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| Du B, Yang L, Lloyd CJ, et al. (2019) Genome-scale model of metabolism and gene expression provides a multi-scale description of acid stress responses in Escherichia coli. Plos Computational Biology. 15: e1007525 |
| Du B, Olson CA, Sastry AV, et al. (2019) Adaptive laboratory evolution of under acid stress. Microbiology (Reading, England) |
| Luo H, Hansen ASL, Yang L, et al. (2019) Coupling S-adenosylmethionine-dependent methylation to growth: Design and uses. Plos Biology. 17: e2007050 |
| Du B, Zielinski DC, Palsson BO. (2018) Estimating Metabolic Equilibrium Constants: Progress and Future Challenges. Trends in Biochemical Sciences. 43: 960-969 |
| Du B, Zielinski DC, Monk JM, et al. (2018) Thermodynamic favorability and pathway yield as evolutionary tradeoffs in biosynthetic pathway choice. Proceedings of the National Academy of Sciences of the United States of America |
| Fang X, Monk JM, Mih N, et al. (2018) Escherichia coli B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa. Bmc Systems Biology. 12: 66 |
| Du B, Zhang Z, Grubner S, et al. (2018) Temperature-Dependent Estimation of Gibbs Energies Using an Updated Group-Contribution Method. Biophysical Journal. 114: 2691-2702 |
| Du B, Zielinski DC, Palsson BO. (2017) Topological and kinetic determinants of the modal matrices of dynamic models of metabolism. Plos One. 12: e0189880 |
| Du B, Zielinski DC, Kavvas ES, et al. (2016) Evaluation of rate law approximations in bottom-up kinetic models of metabolism. Bmc Systems Biology. 10: 40 |
| Yang L, Tan J, O'Brien EJ, et al. (2015) Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data. Proceedings of the National Academy of Sciences of the United States of America |