Pengyu Ren - Publications

2015- Biomedical Engineering University of Texas at Austin, Austin, Texas, U.S.A. 

239 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Hu J, Chen Z, Zhang Y, Wei X, Zhao H, Ren P, Han P, Cheng Y, Shi W, Zhang Q. [Outcome of otolith organ function after treatment of sudden sensorineural hearing loss]. Lin Chuang Er Bi Yan Hou Tou Jing Wai Ke Za Zhi = Journal of Clinical Otorhinolaryngology, Head, and Neck Surgery. 34: 993-998. PMID 33254317 DOI: 10.13201/j.issn.2096-7993.2020.11.008  0.44
2020 Ren P, Li B, Dong S, Lyu B, Gong S, Zhang Q, Qu J, Han P. The head fixation based on skull cap: An improved protocol used in single unit recording in the vestibular system. Methodsx. 7: 101109. PMID 33145185 DOI: 10.1016/j.mex.2020.101109  0.4
2020 Ren P, Gao Z, Han P, Chen Z, Qu J, Gong S, Deng Y, Chen F, Zhang Y, Zhang Q. [Optimal design of neural modulation strategy of vestibular prosthesis]. Lin Chuang Er Bi Yan Hou Tou Jing Wai Ke Za Zhi = Journal of Clinical Otorhinolaryngology, Head, and Neck Surgery. 34: 389-398. PMID 32791605 DOI: 10.13201/j.issn.2096-7993.2020.05.002  0.44
2020 Ren P, Li B, Dong S, Lyu B, Qu J, Gong S, Zhang Q, Han P. The real identity and sensory overlap mechanism of special vestibular afferent neurons that sense both rotation and linear force. Life Sciences. 118144. PMID 32755624 DOI: 10.1016/j.lfs.2020.118144  0.4
2020 El Khoury L, Célerse F, Lagardère L, Jolly LH, Derat E, Hobaika Z, Maroun RG, Ren P, Bouaziz S, Gresh N, Piquemal JP. Reconciling NMR Structures of the HIV-1 Nucleocapsid Protein (NCp7) using Extensive Polarizable Force Field Free-Energy Simulations. Journal of Chemical Theory and Computation. PMID 32178519 DOI: 10.1021/acs.jctc.9b01204  0.64
2020 Pan C, Liu C, Peng J, Ren P, Huang X. Three-site and five-site fixed-charge water models compatible with AMOEBA force field. Journal of Computational Chemistry. PMID 31976572 DOI: 10.1002/jcc.26151  1
2019 Liu C, Piquemal JP, Ren P. Implementation of Geometry Dependent Charge Flux into Polarizable AMOEBA+ Potential. The Journal of Physical Chemistry Letters. PMID 31865706 DOI: 10.1021/acs.jpclett.9b03489  1
2019 Ren P, Niu X, Liu C, Liu J, Li H, Zhao Q, Xing J, Bai Y, Liang Y, Han P. Associations between expression levels of nine core nucleotide excision repair genes in lymphocytes and risk of head and neck squamous cell carcinomas in a Chinese population. International Journal of Clinical Oncology. PMID 31832883 DOI: 10.1007/s10147-019-01586-9  1
2019 Jing Z, Qi R, Thibonnier M, Ren P. Molecular Dynamics Study of the Hybridization between RNA and Modified Oligonucleotides. Journal of Chemical Theory and Computation. PMID 31553600 DOI: 10.1021/acs.jctc.9b00519  0.96
2019 Chen YI, Chang YJ, Nguyen TD, Liu C, Phillion S, Kuo YA, Vu HT, Liu A, Liu YL, Hong S, Ren P, Yankeelov TE, Yeh HC. Measuring DNA hybridization kinetics in live cells using a time-resolved 3D single-molecule tracking method. Journal of the American Chemical Society. PMID 31509386 DOI: 10.1021/jacs.9b08036  1
2019 Qi R, Walker B, Jing Z, Yu M, Stancu G, Edupuganti R, Dalby KN, Ren P. Computational and Experimental Studies of Inhibitor Design for Aldolase A. The Journal of Physical Chemistry. B. PMID 31268712 DOI: 10.1021/acs.jpcb.9b04551  0.96
2019 Liu C, Piquemal JP, Ren P. AMOEBA+ Classical Potential for Modeling Molecular Interactions. Journal of Chemical Theory and Computation. PMID 31136175 DOI: 10.1021/acs.jctc.9b00261  1
2019 Jing Z, Liu C, Cheng SY, Qi R, Walker BD, Piquemal JP, Ren P. Polarizable Force Fields for Biomolecular Simulations: Recent Advances and Applications. Annual Review of Biophysics. PMID 30916997 DOI: 10.1146/annurev-biophys-070317-033349  1
2019 Lee EY, Zhang C, Di Domizio J, Jin F, Connell W, Hung M, Malkoff N, Veksler V, Gilliet M, Ren P, Wong GCL. Helical antimicrobial peptides assemble into protofibril scaffolds that present ordered dsDNA to TLR9. Nature Communications. 10: 1012. PMID 30833557 DOI: 10.1038/s41467-019-08868-w  0.68
2018 Meng F, Jing Z, Ferreira R, Ren P, Zhang F. Investigating the Association Mechanism between Rafoxanide and Povidone. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 30360618 DOI: 10.1021/acs.langmuir.8b03174  0.96
2018 Rackers JA, Liu C, Ren P, Ponder JW. A physically grounded damped dispersion model with particle mesh Ewald summation. The Journal of Chemical Physics. 149: 084115. PMID 30193468 DOI: 10.1063/1.5030434  1
2018 Rackers JA, Wang Z, Lu C, Laury ML, Lagardère L, Schnieders MJ, Piquemal JP, Ren P, Ponder JW. Tinker 8: Software Tools for Molecular Design. Journal of Chemical Theory and Computation. 14: 5273-5289. PMID 30176213 DOI: 10.1021/acs.jctc.8b00529  1
2018 Jing Z, Liu C, Qi R, Ren P. Many-body effect determines the selectivity for Ca and Mg in proteins. Proceedings of the National Academy of Sciences of the United States of America. PMID 30038003 DOI: 10.1073/pnas.1805049115  1
2018 Qi R, Jing Z, Liu C, Piquemal JP, Dalby KN, Ren P. Elucidating the Phosphate Binding Mode of PBP: The Critical Effect of Buffer Solution. The Journal of Physical Chemistry. B. PMID 29807433 DOI: 10.1021/acs.jpcb.8b03194  1
2018 Lagardère L, Jolly LH, Lipparini F, Aviat F, Stamm B, Jing ZF, Harger M, Torabifard H, Cisneros GA, Schnieders MJ, Gresh N, Maday Y, Ren PY, Ponder JW, Piquemal JP. Tinker-HP: a massively parallel molecular dynamics package for multiscale simulations of large complex systems with advanced point dipole polarizable force fields. Chemical Science. 9: 956-972. PMID 29732110 DOI: 10.1039/c7sc04531j  1
2018 Zhang C, Lu C, Jing Z, Wu C, Piquemal JP, Ponder JW, Ren P. AMOEBA Polarizable Atomic Multipole Force Field for Nucleic Acids. Journal of Chemical Theory and Computation. PMID 29438622 DOI: 10.1021/acs.jctc.7b01169  1
2018 Zhao J, Wang G, Del Mundo IM, McKinney JA, Lu X, Bacolla A, Boulware SB, Zhang C, Zhang H, Ren P, Freudenreich CH, Vasquez KM. Distinct Mechanisms of Nuclease-Directed DNA-Structure-Induced Genetic Instability in Cancer Genomes. Cell Reports. 22: 1200-1210. PMID 29386108 DOI: 10.1016/j.celrep.2018.01.014  0.68
2017 Wang C, Ren P, Luo R. Ionic Solution: What Goes Right and Wrong with Continuum Solvation Modeling. The Journal of Physical Chemistry. B. PMID 29164898 DOI: 10.1021/acs.jpcb.7b09616  0.52
