Patricia L. Clark
Affiliations: | Chemistry and Biochemistry | University of Notre Dame, Notre Dame, IN, United States |
Area:
protein foldingWebsite:
http://chemistry.nd.edu/faculty/detail/pclark1/Google:
"Patricia L. Clark"Bio:
http://www3.nd.edu/~clarklab/
http://chemistry.nd.edu/news/patricia-l-clark-selected-as-a-member-of-the-editorial-board-of-the-biophysical-journal/
http://physics.library.nd.edu/resources/genealogy/chemistry/documents/ClarkPL.pdf
Mean distance: 8.27 | S | N | B | C | P |
Parents
Sign in to add mentor| Lila M. Gierasch | grad student | 1997 | University of Texas Southwestern Medical Center at Dallas | |
| (Dissection of the folding pathways of a beta-clamshell protein : cellular retinoic acid binding protein I) | ||||
| Jonathan A. King | post-doc | 2001 | MIT | |
Children
Sign in to add trainee| Mirco Junker | grad student | 2008 | Notre Dame |
| Thomas F. Clarke | grad student | 2009 | Notre Dame |
| Jonathan P. Renn | grad student | 2010 | Notre Dame |
| Krastyu G. Ugrinov | grad student | 2010 | Notre Dame |
| Richard N. Besingi | grad student | 2013 | Notre Dame |
BETA: Related publications
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Publications
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| Newaz K, Piland J, Clark PL, et al. (2022) Multi-layer sequential network analysis improves protein 3D structural classification. Proteins |
| Wright G, Rodriguez A, Li J, et al. (2021) CHARMING: Harmonizing synonymous codon usage to replicate a desired codon usage pattern. Protein Science : a Publication of the Protein Society |
| Bowman MA, Riback JA, Rodriguez A, et al. (2020) Properties of protein unfolded states suggest broad selection for expanded conformational ensembles. Proceedings of the National Academy of Sciences of the United States of America |
| Faisal FE, Newaz K, Chaney JL, et al. (2020) Author Correction: GRAFENE: Graphlet-based alignment-free network approach integrates 3D structural and sequence (residue order) data to improve protein structural comparison. Scientific Reports. 10: 13455 |
| Newaz K, Wright G, Piland J, et al. (2020) Network analysis of synonymous codon usage. Bioinformatics (Oxford, England) |
| Clark PL, Plaxco KW, Sosnick TR. (2020) Water as a good solvent for unfolded proteins: Folding and collapse are fundamentally different. Journal of Molecular Biology |
| Walsh IM, Bowman MA, Soto Santarriaga IF, et al. (2020) Synonymous codon substitutions perturb cotranslational protein folding in vivo and impair cell fitness. Proceedings of the National Academy of Sciences of the United States of America |
| Clark PL. (2019) Proteins in the Cell. Protein Science : a Publication of the Protein Society |
| Riback JA, Bowman MA, Zmyslowski AM, et al. (2019) Commonly used FRET fluorophores promote collapse of an otherwise disordered protein. Proceedings of the National Academy of Sciences of the United States of America |
| Sosnick TR, Riback JA, Bowman MA, et al. (2019) The importance of measuring the solvent quality of unfolded proteins Acta Crystallographica Section a Foundations and Advances. 75: a419-a419 |