Stephen D. Levene, Ph.D

Bioengineering University of Texas at Dallas, Richardson, TX, United States 
Biophysical Chemistry of protein-DNA interactions
"Stephen Levene"

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Cross-listing: Cell Biology Tree


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Donald Morris Crothers grad student 1985 Yale
 (Studies of Sequence-Directed Bending and Flexibility in DNA (Structure, Persistence Length, Kinetoplast, Electric Dichroism, Ring Closure Probability))
Nicholas R. Cozzarelli post-doc UC Berkeley
Bruno H. Zimm post-doc UCSD


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Hua Tsen grad student 2000 UT Dallas (Cell Biology Tree)
Kenneth E. Huffman grad student 2001 UT Dallas (Cell Biology Tree)
Sima S. Zein grad student 2004 UT Dallas (Cell Biology Tree)
Stefan M. Giovan grad student 2014 UT Dallas (Cell Biology Tree)
Massa J. Shoura grad student 2014 UT Dallas
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Hanke A, Ziraldo R, Levene SD. (2021) DNA-Topology Simplification by Topoisomerases. Molecules (Basel, Switzerland). 26
Shoura MJ, Giovan SM, Vetcher AA, et al. (2020) Loop-closure kinetics reveal a stable, right-handed DNA intermediate in Cre recombination. Nucleic Acids Research
Ziraldo R, Shoura MJ, Fire AZ, et al. (2019) Deconvolution of nucleic-acid length distributions: a gel electrophoresis analysis tool and applications. Nucleic Acids Research
Ziraldo R, Hanke A, Levene SD. (2019) Kinetic pathways of topology simplification by Type-II topoisomerases in knotted supercoiled DNA. Nucleic Acids Research. 47: 69-84
Shoura MJ, Gabdank I, Hansen L, et al. (2017) Intricate and Cell-type-specific Populations of Endogenous Circular DNA (eccDNA) in Caenorhabditis elegans and Homo sapiens. G3 (Bethesda, Md.)
Chaires JB, Levene SD. (2015) Preface. Biopolymers. 103: 469
Giovan SM, Hanke A, Levene SD. (2015) DNA cyclization and looping in the wormlike limit: Normal modes and the validity of the harmonic approximation. Biopolymers. 103: 528-38
Chaires JB, Levene SD. (2015) Preface. Biopolymers. 103: 417
Giovan SM, Scharein RG, Hanke A, et al. (2014) Free-energy calculations for semi-flexible macromolecules: applications to DNA knotting and looping. The Journal of Chemical Physics. 141: 174902
Shoura MJ, Ranatunga RJ, Harris SA, et al. (2014) Contribution of fluorophore dynamics and solvation to resonant energy transfer in protein-DNA complexes: a molecular-dynamics study. Biophysical Journal. 107: 700-10
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