2017 Jing Z, Qi R, Liu C, Ren P. Study of interactions between metal ions and protein model compounds by energy decomposition analyses and the AMOEBA force field. The Journal of Chemical Physics. 147: 161733. PMID 29096462 DOI: 10.1063/1.4985921  1
2017 Wendel BS, He C, Qu M, Wu D, Hernandez SM, Ma KY, Liu EW, Xiao J, Crompton PD, Pierce SK, Ren P, Chen K, Jiang N. Accurate immune repertoire sequencing reveals malaria infection driven antibody lineage diversification in young children. Nature Communications. 8: 531. PMID 28912592 DOI: 10.1038/s41467-017-00645-x  0.52
2017 Han X, Jing Z, Wu W, Zou B, Peng Z, Ren P, Wikramanayake A, Lu Z, Leblanc RM. Biocompatible and blood-brain barrier permeable carbon dots for inhibition of Aβ fibrillation and toxicity, and BACE1 activity. Nanoscale. PMID 28850143 DOI: 10.1039/c7nr04352j  0.96
2017 Deng S, Wang Q, Ren P. Estimating and modeling charge transfer from the SAPT induction energy. Journal of Computational Chemistry. PMID 28766729 DOI: 10.1002/jcc.24864  0.64
2017 Harger M, Li D, Wang Z, Dalby K, Lagardère L, Piquemal JP, Ponder J, Ren P. Tinker-OpenMM: Absolute and relative alchemical free energies using AMOEBA on GPUs. Journal of Computational Chemistry. 38: 2047-2055. PMID 28600826 DOI: 10.1002/jcc.24853  0.64
2017 Liu C, Qi R, Wang Q, Piquemal JP, Ren P. Capturing Many-body Interactions with Classical Dipole Induction Models. Journal of Chemical Theory and Computation. PMID 28482664 DOI: 10.1021/acs.jctc.7b00225  1
2017 Obliosca JM, Cheng SY, Chen YA, Llanos MF, Liu YL, Imphean DM, Bell D, Petty JT, Ren P, Yeh HC. LNA Thymidine Monomer Enables Differentiation of the Four Single-Nucleotide Variants by Melting Temperature. Journal of the American Chemical Society. PMID 28463488 DOI: 10.1021/jacs.7b03395  0.4
2017 Bell DR, Cheng SY, Salazar H, Ren P. Capturing RNA Folding Free Energy with Coarse-Grained Molecular Dynamics Simulations. Scientific Reports. 7: 45812. PMID 28393861 DOI: 10.1038/srep45812  0.44
2017 Edupuganti R, Taliaferro JM, Wang Q, Xie X, Cho EJ, Vidhu F, Ren P, Anslyn EV, Bartholomeusz C, Dalby KN. Discovery of a potent inhibitor of MELK that inhibits expression of the anti-apoptotic protein Mcl-1 and TNBC cell growth. Bioorganic & Medicinal Chemistry. PMID 28351607 DOI: 10.1016/j.bmc.2017.03.018  0.64
2017 Aviat F, Levitt A, Stamm B, Maday Y, Ren P, Ponder JW, Lagardère L, Piquemal JP. Truncated Conjugate Gradient: An Optimal Strategy for the Analytical Evaluation of the Many-Body Polarization Energy and Forces in Molecular Simulations. Journal of Chemical Theory and Computation. 13: 180-190. PMID 28068773 DOI: 10.1021/acs.jctc.6b00981  1
2016 Zhang C, Bell D, Harger M, Ren P. Polarizable Multipole-based Force Field for Aromatic Molecules and Nucleobases. Journal of Chemical Theory and Computation. PMID 28030769 DOI: 10.1021/acs.jctc.6b00918  0.68
2016 Mao G, Ren P, Wang G, Yan F, Zhang Y. MicroRNA-128-3p Protects Mouse Against Cerebral Ischemia Through Reducing p38α Mitogen-Activated Protein Kinase Activity. Journal of Molecular Neuroscience : Mn. PMID 27905005 DOI: 10.1007/s12031-016-0871-z  0.4
2016 Rackers JA, Wang Q, Liu C, Piquemal JP, Ren P, Ponder JW. An optimized charge penetration model for use with the AMOEBA force field. Physical Chemistry Chemical Physics : Pccp. PMID 27901142 DOI: 10.1039/c6cp06017j  1
2016 Qi R, Wang Q, Ren P. General van der Waals potential for common organic molecules. Bioorganic & Medicinal Chemistry. PMID 27519463 DOI: 10.1016/j.bmc.2016.07.062  0.96
2016 Wang C, Nguyen PH, Pham K, Huynh D, Le TN, Wang H, Ren P, Luo R. Calculating protein-ligand binding affinities with MMPBSA: Method and error analysis. Journal of Computational Chemistry. PMID 27510546 DOI: 10.1002/jcc.24467  0.52
2016 Bell DR, Qi R, Jing Z, Xiang JY, Mejias C, Schnieders MJ, Ponder JW, Ren P. Calculating binding free energies of host-guest systems using the AMOEBA polarizable force field. Physical Chemistry Chemical Physics : Pccp. PMID 27254477 DOI: 10.1039/c6cp02509a  1
2016 Wang J, Yao L, Li B, Meng Y, Ma X, Lai Y, Si E, Ren P, Yang K, Shang X, Wang H. Comparative Proteomic Analysis of Cultured Suspension Cells of the Halophyte Halogeton glomeratus by iTRAQ Provides Insights into Response Mechanisms to Salt Stress. Frontiers in Plant Science. 7: 110. PMID 26904073 DOI: 10.3389/fpls.2016.00110  0.68
2016 Liu XT, Ren PW, Peng L, Kang DY, Zhang TL, Wen S, Hong Q, Yang WJ. Effectiveness and safety of ShenXiong glucose injection for acute ischemic stroke: a systematic review and GRADE approach. Bmc Complementary and Alternative Medicine. 16: 68. PMID 26895969 DOI: 10.1186/s12906-016-1038-8  0.36
2016 Tang M, Huang C, Wang YF, Ren PG, Chen L, Xiao TX, Wang BB, Pan YF, Tsang BK, Zabel BA, Ma BH, Zhao HY, Zhang JV. CMKLR1 deficiency maintains ovarian steroid production in mice treated chronically with dihydrotestosterone. Scientific Reports. 6: 21328. PMID 26893072 DOI: 10.1038/srep21328  0.44
2016 Liu X, Tan Y, Zhang C, Zhang Y, Zhang L, Ren P, Deng H, Luo J, Ke Y, Du X. NAT10 regulates p53 activation through acetylating p53 at K120 and ubiquitinating Mdm2. Embo Reports. PMID 26882543 DOI: 10.15252/embr.201540505  0.32
2016 Dong S, Jin M, Li Y, Ren P, Liu J. miR-137 acts as a tumor suppressor in papillary thyroid carcinoma by targeting CXCL12. Oncology Reports. PMID 26847706 DOI: 10.3892/or.2016.4604  0.48
2016 She C, Shi GL, Xu W, Zhou XZ, Li J, Tian Y, Li J, Li WH, Dong QR, Ren PG. Effect of low-dose X-ray irradiation and Ti particles on the osseointegration of prosthetic. Journal of Orthopaedic Research : Official Publication of the Orthopaedic Research Society. PMID 26826053 DOI: 10.1002/jor.23179  0.44
2016 Narth C, Lagardère L, Polack É, Gresh N, Wang Q, Bell DR, Rackers JA, Ponder JW, Ren PY, Piquemal JP. Scalable improvement of SPME multipolar electrostatics in anisotropic polarizable molecular mechanics using a general short-range penetration correction up to quadrupoles. Journal of Computational Chemistry. 37: 494-506. PMID 26814845 DOI: 10.1002/jcc.24257  1
