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Tracy M. Handel grad student 2006 UC Berkeley
 (Structural characterization, computational analysis and redesign of SHV-1 beta-lactamase: Beta -lactamase inhibitor protein complexes.)
Jack F. Kirsch grad student 2006 UC Berkeley
 (Structural characterization, computational analysis and redesign of SHV-1 beta-lactamase: Beta -lactamase inhibitor protein complexes.)
Rama Ranganathan post-doc UT Southwestern (FlyTree)
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Publications

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Thompson S, Zhang Y, Ingle C, et al. (2020) Altered expression of a quality control protease in reshapes the in vivo mutational landscape of a model enzyme. Elife. 9
McCormick JW, Pincus D, Resnekov O, et al. (2019) Strategies for Engineering and Rewiring Kinase Regulation. Trends in Biochemical Sciences
Tamer YT, Gaszek IK, Abdizadeh H, et al. (2019) High-order epistasis in catalytic power of dihydrofolate reductase gives rise to a rugged fitness landscape in the presence of trimethoprim selection. Molecular Biology and Evolution
Pincus D, Pandey JP, Feder ZA, et al. (2018) Engineering allosteric regulation in protein kinases. Science Signaling. 11
Rosensweig C, Reynolds KA, Gao P, et al. (2018) An evolutionary hotspot defines functional differences between CRYPTOCHROMES. Nature Communications. 9: 1138
Narayanan C, Gagné D, Reynolds KA, et al. (2017) Conserved amino acid networks modulate discrete functional properties in an enzyme superfamily. Scientific Reports. 7: 3207
Pincus D, Resnekov O, Reynolds K. (2017) An evolution-based strategy for engineering allosteric regulation. Physical Biology
Rivoire O, Reynolds KA, Ranganathan R. (2016) Evolution-Based Functional Decomposition of Proteins. Plos Computational Biology. 12: e1004817
Reynolds KA. (2015) A new test of computational protein design: predicting posttranslational modification specificity for the enzyme SMYD2. Structure (London, England : 1993). 23: 11-2
Reynolds KA, Russ WP, Socolich M, et al. (2013) Evolution-based design of proteins. Methods in Enzymology. 523: 213-35
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