Kelly Marie Thayer - Publications

Affiliations: 
2004 Wesleyan University, Middletown, CT, United States 

14 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Lakhani B, Thayer KM, Black E, Beveridge DL. Spectral analysis of molecular dynamics simulations on PDZ: MD sectors. Journal of Biomolecular Structure & Dynamics. 1-10. PMID 31262238 DOI: 10.1080/07391102.2019.1588169  0.96
2018 Mishra A, Siwach P, Misra P, Jayaram B, Bansal M, Olson WK, Thayer KM, Beveridge DL. Toward a Universal Structural and Energetic Model for Prokaryotic Promoters. Biophysical Journal. PMID 30172386 DOI: 10.1016/j.bpj.2018.08.002  0.96
2017 Thayer KM, Lakhani B, Beveridge DL. A Molecular Dynamics-Markov State Model of Protein Ligand Binding and Allostery in CRIB-PDZ: Conformational Selection and Induced Fit. The Journal of Physical Chemistry. B. PMID 28489401 DOI: 10.1021/acs.jpcb.7b02083  0.96
2017 Lakhani B, Thayer KM, Hingorani MM, Beveridge DL. Evolutionary Covariance Combined with Molecular Dynamics Predicts a Framework for Allostery in the MutS DNA Mismatch Repair Protein. The Journal of Physical Chemistry. B. PMID 28135092 DOI: 10.1021/acs.jpcb.6b11976  0.96
2016 Thayer KM. Structure prediction and analysis of neuraminidase sequence variants. Biochemistry and Molecular Biology Education : a Bimonthly Publication of the International Union of Biochemistry and Molecular Biology. PMID 26900942 DOI: 10.1002/bmb.20963  0.96
2013 Aragam NR, Thayer KM, Nge N, Hoffman I, Martinson F, Kamwendo D, Lin FC, Sutherland C, Bailey JA, Juliano JJ. Diversity of T cell epitopes in Plasmodium falciparum circumsporozoite protein likely due to protein-protein interactions. Plos One. 8: e62427. PMID 23667476 DOI: 10.1371/journal.pone.0062427  0.96
2013 Roscoe BP, Thayer KM, Zeldovich KB, Fushman D, Bolon DNA. Analyses of the effects of all ubiquitin point mutants on yeast growth rate Journal of Molecular Biology. 425: 1363-1377. PMID 23376099 DOI: 10.1016/j.jmb.2013.01.032  0.96
2010 Ali A, Bandaranayake RM, Cai Y, King NM, Kolli M, Mittal S, Murzycki JF, Nalam MN, Nalivaika EA, Ozen A, Prabu-Jeyabalan MM, Thayer K, Schiffer CA. Molecular Basis for Drug Resistance in HIV-1 Protease. Viruses. 2: 2509-35. PMID 21994628 DOI: 10.3390/v2112509  0.96
2010 Leonard E, Ajikumar PK, Thayer K, Xiao WH, Mo JD, Tidor B, Stephanopoulos G, Prather KLJ. Combining metabolic and protein engineering of a terpenoid biosynthetic pathway for overproduction and selectivity control Proceedings of the National Academy of Sciences of the United States of America. 107: 13654-13659. PMID 20643967 DOI: 10.1073/pnas.1006138107  0.96
2005 Dixit SB, Beveridge DL, Case DA, Cheatham TE, Giudice E, Lankas F, Lavery R, Maddocks JH, Osman R, Sklenar H, Thayer KM, Varnai P. Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. II: sequence context effects on the dynamical structures of the 10 unique dinucleotide steps. Biophysical Journal. 89: 3721-40. PMID 16169978 DOI: 10.1529/biophysj.105.067397  0.96
2004 Ponomarev SY, Thayer KM, Beveridge DL. Ion motions in molecular dynamics simulations on DNA. Proceedings of the National Academy of Sciences of the United States of America. 101: 14771-5. PMID 15465909 DOI: 10.1073/pnas.0406435101  0.96
2004 Beveridge DL, Barreiro G, Byun KS, Case DA, Cheatham TE, Dixit SB, Giudice E, Lankas F, Lavery R, Maddocks JH, Osman R, Seibert E, Sklenar H, Stoll G, Thayer KM, et al. Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. I. Research design and results on d(CpG) steps. Biophysical Journal. 87: 3799-813. PMID 15326025 DOI: 10.1529/biophysj.104.045252  0.96
2004 Beveridge DL, Dixit SB, Barreiro G, Thayer KM. Molecular dynamics simulations of DNA curvature and flexibility: helix phasing and premelting. Biopolymers. 73: 380-403. PMID 14755574 DOI: 10.1002/bip.20019  0.96
2002 Thayer KM, Beveridge DL. Hidden Markov models from molecular dynamics simulations on DNA. Proceedings of the National Academy of Sciences of the United States of America. 99: 8642-7. PMID 12072566 DOI: 10.1073/pnas.132148699  0.96
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