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David F. Green, Ph.D.

Affiliations: 
2005- Applied Math & Statistics Stony Brook University, Stony Brook, NY, United States 
Area:
Molecular biophysics, glycobiology, protein design
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"David Green"
Bio:

David Green obtained his Bachelor's degree in Chemistry (Honours) from Simon Fraser University in 1997; during his time at Simon Fraser (1993-1997) he worked under the supervision of B. Mario Pinto. From 1997-2002, he was a doctoral student in the Department of Chemistry at M.I.T.; his dissertation advisor was Bruce Tidor. After receiving his Ph.D. in 2002, he remained at M.I.T. as a post-doctoral associate in the Department of Biological Engineering and the Artificial Intelligence Lab (now part of CSAIL) for 3 years. In 2005, he began as an Assistant Professor in Stony Brook University's Applied Mathematics & Statistics Department. He was promoted to Associate Professor in 2012, and remains in this position to date.

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Parents

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Bruce Tidor grad student 1997-2002

Children

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Aniel Nieves-Gonzalez grad student 2010 SUNY Stony Brook
Noel Carrascal grad student 2011 SUNY Stony Brook
Yukiji Karen Fujimoto grad student 2012 SUNY Stony Brook
Vadim Patsalo grad student 2012 SUNY Stony Brook
Yulin Huang grad student 2013 SUNY Stony Brook
Tao Jiang grad student 2014 SUNY Stony Brook
Loretta Au grad student 2008-2014 SUNY Stony Brook (Computational Biology Tree)

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Publications

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Au L, Green DF. (2016) Direct Calculation of Protein Fitness Landscapes through Computational Protein Design. Biophysical Journal. 110: 75-84
Xiao S, Patsalo V, Shan B, et al. (2013) Rational modification of protein stability by targeting surface sites leads to complicated results. Proceedings of the National Academy of Sciences of the United States of America. 110: 11337-42
Fujimoto YK, Green DF. (2012) Carbohydrate recognition by the antiviral lectin cyanovirin-N. Journal of the American Chemical Society. 134: 19639-51
Marek PJ, Patsalo V, Green DF, et al. (2012) Ionic strength effects on amyloid formation by amylin are a complicated interplay among Debye screening, ion selectivity, and Hofmeister effects. Biochemistry. 51: 8478-90
Patsalo V, Yondola MA, Luan B, et al. (2012) Biophysical and functional analyses suggest that adenovirus E4-ORF3 protein requires higher-order multimerization to function against promyelocytic leukemia protein nuclear bodies. The Journal of Biological Chemistry. 287: 22573-83
Patsalo V, Raleigh DP, Green DF. (2011) Rational and computational design of stabilized variants of cyanovirin-N that retain affinity and specificity for glycan ligands. Biochemistry. 50: 10698-712
Green DF. (2010) A Statistical Framework for Hierarchical Methods in Molecular Simulation and Design. Journal of Chemical Theory and Computation. 6: 1682-97
Carrascal N, Green DF. (2010) Energetic decomposition with the generalized-born and Poisson-Boltzmann solvent models: lessons from association of G-protein components. The Journal of Physical Chemistry. B. 114: 5096-116
Taskent-Sezgin H, Chung J, Patsalo V, et al. (2009) Interpretation of p-cyanophenylalanine fluorescence in proteins in terms of solvent exposure and contribution of side-chain quenchers: a combined fluorescence, IR and molecular dynamics study. Biochemistry. 48: 9040-6
Green DF. (2009) Molecular recognition in protein/carbohydrate systems: From biophysics to anti-viral therapies Biophysical Journal. 96: 599a
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