2016 Houser JR, Busch DJ, Bell DR, Li B, Ren P, Stachowiak JC. The impact of physiological crowding on the diffusivity of membrane bound proteins. Soft Matter. PMID 26751985 DOI: 10.1039/c5sm02572a  1
2016 Patricelli MP, Janes MR, Li LS, Hansen R, Peters U, Kessler LV, Chen Y, Kucharski JM, Feng J, Ely T, Chen JH, Firdaus SJ, Babbar A, Ren P, Liu Y. Selective Inhibition of Oncogenic KRAS Output with Small Molecules Targeting the Inactive State. Cancer Discovery. PMID 26739882 DOI: 10.1158/2159-8290.CD-15-1105  0.56
2016 He J, Wu L, Mao H, Liu H, Jing B, Yu Y, Ren P, Feng C, Liu X. Development of a vehicle emission inventory with high temporal-spatial resolution based on NRT traffic data and its impact on air pollution in Beijing - Part 2: Impact of vehicle emission on urban air quality Atmospheric Chemistry and Physics. 16: 3171-3184. DOI: 10.5194/acp-16-3171-2016  0.48
2016 Ren P, Zhang W, Liu JH, Huang W. Dynamic analysis of aluminium alloy honeycomb core sandwich panels subjected to underwater shock loading Zhendong Yu Chongji/Journal of Vibration and Shock. 35: 7-11 and 17. DOI: 10.13465/j.cnki.jvs.2016.02.002  0.64
2016 Ren P, Zhang W, Liu J. Experimental research on shock resistant properties of aluminum alloy lattice core sandwich panels under underwater shock loading Baozha Yu Chongji/Explosion and Shock Waves. 36: 101-106. DOI: 10.11883/1001-1455(2016)01-0101-06  0.64
2016 Xu D, Ren P, Sun L, Song H. Precoder-and-receiver design scheme for multi-user coordinated multi-point in LTE-A and fifth generation systems Iet Communications. 10: 292-299. DOI: 10.1049/iet-com.2015.0229  0.36
2016 Cui X, Ren P, Deng D, Deng J, Bao X. Single layer graphene encapsulating non-precious metals as high-performance electrocatalysts for water oxidation Energy and Environmental Science. 9: 123-129. DOI: 10.1039/c5ee03316k  0.48
2016 Li J, Liu S, Zhang H, Lü E, Ren P, Ren J. Synthesis and characterization of an unusual snowflake-shaped ZSM-5 zeolite with high catalytic performance in the methanol to olefin reaction Chinese Journal of Catalysis. 37: 308-315. DOI: 10.1016/S1872-2067(15)60979-2  0.32
2016 Liu Y, Zhou Y, Zhang J, Zhang S, Ren P. The relation between the structure and electrochemical performance of sodiated iron phosphate in sodium-ion batteries Journal of Power Sources. 314: 1-9. DOI: 10.1016/j.jpowsour.2016.03.003  0.56
2016 Li F, Ren P. A novel solution for heat conduction problems by extending scaled boundary finite element method International Journal of Heat and Mass Transfer. 95: 678-688. DOI: 10.1016/j.ijheatmasstransfer.2015.12.019  0.4
2016 Ren P, Xu Z, Gou X. Pythagorean fuzzy TODIM approach to multi-criteria decision making Applied Soft Computing Journal. 42: 246-259. DOI: 10.1016/j.asoc.2015.12.020  0.32
2016 He Y, Guo H, Jin M, Ren P. A linguistic entropy weight method and its application in linguistic multi-attribute group decision making Nonlinear Dynamics. 1-6. DOI: 10.1007/s11071-015-2595-y  0.68
2016 Gou X, Xu Z, Ren P. The Properties of Continuous Pythagorean Fuzzy Information International Journal of Intelligent Systems. 31: 401-424. DOI: 10.1002/int.21788  0.32
2016 Meng Y, Ren P, Ma X, Li B, Bao Q, Zhang H, Wang J, Bai J, Wang H. GGE biplot-based evaluation of yield performance of barley genotypes across different environments in China Journal of Agricultural Science and Technology. 18: 533-543.  0.32
2016 Yang F, Tian X, Fan X, Zhang W, Ren P. Determination of captopril with potassium permanganate chemiluminescence system Der Pharma Chemica. 8: 289-293.  0.32
2015 Liu LX, Zhang CW, Ren PW, Xiang SW, Xu D, Xie XD, Zhang H. Prognosis research of delayed facial palsy after microvascular decompression for hemifacial spasm. Acta Neurochirurgica. PMID 26659255 DOI: 10.1007/s00701-015-2652-9  0.32
2015 Zheng J, Shen Y, Li C, Guo Y, Ren P. [Study on perceived fatigue evaluating model during simulated load carriage]. Zhonghua Lao Dong Wei Sheng Zhi Ye Bing Za Zhi = Zhonghua Laodong Weisheng Zhiyebing Zazhi = Chinese Journal of Industrial Hygiene and Occupational Diseases. 33: 444-447. PMID 26653380  0.32
2015 Lagardère L, Lipparini F, Polack É, Stamm B, Cancès É, Schnieders M, Ren P, Maday Y, Piquemal JP. Scalable evaluation of polarization energy and associated forces in polarizable molecular dynamics: II. Toward massively parallel computations using smooth particle mesh Ewald. Journal of Chemical Theory and Computation. 11: 2589-99. PMID 26575557 DOI: 10.1021/acs.jctc.5b00171  0.64
2015 Zhang C, Lu C, Wang Q, Ponder JW, Ren P. Polarizable Multipole-Based Force Field for Dimethyl and Trimethyl Phosphate. Journal of Chemical Theory and Computation. 11: 5326-39. PMID 26574325 DOI: 10.1021/acs.jctc.5b00562  1
2015 Lipparini F, Lagardère L, Raynaud C, Stamm B, Cancès E, Mennucci B, Schnieders M, Ren P, Maday Y, Piquemal JP. Polarizable molecular dynamics in a polarizable continuum solvent. Journal of Chemical Theory and Computation. 11: 623-34. PMID 26516318 DOI: 10.1021/ct500998q  0.64
2015 Li X, Liu N, Ren P, Cao Q, Wang P, Zhao L, Lu B, Wang P. [Prognostic value of combined expression of Aurora A, p53 and p21 WAF1 in patients after curative resection of non-small cell lung cancer]. Zhonghua Zhong Liu Za Zhi [Chinese Journal of Oncology]. 37: 512-6. PMID 26463327  0.6
2015 Yu J, Ren P, Zhong T, Wang Y, Yan M, Xue B, Li R, Dai C, Liu C, Chen G, Yu XF. Pseudolaric acid B inhibits proliferation in SW579 human thyroid squamous cell carcinoma. Molecular Medicine Reports. PMID 26460192 DOI: 10.3892/mmr.2015.4418  1
2015 He T, Ren P, Liu X, Xu S, Han X, Bao X. Direct observation of DME carbonylation in the different channels of H-MOR zeolite by continuous-flow solid-state NMR spectroscopy. Chemical Communications (Cambridge, England). PMID 26451500 DOI: 10.1039/c5cc07201h  0.48
2015 Qu ZW, Liu TT, Ren C, Gan X, Qiu CY, Ren P, Rao Z, Hu WP. 17β-Estradiol enhances ASIC activity in primary sensory neurons to produce sex difference in acidosis-induced nociception. Endocrinology. en20151557. PMID 26441237 DOI: 10.1210/en.2015-1557  0.52
2015 Gan L, Xiu R, Ren P, Yue M, Su H, Guo G, Xiao D, Yu J, Jiang H, Liu H, Hu G, Qing G. Metabolic targeting of oncogene MYC by selective activation of the proton-coupled monocarboxylate family of transporters. Oncogene. PMID 26434591 DOI: 10.1038/onc.2015.360  0.56
