LBPA ENS Cachan 
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Dudas B, Merzel F, Jang H, et al. (2020) Nucleotide-Specific Autoinhibition of Full-Length K-Ras4B Identified by Extensive Conformational Sampling. Frontiers in Molecular Biosciences. 7: 145
Krieger JM, Doruker P, Scott AL, et al. (2020) Towards gaining sight of multiscale events: utilizing network models and normal modes in hybrid methods. Current Opinion in Structural Biology. 64: 34-41
Resende-Lara PT, Perahia D, Scott AL, et al. (2020) Unveiling functional motions based on point mutations in biased signaling systems: A normal mode study on nerve growth factor bound to TrkA. Plos One. 15: e0231542
Pantaleão SQ, Philot EA, de Resende-Lara PT, et al. (2018) Structural Dynamics of DPP-4 and Its Influence on the Projection of Bioactive Ligands. Molecules (Basel, Switzerland). 23
Balog E, Perahia D, Smith JC, et al. (2011) Vibrational softening of a protein on ligand binding. The Journal of Physical Chemistry. B. 115: 6811-7
Palmai Z, Perahia D, Lionne C, et al. (2011) Ligand chirality effects on the dynamics of human 3-phosphoglycerate kinase: comparison between D- and L-nucleotides. Archives of Biochemistry and Biophysics. 511: 88-100
Levy RM, Perahia D, Karplus M. (2010) Molecular dynamics of an alpha-helical polypeptide: Temperature dependence and deviation from harmonic behavior. Proceedings of the National Academy of Sciences of the United States of America. 79: 1346-50
Palmai Z, Chaloin L, Lionne C, et al. (2009) Substrate binding modifies the hinge bending characteristics of human 3-phosphoglycerate kinase: a molecular dynamics study. Proteins. 77: 319-29
Balog E, Smith JC, Perahia D. (2006) Conformational heterogeneity and low-frequency vibrational modes of proteins. Physical Chemistry Chemical Physics : Pccp. 8: 5543-8
Thomas A, Hinsen K, Field MJ, et al. (1999) Tertiary and quaternary conformational changes in aspartate transcarbamylase: a normal mode study. Proteins. 34: 96-112
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