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George E. Palade grad student 1961 Rockefeller
 (Amino acid incorporation in vitro by ribonucleoprotein particles detached from guinea pig liver microsomes.)
William P. Jencks post-doc 1961-1963 Brandeis
Ephraim Katchalski-Katzir post-doc 1963-1964 Weizmann Institute


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Michael D. Toney grad student 1990 UC Berkeley
Ichiro Matsumura grad student 1991-1995 UC Berkeley
Andrew C. Eliot grad student 2003 UC Berkeley
Kathryn E. Muratore grad student 2006 UC Berkeley
Kimberly Ann Reynolds grad student 2006 UC Berkeley
Edgar Deu Sandoval grad student 2007 UC Berkeley
Daniel S. Malashock grad student 2007 UC Berkeley
Michael J. McLeish post-doc 1983-1984 UC Berkeley
BETA: Related publications


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Srouji JR, Xu A, Park A, et al. (2016) The Evolution of Function within the Nudix homology Clan. Proteins
Nguyen VN, Park A, Xu A, et al. (2016) Substrate specificity characterization for eight putative Nudix hydrolases. Evaluation of criteria for substrate identification within the Nudix family. Proteins
Muratore KE, Engelhardt BE, Srouji JR, et al. (2013) Molecular function prediction for a family exhibiting evolutionary tendencies toward substrate specificity swapping: recurrence of tyrosine aminotransferase activity in the Iα subfamily. Proteins. 81: 1593-609
Xu A, Desai AM, Brenner SE, et al. (2013) A continuous fluorescence assay for the characterization of Nudix hydrolases. Analytical Biochemistry. 437: 178-84
Deu E, Kirsch JF. (2011) Engineering homooligomeric proteins to detect weak intersite allosteric communication: aminotransferases, a case study. Protein Science : a Publication of the Protein Society. 20: 1991-2003
Hanes MS, Reynolds KA, McNamara C, et al. (2011) Specificity and cooperativity at β-lactamase position 104 in TEM-1/BLIP and SHV-1/BLIP interactions. Proteins. 79: 1267-76
Shultzaberger RK, Malashock DS, Kirsch JF, et al. (2010) The fitness landscapes of cis-acting binding sites in different promoter and environmental contexts. Plos Genetics. 6: e1001042
Sankararaman S, Sha F, Kirsch JF, et al. (2010) Active site prediction using evolutionary and structural information. Bioinformatics (Oxford, England). 26: 617-24
Deu E, Dhoot J, Kirsch JF. (2009) The partially folded homodimeric intermediate of Escherichia coli aspartate aminotransferase contains a "molten interface" structure. Biochemistry. 48: 433-41
Reynolds KA, Hanes MS, Thomson JM, et al. (2008) Computational redesign of the SHV-1 beta-lactamase/beta-lactamase inhibitor protein interface. Journal of Molecular Biology. 382: 1265-75
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