2015 Wang Q, Rackers JA, He C, Qi R, Narth C, Lagardere L, Gresh N, Ponder JW, Piquemal JP, Ren P. General Model for Treating Short-Range Electrostatic Penetration in a Molecular Mechanics Force Field. Journal of Chemical Theory and Computation. 11: 2609-2618. PMID 26413036 DOI: 10.1021/acs.jctc.5b00267  1
2015 Lv H, Wang Q, Wu S, Yang L, Ren P, Yang Y, Gao J, Li L. Neonatal hypoxic ischemic encephalopathy-related biomarkers in serum and cerebrospinal fluid. Clinica Chimica Acta; International Journal of Clinical Chemistry. PMID 26320853 DOI: 10.1016/j.cca.2015.08.021  0.64
2015 Liang X, Zhou M, Feng JJ, Wu L, Fang SP, Ge XY, Sun HJ, Ren PC, Lv X. Efficacy of dexmedetomidine on postoperative nausea and vomiting: a meta-analysis of randomized controlled trials. International Journal of Clinical and Experimental Medicine. 8: 8450-8471. PMID 26309498  0.36
2015 Xie M, Cheng TO, Fei H, Ren P, He Y, Wang X, Lu Q, Han W, Li K, Li L, Yang Y, Chen O. The diagnostic value of transthoracic echocardiography for eosinophilic myocarditis: A single center experience from China. International Journal of Cardiology. 201: 353-357. PMID 26301679 DOI: 10.1016/j.ijcard.2015.07.104  0.68
2015 Yu J, Zhang W, Zhang R, Jiang G, Tang H, Ruan X, Ren P, Lu B. Molecular Hydrogen Attenuates Hypoxia/reoxygenation Injury of Intrahepatic Cholangiocytes by Activating Nrf2 Expression. Toxicology Letters. PMID 26276082 DOI: 10.1016/j.toxlet.2015.08.010  0.56
2015 Zhang L, Sun Z, Ren P, Lee RJ, Xiang G, Lv Q, Han W, Wang J, Ge S, Xie M. Ultrasound-Targeted Microbubble Destruction (UTMD) Assisted Delivery of shRNA against PHD2 into H9C2 Cells. Plos One. 10: e0134629. PMID 26267649 DOI: 10.1371/journal.pone.0134629  0.68
2015 Ren P, Gong MZ, Wang ZY, Zhang P, Chen P, Ma WL, Zhou CJ. DACH1 Expresison in Osteosarcoma and Its Relationship with Proliferation and Angiogenesis. The Indian Journal of Surgery. 77: 200-5. PMID 26246702 DOI: 10.1007/s12262-012-0761-8  0.32
2015 Zou G, Bello-Orti B, Aragon V, Tucker AW, Luo R, Ren P, Bi D, Zhou R, Jin H. The Cipher Code of Simple Sequence Repeats in "Vampire Pathogens". Scientific Reports. 5: 12441. PMID 26215592 DOI: 10.1038/srep12441  0.4
2015 Lu Q, Wang J, Yu G, Guo T, Hu C, Ren P. Expression and clinical significance of mammalian target of rapamycin/P70 ribosomal protein S6 kinase signaling pathway in human colorectal carcinoma tissue. Oncology Letters. 10: 277-282. PMID 26171014 DOI: 10.3892/ol.2015.3228  0.68
2015 Ren P, Yao S, Li J, Valdes-Sosa PA, Kendrick KM. Improved Prediction of Preterm Delivery Using Empirical Mode Decomposition Analysis of Uterine Electromyography Signals. Plos One. 10: e0132116. PMID 26161639 DOI: 10.1371/journal.pone.0132116  0.68
2015 Qi R, Wang LP, Wang Q, Pande VS, Ren P. United polarizable multipole water model for molecular mechanics simulation. The Journal of Chemical Physics. 143: 014504. PMID 26156485 DOI: 10.1063/1.4923338  1
2015 Zhu Q, Gong L, Liu X, Wang J, Ren P, Zhang W, Yao L, Han X, Zhu S, Lan M, Li Y, Zhang W. Loss of heterozygosity at D8S262: an early genetic event of hepatocarcinogenesis. Diagnostic Pathology. 10: 70. PMID 26076954 DOI: 10.1186/s13000-015-0308-y  0.68
2015 Wang Q, Edupuganti R, Tavares CD, Dalby KN, Ren P. Using docking and alchemical free energy approach to determine the binding mechanism of eEF2K inhibitors and prioritizing the compound synthesis. Frontiers in Molecular Biosciences. 2: 9. PMID 25988177 DOI: 10.3389/fmolb.2015.00009  0.64
2015 Tang LM, Wang XF, Ren PT, Xu GG, Wang CS. The diagnosis of gallbladder agenesis: two cases report. International Journal of Clinical and Experimental Medicine. 8: 3010-6. PMID 25932274  0.56
2015 Wang J, Li B, Meng Y, Ma X, Lai Y, Si E, Yang K, Ren P, Shang X, Wang H. Transcriptomic profiling of the salt-stress response in the halophyte Halogeton glomeratus. Bmc Genomics. 16: 169. PMID 25880042 DOI: 10.1186/s12864-015-1373-z  0.68
2015 Wang R, Dong X, Liu G, Ren P, Pu S. Multi-functional ion-sensor based on a photochromic diarylethene with a 1H-imidazo [4,5-f][1,10] phenanthroline unit. Luminescence : the Journal of Biological and Chemical Luminescence. PMID 25847126 DOI: 10.1002/bio.2895  0.52
2015 Xiao Z, Ren P, Chao Y, Wang Q, Kuai J, Lv M, Chen L, Gao C, Sun X. Protective role of isoflurane pretreatment in rats with focal cerebral ischemia and the underlying molecular mechanism. Molecular Medicine Reports. 12: 675-83. PMID 25738964 DOI: 10.3892/mmr.2015.3408  0.36
2015 Yu J, Zhang W, Zhang R, Ruan X, Ren P, Lu B. Lactulose accelerates liver regeneration in rats by inducing hydrogen. The Journal of Surgical Research. 195: 128-35. PMID 25700936 DOI: 10.1016/j.jss.2015.01.034  0.56
2015 Yu J, Zhang L, Ren P, Zhong T, Li Z, Wang Z, Li J, Liu X, Zhao K, Zhang W, Yu XF. Enterovirus 71 mediates cell cycle arrest in S phase through non-structural protein 3D. Cell Cycle (Georgetown, Tex.). 14: 425-36. PMID 25659038 DOI: 10.4161/15384101.2014.980631  0.48
2015 Liu J, Dong BF, Wang PS, Ren PY, Xue S, Zhang X?, Han Z, Chen G. Silencing NOB1 enhances doxorubicin antitumor activity of the papillary thyroid carcinoma in vitro and in vivo. Oncology Reports. 33: 1551-9. PMID 25592304 DOI: 10.3892/or.2015.3730  0.48
2015 Warthaka M, Adelmann CH, Kaoud TS, Edupuganti R, Yan C, Johnson WH, Ferguson S, Tavares CD, Pence LJ, Anslyn EV, Ren P, Tsai KY, Dalby KN. Quantification of a Pharmacodynamic ERK End Point in Melanoma Cell Lysates: Toward Personalized Precision Medicine. Acs Medicinal Chemistry Letters. 6: 47-52. PMID 25589929 DOI: 10.1021/ml500198b  1
2015 Deng J, Ren P, Deng D, Bao X. Enhanced electron penetration through an ultrathin graphene layer for highly efficient catalysis of the hydrogen evolution reaction. Angewandte Chemie (International Ed. in English). 54: 2100-4. PMID 25565666 DOI: 10.1002/anie.201409524  0.32
2015 Xiao J, Pan X, Guo S, Ren P, Bao X. Toward fundamentals of confined catalysis in carbon nanotubes. Journal of the American Chemical Society. 137: 477-82. PMID 25496137 DOI: 10.1021/ja511498s  0.32
2015 Wang C, Feng MC, Yang WD, Xiao LJ, Li GX, Zhao JJ, Ren P. A new method to decline the SWC effect on the accuracy for monitoring SOM with hyperspectral technology Guang Pu Xue Yu Guang Pu Fen Xi/Spectroscopy and Spectral Analysis. 35: 3495-3499. DOI: 10.3964/j.issn.1000-0593(2015)12-3495-05  0.52
