Year |
Citation |
Score |
2010 |
BEVERIDGE DL, MCCONNELL KJ, NIRMALA R, YOUNG MA. ChemInform Abstract: Molecular Dynamics Simulation of DNA and Protein-DNA Complexes Including Solvent. Recent Progress. Cheminform. 26: no-no. DOI: 10.1002/chin.199509325 |
0.621 |
|
2003 |
Arthanari H, McConnell KJ, Beger R, Young MA, Beveridge DL, Bolton PH. Assessment of the molecular dynamics structure of DNA in solution based on calculated and observed NMR NOESY volumes and dihedral angles from scalar coupling constants. Biopolymers. 68: 3-15. PMID 12579576 DOI: 10.1002/Bip.10263 |
0.593 |
|
2002 |
Jayaram B, McConnell K, Dixit SB, Das A, Beveridge DL. Free-energy component analysis of 40 protein-DNA complexes: a consensus view on the thermodynamics of binding at the molecular level. Journal of Computational Chemistry. 23: 1-14. PMID 11913374 DOI: 10.1002/Jcc.10009 |
0.715 |
|
2002 |
Kombo DC, Jayaram B, Mcconnell KJ, Beveridge DL. Calculation of the affinity of the λ repressor-operator complex based on free energy component analysis Molecular Simulation. 28: 187-211. DOI: 10.1080/08927020211970 |
0.666 |
|
2001 |
McConnell KJ, Beveridge DL. Molecular dynamics simulations of B '-DNA: sequence effects on A-tract-induced bending and flexibility. Journal of Molecular Biology. 314: 23-40. PMID 11724529 DOI: 10.1006/Jmbi.2001.4926 |
0.631 |
|
2001 |
Kombo DC, McConnell KJ, Young MA, Beveridge DL. Molecular dynamics simulation reveals sequence-intrinsic and protein-induced geometrical features of the OL1 DNA operator. Biopolymers. 59: 205-25. PMID 11473347 DOI: 10.1002/1097-0282(20011005)59:4<205::Aid-Bip1019>3.0.Co;2-4 |
0.714 |
|
2001 |
Blakaj DM, McConnell KJ, Beveridge DL, Baranger AM. Molecular dynamics and thermodynamics of protein-RNA interactions: mutation of a conserved aromatic residue modifies stacking interactions and structural adaptation in the U1A-stem loop 2 RNA complex. Journal of the American Chemical Society. 123: 2548-51. PMID 11456923 DOI: 10.1021/Ja005538J |
0.572 |
|
2000 |
McConnell KJ, Beveridge DL. DNA structure: what's in charge? Journal of Molecular Biology. 304: 803-20. PMID 11124028 DOI: 10.1006/Jmbi.2000.4167 |
0.63 |
|
2000 |
Beveridge DL, McConnell KJ. Nucleic acids: theory and computer simulation, Y2K. Current Opinion in Structural Biology. 10: 182-96. PMID 10753816 DOI: 10.1016/S0959-440X(00)00076-2 |
0.606 |
|
1999 |
Manoj N, Srinivas VR, Surolia A, Vijayan M, Suguna K, Ravishankar R, Schwarzenbacher R, Zeth K, Diederichs, Kostner GM, Gries A, Laggner P, Prassl R, Madhusudan, Akamine P, ... ... McConnell K, et al. Contributory presentations/posters Journal of Biosciences. 24: 33-198. DOI: 10.1007/Bf02989373 |
0.462 |
|
1999 |
Jayaram B, McConnell KJ, Dixit SB, Beveridge DL. Free Energy Analysis of Protein-DNA Binding: The EcoRI Endonuclease-DNA Complex Journal of Computational Physics. 151: 333-357. DOI: 10.1006/Jcph.1998.6173 |
0.725 |
|
1995 |
Beveridge DL, McConnell KJ, Young MA, Vijayakumar S, Ravishanker G. Molecular dynamics simulations of DNA and a protein-DNA complex including solvent Molecular Engineering. 5: 255-269. DOI: 10.1007/Bf00999594 |
0.677 |
|
1994 |
McConnell KJ, Nirmala R, Young MA, Ravishanker G, Beveridge DL. A nanosecond molecular dynamics trajectory for a B DNA double helix: Evidence for substates Journal of the American Chemical Society. 116: 4461-4462. DOI: 10.1021/Ja00089A039 |
0.631 |
|
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