Sandro Bottaro

Affiliations: 
Italian Institute of Technology, Genoa, United States 
Area:
Molecular Dynamics; Biophysics; Computational chemistry
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"Sandro Bottaro"
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Publications

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Bottaro S, Bussi G, Lindorff-Larsen K. (2021) Conformational Ensembles of Noncoding Elements in the SARS-CoV-2 Genome from Molecular Dynamics Simulations. Journal of the American Chemical Society. 143: 8333-8343
Bengtsen T, Holm VL, Kjølbye LR, et al. (2020) Structure and dynamics of a nanodisc by integrating NMR, SAXS and SANS experiments with molecular dynamics simulations. Elife. 9
Bottaro S, Nichols PJ, Vögeli B, et al. (2020) Integrating NMR and simulations reveals motions in the UUCG tetraloop. Nucleic Acids Research
Larsen AH, Wang Y, Bottaro S, et al. (2020) Combining molecular dynamics simulations with small-angle X-ray and neutron scattering data to study multi-domain proteins in solution. Plos Computational Biology. 16: e1007870
Orioli S, Larsen AH, Bottaro S, et al. (2020) How to learn from inconsistencies: Integrating molecular simulations with experimental data. Progress in Molecular Biology and Translational Science. 170: 123-176
Bottaro S, Bengtsen T, Lindorff-Larsen K. (2020) Integrating Molecular Simulation and Experimental Data: A Bayesian/Maximum Entropy Reweighting Approach. Methods in Molecular Biology (Clifton, N.J.). 2112: 219-240
Bengtsen T, Holm VL, Kjølbye LR, et al. (2020) Author response: Structure and dynamics of a nanodisc by integrating NMR, SAXS and SANS experiments with molecular dynamics simulations Elife
Bonomi M, Bussi G, Camilloni C, et al. (2019) Promoting transparency and reproducibility in enhanced molecular simulations Nature Methods. 16: 670-673
Cesari A, Bottaro S, Lindorff-Larsen K, et al. (2019) Fitting corrections to an RNA force field using experimental data. Journal of Chemical Theory and Computation
Bottaro S, Bussi G, Pinamonti G, et al. (2018) Barnaba: Software for Analysis of Nucleic Acids Structures and Trajectories. Rna (New York, N.Y.)
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