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Tracy M. Handel grad student 2006 UC Berkeley
 (Structural characterization, computational analysis and redesign of SHV-1 beta-lactamase: Beta -lactamase inhibitor protein complexes.)
Jack F. Kirsch grad student 2006 UC Berkeley
 (Structural characterization, computational analysis and redesign of SHV-1 beta-lactamase: Beta -lactamase inhibitor protein complexes.)
Rama Ranganathan post-doc UT Southwestern (FlyTree)
BETA: Related publications

Publications

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Rosensweig C, Reynolds KA, Gao P, et al. (2018) An evolutionary hotspot defines functional differences between CRYPTOCHROMES. Nature Communications. 9: 1138
Rivoire O, Reynolds KA, Ranganathan R. (2016) Evolution-Based Functional Decomposition of Proteins. Plos Computational Biology. 12: e1004817
Reynolds KA. (2015) A new test of computational protein design: predicting posttranslational modification specificity for the enzyme SMYD2. Structure (London, England : 1993). 23: 11-2
Reynolds KA. (2014) Finding a common path: predicting gene function using inferred evolutionary trees. Developmental Cell. 30: 4-5
Reynolds KA, Russ WP, Socolich M, et al. (2013) Evolution-based design of proteins. Methods in Enzymology. 523: 213-35
Reynolds KA, McLaughlin RN, Ranganathan R. (2011) Hot spots for allosteric regulation on protein surfaces. Cell. 147: 1564-75
Hanes MS, Reynolds KA, McNamara C, et al. (2011) Specificity and cooperativity at β-lactamase position 104 in TEM-1/BLIP and SHV-1/BLIP interactions. Proteins. 79: 1267-76
Katritch V, Reynolds KA, Cherezov V, et al. (2009) Analysis of full and partial agonists binding to beta2-adrenergic receptor suggests a role of transmembrane helix V in agonist-specific conformational changes. Journal of Molecular Recognition : Jmr. 22: 307-18
Reynolds KA, Katritch V, Abagyan R. (2009) Identifying conformational changes of the beta(2) adrenoceptor that enable accurate prediction of ligand/receptor interactions and screening for GPCR modulators. Journal of Computer-Aided Molecular Design. 23: 273-88
Reynolds KA, Hanes MS, Thomson JM, et al. (2008) Computational redesign of the SHV-1 beta-lactamase/beta-lactamase inhibitor protein interface. Journal of Molecular Biology. 382: 1265-75
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