Burak Erman
Affiliations: | Koc University, Turkey |
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Children
Sign in to add trainee| Ivet Bahar | grad student | (MathTree) | |
| Nergis Gunindi | grad student | Koc University | |
| Mert Gur | grad student | ||
| Turkan Haliloglu | grad student | Bogazici University | |
| Taner Z. Sen | grad student | Bogazici University | |
| Sezen Vatansever | grad student | Koc University | |
| Melik C. Demirel | grad student | 1996-1998 | Bogazici University |
| evrim besray unal | grad student | 2007-2011 | Koc University (Computational Biology Tree) |
| Deniz Aydin | grad student | 2012-2014 | Koc University, Istanbul |
| Aysima Hacisuleyman | grad student | 2015-2019 | Koc University (Neurotree) |
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Publications
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| Hacisuleyman A, Yuret D, Erman B. (2025) Dynamic Coupling and Entropy Changes in KRAS G12D Mutation: Insights into Molecular Flexibility, Allostery and Function. Journal of Molecular Biology. 169075 |
| Hacisuleyman A, Gul A, Erman B. (2024) Role of Mutual Information Profile Shifts in Assessing the Pathogenicity of Mutations on Protein Functions: The Case of Pyrin Variants Associated With Familial Mediterranean Fever. Proteins |
| Demirtaş K, Erman B, Haliloğlu T. (2024) Dynamic correlations: Exact and approximate methods for mutual information. Bioinformatics (Oxford, England) |
| Hacisuleyman A, Erman B. (2023) Synergy and anti-cooperativity in allostery: Molecular dynamics study of WT and oncogenic KRAS-RGL1. Proteins |
| Hacisuleyman A, Erman B. (2023) Fine tuning rigid body docking results using the Dreiding force field: A computational study of 36 known nanobody-protein complexes. Proteins |
| Haliloglu T, Hacisuleyman A, Erman B. (2022) Prediction of Allosteric Communication Pathways in Proteins. Bioinformatics (Oxford, England) |
| Altintel B, Acar B, Erman B, et al. (2022) Subsets of Slow Dynamic Modes Reveal Global Information Sources as Allosteric Sites. Journal of Molecular Biology. 167644 |
| Hacisuleyman A, Erman B. (2022) Information flow and allosteric communication in proteins. The Journal of Chemical Physics. 156: 185101 |
| Golcuk M, Hacisuleyman A, Erman B, et al. (2021) Binding Mechanism of Neutralizing Nanobodies Targeting SARS-CoV-2 Spike Glycoprotein. Journal of Chemical Information and Modeling. 61: 5152-5160 |
| Hacisuleyman A, Erkip A, Erman B, et al. (2021) Synchronous and Asynchronous Response in Dynamically Perturbed Proteins. The Journal of Physical Chemistry. B. 125: 729-739 |