2015 Li Y, Jin M, Ren P, Liao Z. Research on the optimal initial shunt strategy of Jiuzhaigou based on the optimization model Discrete and Continuous Dynamical Systems - Series S. 8: 1239-1249. DOI: 10.3934/dcdss.2015.8.1239  0.68
2015 Yang J, Huang C, Ren P, Wang M. Preparation, thermal cure and ceramization of liquid silazane oligomeric resins Kuei Suan Jen Hsueh Pao/Journal of the Chinese Ceramic Society. 43: 1692-1700. DOI: 10.14062/j.issn.0454-5648.2015.12.03  0.52
2015 Song P, Yang T, Wang C, Pan D, Ren P. Analysis of moisture changes during rice seed soaking process using low-field NMR Nongye Gongcheng Xuebao/Transactions of the Chinese Society of Agricultural Engineering. 31: 279-284. DOI: 10.11975/j.issn.1002-6819.2015.15.038  0.52
2015 Ren PJ, Chen ZM, Ma J, Sui XQ, Wu K. Search result diversification combing semantic and temporal intent Jisuanji Xuebao/Chinese Journal of Computers. 38: 2076-2091. DOI: 10.11897/SP.J.1016.2015.02076  0.44
2015 Ren P, Dai N, Deng HY, Zhang JX. Growth kinetics and microstructures of Cu nanofilms on mo substrate by electrodeposition Journal of the Electrochemical Society. 162: D9-D14. DOI: 10.1149/2.0221501jes  0.36
2015 Du G, Zhou M, Ren P, Shui W, Zhou P, Wu Z. A 3D modeling and measurement system for cultural heritage preservation Proceedings of Spie - the International Society For Optical Engineering. 9524. DOI: 10.1117/12.2189616  0.36
2015 Xu D, Ren P, Du Q, Sun L. Robust precoder-and-receiver design for interference suppression and channel uncertainty restraint in multi-user CoMP system Ieee Vehicular Technology Conference. 2015. DOI: 10.1109/VTCSpring.2015.7146066  0.36
2015 Lv G, Pei Z, Ren P, Li G. Channel dependant dynamic threshold control for energy detection based spectrum sensing Ieee International Symposium On Personal, Indoor and Mobile Radio Communications, Pimrc. 2015: 1763-1767. DOI: 10.1109/PIMRC.2014.7136454  0.72
2015 Li J, Ma Y, Ren P, Zhang C. 10×200 Gb/s real-time transmission over 2000km with commercial devices, flex-grid, flexible modulation format and 5 types of fiber 2015 Opto-Electronics and Communications Conference, Oecc 2015. DOI: 10.1109/OECC.2015.7340062  0.68
2015 Ren P, Di M, Song H, Luo C, Grecos C. Dual Smoothing for Marine Oil Spill Segmentation Ieee Geoscience and Remote Sensing Letters. DOI: 10.1109/LGRS.2015.2497716  0.36
2015 Xu H, Sun L, Ren P, Du Q. Securing two-way cooperative systems with an untrusted relay: A constellation-rotation aided approach Ieee Communications Letters. 19: 2270-2273. DOI: 10.1109/LCOMM.2015.2479231  0.36
2015 Sun L, Ren P, Du Q, Wang Y, Gao Z. Security-Aware Relaying Scheme for Cooperative Networks With Untrusted Relay Nodes Ieee Communications Letters. 19: 463-466. DOI: 10.1109/LCOMM.2014.2385095  0.36
2015 Wang D, Ren P, Wang Y, Du Q, Sun L. Cooperative jamming with untrusted SUs for secure communication of two-hop primary system Iwcmc 2015 - 11th International Wireless Communications and Mobile Computing Conference. 90-95. DOI: 10.1109/IWCMC.2015.7289063  0.36
2015 Wang R, Ren P, Liu C, Guo S, Huang R. Understanding NBTI-induced dynamic variability in the nano-reliability Era: From devices to circuits Proceedings of the International Symposium On the Physical and Failure Analysis of Integrated Circuits, Ipfa. 2015: 119-121. DOI: 10.1109/IPFA.2015.7224347  0.52
2015 Zou J, Wang R, Guo S, Luo M, Yu Z, Jiang X, Ren P, Wang J, Liu J, Wu J, Wong W, Yu S, Wu H, Lee SW, Wang Y, et al. New understanding of state-loss in complex RTN: Statistical experimental study, trap interaction models, and impact on circuits Technical Digest - International Electron Devices Meeting, Iedm. 2015: 34.5.1-34.5.4. DOI: 10.1109/IEDM.2014.7047169  0.52
2015 Ji J, Qiu Y, Guo S, Wang R, Ren P, Hao P, Huang R. New Framework for the random charging/discharging of oxide traps in HfO2 gate dielectric: Ab-initio simulation and experimental evidence Technical Digest - International Electron Devices Meeting, Iedm. 2015: 21.4.1-21.4.4. DOI: 10.1109/IEDM.2014.7047096  0.52
2015 Guo S, Huang R, Hao P, Luo M, Ren P, Wang J, Bu W, Wu J, Wong W, Yu S, Wu H, Lee SW, Wang R, Wang Y. DTMOS mode as an effective solution of RTN suppression for robust device/circuit co-design Technical Digest - International Electron Devices Meeting, Iedm. 2015: 12.6.1-12.6.4. DOI: 10.1109/IEDM.2014.7047040  0.52
2015 Wang J, Ren P, Huang M, Guo L. The design and implementation of voice mailbox system based on VoIP Proceedings of the Ieee International Conference On Software Engineering and Service Sciences, Icsess. 2015: 611-614. DOI: 10.1109/ICSESS.2015.7339132  0.68
2015 Ren X, Yu Q, Chen B, Zheng N, Ren P. A reconfigurable parallel FPGA accelerator for the kernel affine projection algorithm International Conference On Digital Signal Processing, Dsp. 2015: 906-910. DOI: 10.1109/ICDSP.2015.7252008  0.36
2015 Liu W, Ren P, Sun D, Zhao Y, Liu K. Study on attacking and defending techniques in IPv6 networks International Conference On Digital Signal Processing, Dsp. 2015: 48-53. DOI: 10.1109/ICDSP.2015.7251328  0.32
2015 Wang Y, Ren P, Du Q, Sun L. Power allocation for cognitive radio networks with statistical QoS provisioning of primary users Ieee International Conference On Communications. 2015: 7719-7724. DOI: 10.1109/ICC.2015.7249561  0.36
2015 Tang X, Ren P, Wang Y, Du Q, Sun L. User association as a stochastic game for enhanced performance in heterogeneous networks Ieee International Conference On Communications. 2015: 3417-3422. DOI: 10.1109/ICC.2015.7248853  0.36
2015 He H, Du Q, Song H, Li W, Wang Y, Ren P. Traffic-aware ACB scheme for massive access in machine-to-machine networks Ieee International Conference On Communications. 2015: 617-622. DOI: 10.1109/ICC.2015.7248390  0.36
2015 Fan F, Li X, Ren P, Cai X, Yan Y, Fan Y, Niu H. Correlations between X-ray attenuation and GAG content of different cartilage layers based on contrast agent enhanced Micro-CT Proceedings of the Annual International Conference of the Ieee Engineering in Medicine and Biology Society, Embs. 2015: 6366-6369. DOI: 10.1109/EMBC.2015.7319849  0.6
