II by X-ray crystallography at 2.7 Å resolution)

Children

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Seychelle M. Vos grad student UC Berkeley
Cary Kai-Kwang Lai grad student 2003 UC Berkeley
Rachel Fennell Fezzie grad student 2004 UC Berkeley
Kevin Daniel Corbett grad student 2005 UC Berkeley
Jan P. Erzberger grad student 2005 UC Berkeley
Andrew James Antczak grad student 2007 UC Berkeley
Jacob Ellery Corn grad student 2007 UC Berkeley
Andrew Edward Douglas grad student 2007 UC Berkeley
Ken C. Dong grad student 2008 UC Berkeley
Melissa L. Mott grad student 2009 UC Berkeley
Allyn J. Schoeffler grad student 2009 UC Berkeley
Nathan David Thomsen grad student 2010 UC Berkeley
Richard Untermayer Rymer grad student 2012 UC Berkeley
Bryan H. Schmidt grad student 2012 UC Berkeley
Elsa Marie Tretter grad student 2012 UC Berkeley
Melania Slawa Strycharska grad student 2013 UC Berkeley
Kevin Jude post-doc UC Berkeley
James L. Keck post-doc 1999-2001 UC Berkeley
Daniel Scott Classen post-doc 2001-2005 UC Berkeley
Emmanuel Skordalakes post-doc 2001-2007 UC Berkeley
Philip J. Kranzusch post-doc 2012-2016 UC Berkeley (Microtree)

Collaborators

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Publications

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Liu C, Hauk G, Yan Q, et al. (2024) Structure of exonuclease VII. Proceedings of the National Academy of Sciences of the United States of America. 121: e2319644121
Bandak AF, Blower TR, Nitiss KC, et al. (2023) Using energy to go downhill-a genoprotective role for ATPase activity in DNA topoisomerase II. Nucleic Acids Research
Lee J, Wu M, Inman JT, et al. (2023) Chromatinization modulates topoisomerase II processivity. Nature Communications. 14: 6844
Lee J, Wu M, Inman JT, et al. (2023) Chromatinization Modulates Topoisomerase II Processivity. Biorxiv : the Preprint Server For Biology
Bandak AF, Blower TR, Nitiss KC, et al. (2023) Using energy to go downhill - a genoprotective role for ATPase activity in DNA topoisomerase II. Biorxiv : the Preprint Server For Biology
Bandak AF, Blower TR, Nitiss KC, et al. (2023) Naturally mutagenic sequence diversity in a human type II topoisomerase. Proceedings of the National Academy of Sciences of the United States of America. 120: e2302064120
Spínola-Amilibia M, Araújo-Bazán L, de la Gándara Á, et al. (2023) IS21 family transposase cleaved donor complex traps two right-handed superhelical crossings. Nature Communications. 14: 2335
Benning NA, Kæstel-Hansen J, Rashid F, et al. (2023) Dimensional Reduction for Single-Molecule Imaging of DNA and Nucleosome Condensation by Polyamines, HP1α and Ki-67. The Journal of Physical Chemistry. B. 127: 1922-1931
Galvin CJ, Hobson M, Meng JX, et al. (2023) Single-molecule dynamics of DNA gyrase in evolutionarily distant bacteria Mycobacterium tuberculosis and E. coli. The Journal of Biological Chemistry. 103003
Le TT, Wu M, Lee JH, et al. (2023) Etoposide promotes DNA loop trapping and barrier formation by topoisomerase II. Nature Chemical Biology
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