Deanne Marie Taylor, Ph.D.

Affiliations: 
2000-2001 Bioinformatics Group Pfizer Global R&D 
 2001-2006 Bioinformatics Group Serono Laboratories 
 2003-2014 Bioinformatics Graduate Program, Rabb Graduate School of Professional Studies Brandeis University, Waltham, MA, United States 
 2006-2008 Department of Biostatistics Harvard School of Public Health, Boston, MA, United States 
 2008-2014 Department of Obstetrics, Gynecology and Reproductive Science Rutgers University and RMA of NJ 
 2014- Department of Biomedical and Health Informatics Children’s Hospital of Philadelphia, Philadelphia, PA, United States 
 2015- Department of Pediatrics University of Pennsylvania Perelman School of Medicine 
Area:
Bioinformatics, Computational Biology, Biophysics, Physical chemistry
Website:
https://scholar.google.com/citations?user=42OPmz0AAAAJ&hl=en
Google:
"Deanne Taylor CHOP UPenn"
Bio:

Deanne is the Director of Bioinformatics at the Children's Hospital of Philadelphia, and a Research Assistant Professor of Pediatrics at the University of Pennsylvania. Her general areas of study are bioinformatics, biophysics, physical chemistry and computational biology. More specifically, she studies single-cell biology and biological energetics, in systems ranging from microorganisms to eukaryotic tissues including the human germ cell line.

Mean distance: (not calculated yet)
 
Cross-listing: Computational Biology Tree - Physics Tree

Parents

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William Richard Dunham grad student 1995-2001 University of Michigan
 ((Rotation mentor and collaborating graduate committee member.))
Ayyalusamy Ramamoorthy grad student 1996-2001 University of Pennsylvania Medical School
 (Dissertation mentor. Nuclear Magnetic Resonance Coherence Transfer in a Homonuclear two spin-1/2 solid-state system)
John Rogers post-doc 2000-2001 Pfizer Global R&D

Children

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Michelle Zajko grad student 2016-2017 Children’s Hospital of Philadelphia / University of Pennsylvania
Yuanchao Zhang grad student 2014-2020 Rutgers University / The Children's Hospital of Philadelphia
Joseph Dybas post-doc 2015- Children’s Hospital of Philadelphia / University of Pennsylvania
Man S. Kim post-doc 2018- Children’s Hospital of Philadelphia / University of Pennsylvania (Computational Biology Tree)
Dorothy Hammond post-doc 2015-2019 Children’s Hospital of Philadelphia / University of Pennsylvania
Ammar Naqvi post-doc 2015-2019 Children’s Hospital of Philadelphia / University of Pennsylvania
Zalman Vaksman post-doc 2015-2019 Children’s Hospital of Philadelphia / University of Pennsylvania
Noor Dawany research scientist Children’s Hospital of Philadelphia / University of Pennsylvania
Batsal Devkota research scientist Children’s Hospital of Philadelphia / University of Pennsylvania
Katharina Hayer research scientist Children’s Hospital of Philadelphia / University of Pennsylvania (Computational Biology Tree)
Hongbo Xie research scientist Children’s Hospital of Philadelphia / University of Pennsylvania (Computational Biology Tree)
Zhe Jim Zhang research scientist Children’s Hospital of Philadelphia / University of Pennsylvania (Computational Biology Tree)
J. Perry Evans research scientist 2014- Children’s Hospital of Philadelphia / University of Pennsylvania (Computational Biology Tree)
Hossein Fazelinia research scientist 2016- Children’s Hospital of Philadelphia / University of Pennsylvania (Microtree)
Komal Rathi research scientist 2016- Children’s Hospital of Philadelphia / University of Pennsylvania
Steven J. Pastor research scientist 2018- Children’s Hospital of Philadelphia / University of Pennsylvania (Computational Biology Tree)
Erin Reichenberger research scientist 2018- Children’s Hospital of Philadelphia / University of Pennsylvania (Computational Biology Tree)
PIchai Raman research scientist 2015-2019 Children’s Hospital of Philadelphia / University of Pennsylvania

Collaborators

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Bryce E. Nickels collaborator 2014- (Microtree)
BETA: Related publications

Publications

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Winkelman JT, Pukhrambam C, Vvedenskaya IO, et al. (2020) XACT-Seq Comprehensively Defines the Promoter-Position and Promoter-Sequence Determinants for Initial-Transcription Pausing. Molecular Cell
Pastor S, Tran O, Jin A, et al. (2020) Optical mapping of the 22q11.2DS region reveals complex repeat structures and preferred locations for non-allelic homologous recombination (NAHR). Scientific Reports. 10: 12235
Sewda A, Agopian AJ, Goldmuntz E, et al. (2020) Gene-based analyses of the maternal genome implicate maternal effect genes as risk factors for conotruncal heart defects. Plos One. 15: e0234357
Zhang Y, Kim MS, Reichenberger ER, et al. (2020) Scedar: A scalable Python package for single-cell RNA-seq exploratory data analysis. Plos Computational Biology. 16: e1007794
McDonald JT, Stainforth R, Miller J, et al. (2020) NASA GeneLab Platform Utilized for Biological Response to Space Radiation in Animal Models. Cancers. 12
Mandl KD, Glauser T, Krantz ID, et al. (2019) Correction: The Genomics Research and Innovation Network: creating an interoperable, federated, genomics learning system. Genetics in Medicine : Official Journal of the American College of Medical Genetics
Harrington CT, Sotillo E, Robert A, et al. (2019) Correction: Transient stabilization, rather than inhibition, of MYC amplifies extrinsic apoptosis and therapeutic responses in refractory B-cell lymphoma. Leukemia
Asnani M, Hayer KE, Naqvi AS, et al. (2019) Retention of CD19 intron 2 contributes to CART-19 resistance in leukemias with subclonal frameshift mutations in CD19. Leukemia
Mandl KD, Glauser T, Krantz ID, et al. (2019) The Genomics Research and Innovation Network: creating an interoperable, federated, genomics learning system. Genetics in Medicine : Official Journal of the American College of Medical Genetics
Sewda A, Agopian AJ, Goldmuntz E, et al. (2019) Gene-based genome-wide association studies and meta-analyses of conotruncal heart defects. Plos One. 14: e0219926
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