2015 Ren P, Li X, Fan F, Cai X, Gong H, Fan Y, Niu H. Ultrasound observation of GAG content of human hip joint cartilage in different old age groups Proceedings of the Annual International Conference of the Ieee Engineering in Medicine and Biology Society, Embs. 2015: 2697-2700. DOI: 10.1109/EMBC.2015.7318948  0.6
2015 Zhang H, Liu J, Liu Z, Zhang N, Wang L, Lv X, Ren P. A fast handwritten numeral recognition framework based on peak densities 2015 Ieee China Summit and International Conference On Signal and Information Processing, Chinasip 2015 - Proceedings. 549-553. DOI: 10.1109/ChinaSIP.2015.7230463  0.68
2015 Liu X, Lin W, Huang M, Wada R, Wang J, Chen Z, Wang Q, Ren P, Yang Y, Jin S, Ma P, Ma J, Bai Z, Hu Q. Freezeout concept and dynamical transport model in intermediate-energy heavy-ion reactions Physical Review C - Nuclear Physics. 92. DOI: 10.1103/PhysRevC.92.014623  0.68
2015 Ren P, Zhang N, Liu Z, Xue B, Li J, Wang J. Promotion of electron confinement and hole injection in GaN-based green light-emitting diodes with a hybrid electron blocking layer Journal of Physics D: Applied Physics. 48. DOI: 10.1088/0022-3727/48/4/045101  0.68
2015 Ren P, Zheng A, Xiao J, Pan X, Bao X. Exploring the ring current of carbon nanotubes by first-principles calculations Chemical Science. 6: 902-908. DOI: 10.1039/c4sc01996b  0.32
2015 Zou G, Bello-Orti B, Aragon V, Tucker AW, Luo R, Ren P, Bi D, Zhou R, Jin H. The Cipher Code of Simple Sequence Repeats in "vampire Pathogens" Scientific Reports. 5. DOI: 10.1038/srep12441  0.4
2015 Lipparini F, Lagardère L, Raynaud C, Stamm B, Cancès E, Mennucci B, Schnieders M, Ren P, Maday Y, Piquemal JP. Polarizable molecular dynamics in a polarizable continuum solvent Journal of Chemical Theory and Computation. 11: 623-634. DOI: 10.1021/ct500998q  1
2015 Pérez García PM, Ren P, Scopelliti R, Hu X. Nickel-catalyzed direct alkylation of terminal alkynes at room temperature: A hemilabile pincer ligand enhances catalytic activity Acs Catalysis. 5: 1164-1171. DOI: 10.1021/cs501502u  0.32
2015 Zhang F, Ren P, Pan X, Liu J, Li M, Bao X. Self-assembly of atomically thin and unusual face-centered cubic re nanowires within carbon nanotubes Chemistry of Materials. 27: 1569-1573. DOI: 10.1021/cm504012h  0.32
2015 Wang Q, Rackers JA, He C, Qi R, Narth C, Lagardere L, Gresh N, Ponder JW, Piquemal JP, Ren P. General Model for Treating Short-Range Electrostatic Penetration in a Molecular Mechanics Force Field Journal of Chemical Theory and Computation. 11: 2609-2618. DOI: 10.1021/acs.jctc.5b00267  1
2015 Lagardère L, Lipparini F, Polack É, Stamm B, Cancès É, Schnieders M, Ren P, Maday Y, Piquemal JP. Scalable Evaluation of Polarization Energy and Associated Forces in Polarizable Molecular Dynamics: II. Toward Massively Parallel Computations Using Smooth Particle Mesh Ewald Journal of Chemical Theory and Computation. 11: 2589-2599. DOI: 10.1021/acs.jctc.5b00171  1
2015 Gao Y, Hu Y, Ren P, Zhou D, Qiu J. Effect of glass network modifier R2O (R=Li, Na and K) on upconversion luminescence in Er3+/Yb3+ co-doped NaYF4 oxyfluoride glass-ceramics Journal of Rare Earths. 33: 830-836. DOI: 10.1016/S1002-0721(14)60492-0  0.32
2015 Han R, Wada R, Chen Z, Nie Y, Liu X, Zhang S, Ren P, Jia B, Tian G, Luo F, Lin W, Liu J, Shi F, Huang M, Ruan X, et al. Fast neutron scattering on Gallium target at 14.8 MeV Nuclear Physics A. 936: 17-28. DOI: 10.1016/j.nuclphysa.2015.01.004  0.64
2015 Liu X, Lin W, Wada R, Huang M, Ren P, Chen Z, Wang J, Xiao GQ, Zhang S, Han R, Liu J, Shi F, Rodrigues MRD, Kowalski S, Keutgen T, et al. Reconstructed primary fragments and symmetry energy, temperature and density of the fragmenting source in Zn64+Sn112 at 40MeV/nucleon Nuclear Physics A. 933: 290-305. DOI: 10.1016/j.nuclphysa.2014.09.077  0.68
2015 Ren P, Zhang D, Dong C, Li X. Preparation and evaluation of intelligent corrosion inhibitor based on photo-crosslinked pH-sensitive hydrogels Materials Letters. 160: 480-483. DOI: 10.1016/j.matlet.2015.08.005  0.6
2015 Yan D, Li Y, Liu Y, Zhuo R, Geng B, Wu Z, Wang J, Ren P, Yan P. Design and influence of mass ratio on supercapacitive properties of ternary electrode material reduced graphene oxide@MnO2@ poly(3,4-ethylenedioxythiophene)-poly(styrene sulfonate) Electrochimica Acta. 169: 317-325. DOI: 10.1016/j.electacta.2015.04.078  0.68
2015 Ren P, Zhu S, Wang F. Spontaneous reaction formation of Cr23C6 diffusion barrier layer between nanocrystalline MCrAlY coating and Ni-base superalloy at high temperature Corrosion Science. DOI: 10.1016/j.corsci.2015.07.008  0.32
2015 Zhang X, Wu Y, Ren P, Liu X, Kang D. The relationship between external and internal validity of randomized controlled trials: A sample of hypertension trials from China Contemporary Clinical Trials Communications. 1: 32-38. DOI: 10.1016/j.conctc.2015.10.004  0.36
2015 Ren F, Zhu G, Ren P, Wang K, Cui X, Yan X. Cyanate ester resin filled with graphene nanosheets and CoFe2O4-reduced graphene oxide nanohybrids as a microwave absorber Applied Surface Science. 351: 40-47. DOI: 10.1016/j.apsusc.2015.05.101  0.36
2015 Xu Z, Wang Y, Ren P, Ni Y, Liao X. Quality of Banana Puree During Storage: a Comparison of High Pressure Processing and Thermal Pasteurization Methods Food and Bioprocess Technology. DOI: 10.1007/s11947-015-1635-4  0.36
2015 Huang W, Zhang W, Ren P, Guo ZT, Ye N, Li DC, Gao YB. An Experimental Investigation of Water-Filled Tank Subjected to Horizontal High Speed Impact Experimental Mechanics. 55: 1123-1138. DOI: 10.1007/s11340-015-0012-6  0.36
2015 Zhang Z, Bai L, Ren P, Hancock ER. High-order graph matching kernel for early carcinoma EUS image classification Multimedia Tools and Applications. 1-20. DOI: 10.1007/s11042-015-3108-1  0.44
2015 Hussain M, du Q, Sun L, Ren P. Security enhancement for video transmission via noise aggregation in immersive systems Multimedia Tools and Applications. DOI: 10.1007/s11042-015-2936-3  0.36
2015 Ren P, Chen Z, Ma J, Wang S, Zhang Z, Ren Z. Mining and ranking users’ intents behind queries Information Retrieval. 18: 504-529. DOI: 10.1007/s10791-015-9271-1  0.44
