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Arup K. Chakraborty

Affiliations: 
1988-2005 Chemical Engineering University of California, Berkeley, Berkeley, CA, United States 
 2005- Chemical Engineering Massachusetts Institute of Technology, Cambridge, MA, United States 
Area:
cell-cell recognition in immunology, T cell biology, polymers and membranes statistical mechanics
Website:
http://web.mit.edu/cheme/people/profile.html?id=4
Google:
"Arup Chakraborty"
Bio:

http://web.mit.edu/physics/people/faculty/chakraborty_arup.html

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Parents

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Giovanni Astarita grad student 1988 University of Delaware
 (Substituent effects in amine-carbon dioxide reactions)

Children

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Bernhardt L. Trout grad student 1996 UC Berkeley
Aaron J. Golumbfskie grad student 2002 UC Berkeley
Yuko Hori grad student 2003 UC Berkeley
Sung-Joo E. Lee grad student 2003 UC Berkeley
Jason A. Ryder grad student 2003 UC Berkeley
Baron G. Peters grad student 2004 UC Berkeley
Jonathan L. Eide grad student 2005 UC Berkeley
Dennis C. Wylie grad student 2006 UC Berkeley
Jason W. Locasale grad student 2005-2009 MIT (Cell Biology Tree)
Krishna Shrinivas grad student 2015-2020 MIT
Elizabeth L. Read post-doc MIT
Shenshen Wang post-doc MIT (Neurotree)
Aaron R. Dinner post-doc 2001-2003 UC Berkeley
John P Barton post-doc 2012-2017 MIT (Physics Tree)

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Publications

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Schede HH, Natarajan P, Chakraborty AK, et al. (2023) A model for organization and regulation of nuclear condensates by gene activity. Nature Communications. 14: 4152
Natarajan P, Shrinivas K, Chakraborty AK. (2023) A model for cis-regulation of transcriptional condensates and gene expression by proximal lncRNAs. Biophysical Journal
Conti S, Ovchinnikov V, Faris JG, et al. (2022) Multiscale affinity maturation simulations to elicit broadly neutralizing antibodies against HIV. Plos Computational Biology. 18: e1009391
Conti S, Kaczorowski KJ, Song G, et al. (2021) Design of immunogens to elicit broadly neutralizing antibodies against HIV targeting the CD4 binding site. Proceedings of the National Academy of Sciences of the United States of America. 118
Murakowski DK, Barton JP, Peter L, et al. (2021) Adenovirus-vectored vaccine containing multidimensionally conserved parts of the HIV proteome is immunogenic in rhesus macaques. Proceedings of the National Academy of Sciences of the United States of America. 118
Murugan A, Husain K, Rust M, et al. (2021) Roadmap on biology in time varying environments. Physical Biology
Henninger JE, Oksuz O, Shrinivas K, et al. (2020) RNA-Mediated Feedback Control of Transcriptional Condensates. Cell
Zhang TH, Dai L, Barton JP, et al. (2020) Predominance of positive epistasis among drug resistance-associated mutations in HIV-1 protease. Plos Genetics. 16: e1009009
Klein IA, Boija A, Afeyan LK, et al. (2020) Partitioning of cancer therapeutics in nuclear condensates. Science (New York, N.Y.). 368: 1386-1392
Quadeer AA, Barton JP, Chakraborty AK, et al. (2020) Deconvolving mutational patterns of poliovirus outbreaks reveals its intrinsic fitness landscape. Nature Communications. 11: 377
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