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José Nelson Onuchic

Affiliations:	1990-2011	Physics	University of California, San Diego, La Jolla, CA
	2011-	Physics	Rice University, Houston, TX

Area:

Theoretical Biological Physics

Website:

https://chemistry.rice.edu/FacultyDetail.aspx?p=51BE2F2C673C5991

Google:

"José Nelson Onuchic"

Bio:

http://www.nasonline.org/member-directory/members/3012188.html
DOI: 10.1073/pnas.1007425107
https://history.aip.org/phn/11607030.html
http://www.cprit.state.tx.us/funded-grants/cprit-scholars/dr-jose-onuchic
Onuchic, Jose Nelson New aspects of the theory of electron transfer reaction dynamics. Dissertation (Ph.D.), California Institute of Technology (1987).

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Cross-listing: Physics Tree

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Parents

John J. Hopfield	grad student	1987	Caltech (Neurotree)
(New aspects of the theory of electron transfer reaction dynamics)

Children

Peter Leopold	grad student		UCSD
Zhipeng Wang	grad student		(Computational Biology Tree)
Kareem M Mehrabiani	grad student	2015-	Rice University (Physics Tree)
Vitor Barbanti Pereira Leite	grad student	1989-1995	UCSD (Physics Tree)
Marcos R Betancourt	grad student	1992-1995	Rice University (Physics Tree)
Hugh Nymeyer	grad student	2001	UCSD (Physics Tree)
Tongye Shen	grad student	2002	UCSD (Physics Tree)
Margaret Shun Cheung	grad student	2003	UCSD (Physics Tree)
Leslie Lou Chavez	grad student	2005	UCSD (Physics Tree)
Sichun Yang	grad student	2006	UCSD
Paul Charles Whitford	grad student	2009	UCSD (Physics Tree)
Jeffrey Kenneth Noel	grad student	2012	UCSD (Physics Tree)
Xingcheng Lin	grad student	2012-2018	Rice University (Physics Tree)
Steven S. Plotkin	post-doc		Rice University
Joan-Emma Shea	post-doc	1997-2000	Scripps Research Institute
Changbong Hyeon	post-doc	2006-2007	UCSD
Biman Jana	post-doc	2011-2013	Rice University
Ryan R Cheng	post-doc	2013-2022	Rice University

Collaborators

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Publications

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Ng Chau K, George JT, Onuchic JN, et al. (2022) Contact map dependence of a T-cell receptor binding repertoire. Physical Review. E. 106: 014406
Prajapati JD, Onuchic JN, Sanbonmatsu KY. (2022) Exploring the Energy Landscape of Riboswitches Using Collective Variables Based on Tertiary Contacts. Journal of Molecular Biology. 167788
Contessoto VG, Cheng RR, Onuchic JN. (2022) Uncovering the statistical physics of 3D chromosomal organization using data-driven modeling. Current Opinion in Structural Biology. 75: 102418
Freitas FC, Maldonado M, Oliveira Junior AB, et al. (2022) Biotin-painted proteins have thermodynamic stability switched by kinetic folding routes. The Journal of Chemical Physics. 156: 195101
Markosian C, Staquicini DI, Dogra P, et al. (2022) Genetic and Structural Analysis of SARS-CoV-2 Spike Protein for Universal Epitope Selection. Molecular Biology and Evolution
Vilchez Mercedes SA, Bocci F, Ahmed M, et al. (2022) Nrf2 Modulates the Hybrid Epithelial/Mesenchymal Phenotype and Notch Signaling During Collective Cancer Migration. Frontiers in Molecular Biosciences. 9: 807324
Sanches MN, Knapp K, Oliveira AB, et al. (2022) Examining the Ensembles of Amyloid-β Monomer Variants and Their Propensities to Form Fibers Using an Energy Landscape Visualization Method. The Journal of Physical Chemistry. B. 126: 93-99
Lin X, George JT, Schafer NP, et al. (2021) Rapid Assessment of T-Cell Receptor Specificity of the Immune Repertoire. Nature Computational Science. 1: 362-373
Tripathi S, Brahmachari S, Onuchic JN, et al. (2021) DNA supercoiling-mediated collective behavior of co-transcribing RNA polymerases. Nucleic Acids Research
Markosian C, Staquicini DI, Dogra P, et al. (2021) Apropos of Universal Epitope Discovery for COVID-19 Vaccines: A Framework for Targeted Phage Display-Based Delivery and Integration of New Evaluation Tools. Biorxiv : the Preprint Server For Biology

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