Ryan R Cheng, Ph.D.
Affiliations: | 2013-2022 | Center for Theoretical Biological Physics | Rice University, Houston, TX |
| 2022- | Chemistry | University of Kentucky, Lexington, KY |
Area:
BiophysicsGoogle:
"Ryan R Cheng"Mean distance: (not calculated yet)
Parents
Sign in to add mentor| Dmitrii E. Makarov | grad student | 2007-2012 | UT Austin |
| José Nelson Onuchic | post-doc | 2013-2022 | Rice University |
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Publications
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| Shibata M, Lin X, Onuchic JN, et al. (2024) Residue coevolution and mutational landscape for OmpR and NarL response regulator subfamilies. Biophysical Journal |
| Ruben BS, Brahmachari S, Contessoto VG, et al. (2023) Structural Reorganization and Relaxation Dynamics of Axially Stressed Chromosomes. Biophysical Journal |
| Contessoto VG, Cheng RR, Onuchic JN. (2022) Uncovering the statistical physics of 3D chromosomal organization using data-driven modeling. Current Opinion in Structural Biology. 75: 102418 |
| Mehrabiani KM, Cheng RR, Onuchic JN. (2021) Expanding Direct Coupling Analysis to Identify Heterodimeric Interfaces from Limited Protein Sequence Data. The Journal of Physical Chemistry. B |
| Cheng RR, Contessoto V, Lieberman-Aiden E, et al. (2020) Exploring chromosomal structural heterogeneity across multiple cell lines. Elife. 9 |
| Contessoto VG, Cheng RR, Hajitaheri A, et al. (2020) The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome. Nucleic Acids Research |
| Mandic A, Hayes RL, Lammert H, et al. (2019) Structure-Based Model of RNA Pseudoknot Captures Magnesium-dependent Folding Thermodynamics. The Journal of Physical Chemistry. B |
| Krepel D, Cheng RR, Di Pierro M, et al. (2018) Deciphering the structure of the condensin protein complex. Proceedings of the National Academy of Sciences of the United States of America |
| Vian L, Pękowska A, Rao SSP, et al. (2018) The Energetics and Physiological Impact of Cohesin Extrusion. Cell. 175: 292-294 |
| Cheng RR, Haglund E, Tiee NS, et al. (2018) Designing bacterial signaling interactions with coevolutionary landscapes. Plos One. 13: e0201734 |