José Nelson Onuchic

1990-2011 Physics University of California, San Diego, La Jolla, CA 
 2011- Physics Rice University, Houston, TX 
Theoretical Biological Physics
"José Nelson Onuchic"
DOI: 10.1073/pnas.1007425107
Onuchic, Jose Nelson New aspects of the theory of electron transfer reaction dynamics. Dissertation (Ph.D.), California Institute of Technology (1987).

Mean distance: 11.56
Cross-listing: Physics Tree


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John J. Hopfield grad student 1987 Caltech (Neurotree)
 (New aspects of the theory of electron transfer reaction dynamics)


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Peter Leopold grad student UCSD
Zhipeng Wang grad student (Computational Biology Tree)
Kareem M Mehrabiani grad student 2015- Rice University (Physics Tree)
Vitor Barbanti Pereira Leite grad student 1989-1995 UCSD (Physics Tree)
Marcos R Betancourt grad student 1992-1995 Rice University (Physics Tree)
Hugh Nymeyer grad student 2001 UCSD (Physics Tree)
Tongye Shen grad student 2002 UCSD (Physics Tree)
Margaret Shun Cheung grad student 2003 UCSD (Physics Tree)
Leslie Lou Chavez grad student 2005 UCSD (Physics Tree)
Sichun Yang grad student 2006 UCSD
Paul Charles Whitford grad student 2009 UCSD (Physics Tree)
Jeffrey Kenneth Noel grad student 2012 UCSD (Physics Tree)
Xingcheng Lin grad student 2012-2018 Rice University (Physics Tree)
Steven S. Plotkin post-doc Rice University
Joan-Emma Shea post-doc 1997-2000 Scripps Research Institute
Changbong Hyeon post-doc 2006-2007 UCSD
Biman Jana post-doc 2011-2013 Rice University
Ryan R Cheng post-doc 2013-2022 Rice University
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Ng Chau K, George JT, Onuchic JN, et al. (2022) Contact map dependence of a T-cell receptor binding repertoire. Physical Review. E. 106: 014406
Prajapati JD, Onuchic JN, Sanbonmatsu KY. (2022) Exploring the Energy Landscape of Riboswitches Using Collective Variables Based on Tertiary Contacts. Journal of Molecular Biology. 167788
Contessoto VG, Cheng RR, Onuchic JN. (2022) Uncovering the statistical physics of 3D chromosomal organization using data-driven modeling. Current Opinion in Structural Biology. 75: 102418
Freitas FC, Maldonado M, Oliveira Junior AB, et al. (2022) Biotin-painted proteins have thermodynamic stability switched by kinetic folding routes. The Journal of Chemical Physics. 156: 195101
Markosian C, Staquicini DI, Dogra P, et al. (2022) Genetic and Structural Analysis of SARS-CoV-2 Spike Protein for Universal Epitope Selection. Molecular Biology and Evolution
Vilchez Mercedes SA, Bocci F, Ahmed M, et al. (2022) Nrf2 Modulates the Hybrid Epithelial/Mesenchymal Phenotype and Notch Signaling During Collective Cancer Migration. Frontiers in Molecular Biosciences. 9: 807324
Sanches MN, Knapp K, Oliveira AB, et al. (2022) Examining the Ensembles of Amyloid-β Monomer Variants and Their Propensities to Form Fibers Using an Energy Landscape Visualization Method. The Journal of Physical Chemistry. B. 126: 93-99
Lin X, George JT, Schafer NP, et al. (2021) Rapid Assessment of T-Cell Receptor Specificity of the Immune Repertoire. Nature Computational Science. 1: 362-373
Tripathi S, Brahmachari S, Onuchic JN, et al. (2021) DNA supercoiling-mediated collective behavior of co-transcribing RNA polymerases. Nucleic Acids Research
Markosian C, Staquicini DI, Dogra P, et al. (2021) Apropos of Universal Epitope Discovery for COVID-19 Vaccines: A Framework for Targeted Phage Display-Based Delivery and Integration of New Evaluation Tools. Biorxiv : the Preprint Server For Biology
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