Jerome P. Nilmeier, Ph.D.
Affiliations: | 2008 | Biophysics | University of California, San Francisco, San Francisco, CA |
Area:
General BiophysicsGoogle:
"Jerome Nilmeier"Mean distance: (not calculated yet)
Parents
Sign in to add mentor| Matthew P. Jacobson | grad student | 2008 | UCSF | |
| (Monte Carlo methods for sampling protein configurations.) | ||||
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Publications
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| Carpenter TS, Kirshner DA, Lau EY, et al. (2014) A method to predict blood-brain barrier permeability of drug-like compounds using molecular dynamics simulations. Biophysical Journal. 107: 630-41 |
| Nilmeier JP, Marian J. (2014) A rigorous sequential update strategy for parallel kinetic Monte Carlo simulation Computer Physics Communications. 185: 2479-2486 |
| Kirshner DA, Nilmeier JP, Lightstone FC. (2013) Catalytic site identification--a web server to identify catalytic site structural matches throughout PDB Nucleic Acids Research. 41 |
| Nilmeier JP, Kirshner DA, Wong SE, et al. (2013) Rapid Catalytic Template Searching as an Enzyme Function Prediction Procedure Plos One. 8 |
| Nilmeier JP, Crooks GE, Minh DD, et al. (2011) Nonequilibrium candidate Monte Carlo is an efficient tool for equilibrium simulation. Proceedings of the National Academy of Sciences of the United States of America. 108: E1009-18 |
| Nilmeier J, Hua L, Coutsias EA, et al. (2011) Assessing protein loop flexibility by hierarchical Monte Carlo sampling. Journal of Chemical Theory and Computation. 7: 1564-1574 |
| Sellers BD, Nilmeier JP, Jacobson MP. (2010) Antibodies as a model system for comparative model refinement. Proteins. 78: 2490-505 |
| Nilmeier J, Jacobson MP. (2009) Monte Carlo Sampling with Hierarchical Move Sets: POSH Monte Carlo. Journal of Chemical Theory and Computation. 5: 1968-84 |
| Nilmeier J, Jacobson M. (2008) Multiscale Monte Carlo Sampling of Protein Sidechains: Application to Binding Pocket Flexibility. Journal of Chemical Theory and Computation. 4: 835-846 |