Robert L. Jernigan

Affiliations: 
Iowa State University, Ames, IA, United States 
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Myron Peto grad student 2007 Iowa State
Yaping Feng grad student 2008 Iowa State
Haitao Cheng grad student 2009 Iowa State
Feihong Wu grad student 2009 Iowa State
Sumudu P. Leelananda grad student 2011 Iowa State
Michael T. Zimmermann grad student 2011 Iowa State
Ataur R. Katebi grad student 2013 Iowa State
Usha K. Muppirala grad student 2013 Iowa State
Sayane Shome grad student 2016-2021 Iowa State
Taner Z. Sen post-doc Iowa State
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Publications

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Shome S, Jia K, Sivasankar S, et al. (2023) Characterizing Interactions in E-cadherin Assemblages. Biophysical Journal
Kumar A, Kaynak BT, Dorman KS, et al. (2023) Predicting Allosteric Pockets in Protein Biological Assemblages. Bioinformatics (Oxford, England)
Jia K, Kilinc M, Jernigan RL. (2023) Functional Protein Dynamics Directly from Sequences. The Journal of Physical Chemistry. B. 127: 1914-1921
Kilinc M, Jia K, Jernigan RL. (2023) Improved global protein homolog detection with major gains in function identification. Proceedings of the National Academy of Sciences of the United States of America. 120: e2211823120
Khade PM, Jernigan RL. (2022) Entropies Derived from the Packing Geometries within a Single Protein Structure. Acs Omega. 7: 20719-20730
Jernigan RL, Khade P, Kumar A, et al. (2022) Using Surface Hydrophobicity Together with Empirical Potentials to Identify Protein-Protein Binding Sites: Application to the Interactions of E-cadherins. Methods in Molecular Biology (Clifton, N.J.). 2340: 41-50
Shome S, Sankar K, Jernigan RL. (2021) Simulated Drug Efflux for the AbgT Family of Membrane Transporters. Journal of Chemical Information and Modeling. 61: 5673-5681
Khade PM, Scaramozzino D, Kumar A, et al. (2021) hdANM: a new comprehensive dynamics model for protein hinges. Biophysical Journal
Ehrlich JJ, Weerts RM, Shome S, et al. (2021) Xyloglucan Xylosyltransferase 1 Displays Promiscuity Toward Donor Substrates During In vitro Reactions. Plant & Cell Physiology
Jia K, Jernigan RL, Carver RJ. (2021) New Amino Acid Substitution Matrix Brings Sequence Alignments into Agreement with Structure Matches. Proteins
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