2015 Liu Y, Zhou Y, Zhang S, Zhang J, Ren P, Qian C. Amorphous iron phosphate/carbonized polyaniline nanorods composite as cathode material in sodium-ion batteries Journal of Solid State Electrochemistry. DOI: 10.1007/s10008-015-3063-9  0.56
2015 du Q, Song H, Xu Q, Ren P, Sun L. Interference-controlled D2D routing aided by knowledge extraction at cellular infrastructure towards ubiquitous CPS Personal and Ubiquitous Computing. DOI: 10.1007/s00779-015-0872-x  0.36
2015 Torabifard H, Starovoytov ON, Ren P, Cisneros GA. Development of an AMOEBA water model using GEM distributed multipoles Theoretical Chemistry Accounts. 134. DOI: 10.1007/s00214-015-1702-y  1
2015 Bai L, Zhang Z, Ren P, Hancock ER. A high-order depth-based graph matching method Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9256: 465-476. DOI: 10.1007/978-3-319-23192-1_39  0.36
2015 Yan DX, Pang H, Li B, Vajtai R, Xu L, Ren PG, Wang JH, Li ZM. Structured reduced graphene oxide/polymer composites for ultra-efficient electromagnetic interference shielding Advanced Functional Materials. 25: 559-566. DOI: 10.1002/adfm.201403809  0.32
2015 Lei S, Ren P, Xu L, Wang H, Cui H. Dodecyl amine functionalized graphene oxide/isotatic polypropylene nanocomposites with high gas barrier properties Gaofenzi Cailiao Kexue Yu Gongcheng/Polymeric Materials Science and Engineering. 31: 138-141.  0.32
2015 Liang X, Zhou M, Feng JJ, Wu L, Fang SP, Ge XY, Sun HJ, Ren PC, Lv X. Efficacy of dexmedetomidine on postoperative nausea and vomiting: A meta-analysis of randomized controlled trials International Journal of Clinical and Experimental Medicine. 8: 12113-12134.  0.36
2014 Lagardère L, Lipparini F, Polack É, Stamm B, Cancès É, Schnieders M, Ren P, Maday Y, Piquemal JP. Scalable Evaluation of Polarization Energy and Associated Forces in Polarizable Molecular Dynamics: II.Towards Massively Parallel Computations using Smooth Particle Mesh Ewald. Journal of Chemical Theory and Computation. 10: 1638-1651. PMID 26512230 DOI: 10.1021/ct401096t  0.64
2014 Ren P, Zou G, Bailly B, Xu S, Zeng M, Chen X, Shen L, Zhang Y, Guillon P, Arenzana-Seisdedos F, Buchy P, Li J, von Itzstein M, Li Q, Altmeyer R. The approved pediatric drug suramin identified as a clinical candidate for the treatment of EV71 infection-suramin inhibits EV71 infection in vitro and in vivo. Emerging Microbes & Infections. 3: e62. PMID 26038755 DOI: 10.1038/emi.2014.60  0.68
2014 Cai K, Zhao H, Wu H, Feng S, Ren P, Cai R, Xiong G. Unidirectionally progressive resection of left upper pulmonary lobe under video-assisted thoracoscopy. Journal of Thoracic Disease. 6: 1843-7. PMID 25589987 DOI: 10.3978/j.issn.2072-1439.2014.12.26  0.4
2014 Ren P, Feng MC, Yang WD, Wang C, Liu TT, Wang HQ. [Response of winter wheat (Triticum aestivum L. ) hyperspectral characteristics to low temperature stress]. Guang Pu Xue Yu Guang Pu Fen Xi = Guang Pu. 34: 2490-4. PMID 25532351 DOI: 10.3964/j.issn.1000-0593(2014)09-2490-05  0.52
2014 Chen F, Ren P, Feng Y, Liu H, Sun Y, Liu Z, Ge J, Cui X. Follistatin is a novel biomarker for lung adenocarcinoma in humans. Plos One. 9: e111398. PMID 25347573 DOI: 10.1371/journal.pone.0111398  0.68
2014 Marjolin A, Gourlaouen C, Clavaguéra C, Ren PY, Piquemal JP, Dognon JP. Hydration Gibbs free energies of open and closed shell trivalent lanthanide and actinide cations from polarizable molecular dynamics. Journal of Molecular Modeling. 20: 2471. PMID 25296890 DOI: 10.1007/s00894-014-2471-6  1
2014 Ren PL, Fan XJ, Yang XL, Liu MJ, Liu J, Huang JJ. [SIRT1 promote GTM cell DSBs repair and resist cellular senescence]. Sichuan Da Xue Xue Bao. Yi Xue Ban = Journal of Sichuan University. Medical Science Edition. 45: 572-7. PMID 25286678  0.64
2014 Cai K, Feng S, Wu H, Wang Y, Zhao H, Ren P, Zhang Z. Unidirectionally thoracoscopic resection of lingual segment of the left upper pulmonary lobe. Journal of Thoracic Disease. 6: 1358-63. PMID 25276384 DOI: 10.3978/j.issn.2072-1439.2014.08.12  0.44
2014 Ren P, Hu W, Zhang Q, Zhu X, Zhuang X, Ma L, Fan X, Zhou H, Liao L, Duan X, Pan A. Band-selective infrared photodetectors with complete-composition-range InAs(x)P(1-x) alloy nanowires. Advanced Materials (Deerfield Beach, Fla.). 26: 7444-9. PMID 25257177 DOI: 10.1002/adma.201402945  0.4
2014 Ren PT, Lu BC, Yu JH, Zhu X. Management of bile duct injuries combined with accessory hepatic duct during laparoscopic cholecystectomy. World Journal of Gastroenterology : Wjg. 20: 12363-6. PMID 25232275 DOI: 10.3748/wjg.v20.i34.12363  0.56
2014 Devkota AK, Edupuganti R, Yan C, Shi Y, Jose J, Wang Q, Kaoud TS, Cho EJ, Ren P, Dalby KN. Reversible covalent inhibition of eEF-2K by carbonitriles. Chembiochem : a European Journal of Chemical Biology. 15: 2435-42. PMID 25224652 DOI: 10.1002/cbic.201402321  1
2014 Lin C, Liu A, Zhu J, Zhang X, Wu G, Ren P, Wu J, Li M, Li J, Song L. miR-508 sustains phosphoinositide signalling and promotes aggressive phenotype of oesophageal squamous cell carcinoma. Nature Communications. 5: 4620. PMID 25099196 DOI: 10.1038/ncomms5620  0.68
2014 Edupuganti R, Wang Q, Tavares CD, Chitjian CA, Bachman JL, Ren P, Anslyn EV, Dalby KN. Synthesis and biological evaluation of pyrido[2,3-d]pyrimidine-2,4-dione derivatives as eEF-2K inhibitors. Bioorganic & Medicinal Chemistry. 22: 4910-6. PMID 25047940 DOI: 10.1016/j.bmc.2014.06.050  1
2014 Lv MM, Cheng YC, Xiao ZB, Sun MY, Ren PC, Sun XD. Down-regulation of Homer1b/c attenuates group I metabotropic glutamate receptors dependent Ca²⁺ signaling through regulating endoplasmic reticulum Ca²⁺ release in PC12 cells. Biochemical and Biophysical Research Communications. 450: 1568-74. PMID 25026550 DOI: 10.1016/j.bbrc.2014.07.044  0.32
2014 Abella JR, Cheng SY, Wang Q, Yang W, Ren P. Hydration Free Energy from Orthogonal Space Random Walk and Polarizable Force Field. Journal of Chemical Theory and Computation. 10: 2792-2801. PMID 25018674 DOI: 10.1021/ct500202q  1
2014 Tavares CD, Ferguson SB, Giles DH, Wang Q, Wellmann RM, O'Brien JP, Warthaka M, Brodbelt JS, Ren P, Dalby KN. The molecular mechanism of eukaryotic elongation factor 2 kinase activation. The Journal of Biological Chemistry. 289: 23901-16. PMID 25012662 DOI: 10.1074/jbc.M114.577148  1
