Sandro Bottaro
Affiliations: | Italian Institute of Technology, Genoa, United States |
Area:
Molecular Dynamics; Biophysics; Computational chemistryGoogle:
"Sandro Bottaro"Mean distance: (not calculated yet)
Parents
Sign in to add mentor| Kresten Lindorff-Larsen | post-doc | Copenhagen University | |
| Michele Parrinello | post-doc | IIT | |
| Giovanni Bussi | post-doc | 2012-2016 |
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Publications
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| Oxenfarth A, Kümmerer F, Bottaro S, et al. (2023) Integrated NMR/Molecular Dynamics Determination of the Ensemble Conformation of a Thermodynamically Stable CUUG RNA Tetraloop. Journal of the American Chemical Society |
| Cagiada M, Bottaro S, Lindemose S, et al. (2023) Discovering functionally important sites in proteins. Nature Communications. 14: 4175 |
| Bergonzo C, Grishaev AV, Bottaro S. (2022) Conformational Heterogeneity of UCAAUC RNA Oligonucleotide from Molecular Dynamics Simulations, SAXS, and NMR experiments. Rna (New York, N.Y.) |
| Bottaro S, Bussi G, Lindorff-Larsen K. (2021) Conformational Ensembles of Noncoding Elements in the SARS-CoV-2 Genome from Molecular Dynamics Simulations. Journal of the American Chemical Society. 143: 8333-8343 |
| Bengtsen T, Holm VL, Kjølbye LR, et al. (2020) Structure and dynamics of a nanodisc by integrating NMR, SAXS and SANS experiments with molecular dynamics simulations. Elife. 9 |
| Bottaro S, Nichols PJ, Vögeli B, et al. (2020) Integrating NMR and simulations reveals motions in the UUCG tetraloop. Nucleic Acids Research |
| Larsen AH, Wang Y, Bottaro S, et al. (2020) Combining molecular dynamics simulations with small-angle X-ray and neutron scattering data to study multi-domain proteins in solution. Plos Computational Biology. 16: e1007870 |
| Orioli S, Larsen AH, Bottaro S, et al. (2020) How to learn from inconsistencies: Integrating molecular simulations with experimental data. Progress in Molecular Biology and Translational Science. 170: 123-176 |
| Bottaro S, Bengtsen T, Lindorff-Larsen K. (2020) Integrating Molecular Simulation and Experimental Data: A Bayesian/Maximum Entropy Reweighting Approach. Methods in Molecular Biology (Clifton, N.J.). 2112: 219-240 |
| Bengtsen T, Holm VL, Kjølbye LR, et al. (2020) Author response: Structure and dynamics of a nanodisc by integrating NMR, SAXS and SANS experiments with molecular dynamics simulations Elife |