Jared Sampson
Affiliations: | Columbia University, New York, NY |
Area:
Biochemistry, Structural Biology, Computational ChemistryGoogle:
"Jared Sampson"Mean distance: (not calculated yet)
Parents
Sign in to add mentor| Focco van den Akker | research assistant | 2005-2008 | Case Western Medical School |
| Xiang-Peng Kong | research assistant | 2008-2015 | New York University, school of medicine |
| Richard A. Friesner | grad student | 2015-2020 | Columbia |
| Barry H. Honig | grad student | 2015-2020 | Columbia |
| Lawrence S. Shapiro | grad student | 2015-2020 | Columbia (Neurotree) |
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Publications
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| Nagarajan A, Amberg-Johnson K, Paull E, et al. (2025) Predicting Resistance to Small Molecule Kinase Inhibitors. Journal of Chemical Information and Modeling |
| Liao J, Sergeeva AP, Harder ED, et al. (2024) A Method for Treating Significant Conformational Changes in Alchemical Free Energy Simulations of Protein-Ligand Binding. Journal of Chemical Theory and Computation. 20: 8609-8623 |
| Sampson JM, Cannon DA, Duan J, et al. (2024) Robust prediction of relative binding energies for protein-protein complex mutations using free energy perturbation calculations. Journal of Molecular Biology. 168640 |
| Sampson JM, Cannon DA, Duan J, et al. (2024) Robust prediction of relative binding energies for protein-protein complex mutations using free energy perturbation calculations. Biorxiv : the Preprint Server For Biology |
| Sergeeva AP, Katsamba PS, Liao J, et al. (2023) Free Energy Perturbation Calculations of Mutation Effects on SARS-CoV-2 RBD::ACE2 Binding Affinity. Journal of Molecular Biology. 435: 168187 |
| Zhou T, Tsybovsky Y, Gorman J, et al. (2020) Cryo-EM Structures of SARS-CoV-2 Spike without and with ACE2 Reveal a pH-Dependent Switch to Mediate Endosomal Positioning of Receptor-Binding Domains. Cell Host & Microbe |
| Zhou T, Tsybovsky Y, Olia AS, et al. (2020) A pH-dependent switch mediates conformational masking of SARS-CoV-2 spike. Biorxiv : the Preprint Server For Biology |
| Piccinelli AC, Morato PN, Dos Santos Barbosa M, et al. (2016) Limonene reduces hyperalgesia induced by gp120 and cytokines by modulation of IL-1 β and protein expression in spinal cord of mice. Life Sciences |
| Jiang X, Totrov M, Li W, et al. (2016) Rationally Designed Immunogens Targeting HIV-1 gp120 V1V2 Induce Distinct Conformation-Specific Antibody Responses in Rabbits. Journal of Virology |
| Killikelly A, Benson MA, Ohneck EA, et al. (2015) Structure-based functional characterization of repressor of toxin (Rot), a central regulator of Staphylococcus aureus virulence. Journal of Bacteriology. 197: 188-200 |