2014 Ren P, Li L, Chen L, Niu H, Fan Y. [Design of mobile vital-signs monitoring system for the elderly in nursing home]. Zhongguo Yi Liao Qi Xie Za Zhi = Chinese Journal of Medical Instrumentation. 38: 110-3. PMID 24941773  0.6
2014 Pei BX, Sun BS, Zhang ZF, Wang AL, Ren P. Interstitial tumor-associated macrophages combined with tumor-derived colony-stimulating factor-1 and interleukin-6, a novel prognostic biomarker in non-small cell lung cancer. The Journal of Thoracic and Cardiovascular Surgery. 148: 1208-1216.e2. PMID 24907005 DOI: 10.1016/j.jtcvs.2014.05.003  0.48
2014 Wu Y, Lv Q, Xie MX, Wan LY, Ren PP, Ge A, Ge S. Fetal echocardiographic characteristics of fused heart in thoracopagus conjoined twins. Echocardiography (Mount Kisco, N.Y.). 31: E218-21. PMID 24814222 DOI: 10.1111/echo.12622  0.4
2014 Eckes KM, Mu X, Ruehle MA, Ren P, Suggs LJ. β sheets not required: combined experimental and computational studies of self-assembly and gelation of the ester-containing analogue of an Fmoc-dipeptide hydrogelator. Langmuir : the Acs Journal of Surfaces and Colloids. 30: 5287-96. PMID 24786493 DOI: 10.1021/la500679b  1
2014 Qin JJ, Wang XR, Wang P, Ren PF, Shi JX, Zhang HF, Xia JF, Wang KJ, Song CH, Dai LP, Zhang JY. Mini-array of multiple tumor-associated antigens (TAAs) in the immunodiagnosis of esophageal cancer. Asian Pacific Journal of Cancer Prevention : Apjcp. 15: 2635-40. PMID 24761876  0.44
2014 Cheung CW, Ren P, Hu X. Mild and phosphine-free iron-catalyzed cross-coupling of nonactivated secondary alkyl halides with alkynyl Grignard reagents. Organic Letters. 16: 2566-9. PMID 24754234 DOI: 10.1021/ol501087m  0.32
2014 Wang Q, Park J, Devkota AK, Cho EJ, Dalby KN, Ren P. Identification and validation of novel PERK inhibitors. Journal of Chemical Information and Modeling. 54: 1467-75. PMID 24745945 DOI: 10.1021/ci500114r  1
2014 Shen H, Li Y, Ren P, Zhang D, Li G. An Anisotropic Coarse-Grained Model for Proteins Based On Gay-Berne and Electric Multipole Potentials. Journal of Chemical Theory and Computation. 10: 731-750. PMID 24659927 DOI: 10.1021/ct400974z  1
2014 Gong L, Wei LX, Ren P, Zhang WD, Liu XY, Han XJ, Yao L, Zhu SJ, Lan M, Li YH, Zhang W. Dysplastic nodules with glypican-3 positive immunostaining: a risk for early hepatocellular carcinoma. Plos One. 9: e87120. PMID 24498024 DOI: 10.1371/journal.pone.0087120  0.64
2014 Mu X, Wang Q, Wang LP, Fried SD, Piquemal JP, Dalby KN, Ren P. Modeling organochlorine compounds and the σ-hole effect using a polarizable multipole force field. The Journal of Physical Chemistry. B. 118: 6456-65. PMID 24484473 DOI: 10.1021/jp411671a  1
2014 Liu X, Chai Y, Li J, Ren P, Liu M, Dai L, Qian W, Li W, Zhang JY. Autoantibody response to a novel tumor-associated antigen p90/CIP2A in breast cancer immunodiagnosis. Tumour Biology : the Journal of the International Society For Oncodevelopmental Biology and Medicine. 35: 2661-7. PMID 24399648 DOI: 10.1007/s13277-013-1350-6  0.68
2014 Ren P, Sheng Z, Wang Y, Yi X, Zhou Q, Zhou J, Xiang S, Hu X, Zhang J. RNF20 promotes the polyubiquitination and proteasome-dependent degradation of AP-2α protein. Acta Biochimica Et Biophysica Sinica. 46: 136-40. PMID 24374663 DOI: 10.1093/abbs/gmt136  0.72
2014 Cisneros GA, Karttunen M, Ren P, Sagui C. Classical electrostatics for biomolecular simulations. Chemical Reviews. 114: 779-814. PMID 23981057 DOI: 10.1021/cr300461d  1
2014 Lipparini F, Lagardère L, Stamm B, Cancès E, Schnieders M, Ren P, Maday Y, Piquemal JP. Scalable evaluation of polarization energy and associated forces in polarizable molecular dynamics: I. Toward massively parallel direct space computations Journal of Chemical Theory and Computation. 10: 1638-1651. DOI: 10.1021/ct401096t  1
2013 Liu C, Xu HH, Zou QY, Guo X, Liu ZZ, Luo ZQ, Li Y, Qi J, Liu J, Ren PY, Fan YY. [Treatment of unstable lumbar intervertebral disc herniation by modified lamina osteotomy replantation]. Zhongguo Gu Shang = China Journal of Orthopaedics and Traumatology. 26: 918-22. PMID 24605743  1
2013 Cai K, Ren P, Feng S, Wu H, Huang Z, Wang H, Xiong G, Zhang Z. Unidirectionally progressive left pneumonectomy & mediastinal lymph node dissection. Journal of Thoracic Disease. 5: 886-91. PMID 24416507 DOI: 10.3978/j.issn.2072-1439.2013.11.36  0.44
2013 Fried SD, Wang LP, Boxer SG, Ren P, Pande VS. Calculations of the electric fields in liquid solutions. The Journal of Physical Chemistry. B. 117: 16236-48. PMID 24304155 DOI: 10.1021/jp410720y  1
2013 Shi Y, Xia Z, Zhang J, Best R, Wu C, Ponder JW, Ren P. The Polarizable Atomic Multipole-based AMOEBA Force Field for Proteins. Journal of Chemical Theory and Computation. 9: 4046-4063. PMID 24163642 DOI: 10.1021/ct4003702  1
2013 Dykstra DW, Dalby KN, Ren P. Elucidating binding modes of zuonin A enantiomers to JNK1 via in silico methods. Journal of Molecular Graphics & Modelling. 45: 38-44. PMID 24001752 DOI: 10.1016/j.jmgm.2013.08.008  1
2013 Wang LP, Head-Gordon T, Ponder JW, Ren P, Chodera JD, Eastman PK, Martinez TJ, Pande VS. Systematic improvement of a classical molecular model of water. The Journal of Physical Chemistry. B. 117: 9956-72. PMID 23750713 DOI: 10.1021/jp403802c  1
2013 Xia Z, Bell DR, Shi Y, Ren P. RNA 3D structure prediction by using a coarse-grained model and experimental data. The Journal of Physical Chemistry. B. 117: 3135-44. PMID 23438338 DOI: 10.1021/jp400751w  1
2013 Xia Z, Huynh T, Ren P, Zhou R. Large domain motions in Ago protein controlled by the guide DNA-strand seed region determine the Ago-DNA-mRNA complex recognition process. Plos One. 8: e54620. PMID 23382927 DOI: 10.1371/journal.pone.0054620  1
2013 Wu X, Shi Y, Ren P, Wang D, Li G. Exploring the relationship between sequences, structures, dynamical behaviors and functions of new type protein drugs: DARPins. Current Pharmaceutical Design. 19: 2308-17. PMID 23082980 DOI: 10.2174/1381612811319120017  1
2013 Fu T, Ren H, Zhang J, Ren P, Enyedy I, Li G. Role of bivalent cations in structural stabilities of new drug targets--vaccinia-related kinases (VRK) from molecular dynamics simulations. Current Pharmaceutical Design. 19: 2269-81. PMID 23082977 DOI: 10.2174/1381612811319120014  1
2013 Bell DR, Xia Z, Ren P. Multiscale modeling of RNA 3D structures Proceedings of the 2013 4th Annual Ornl Biomedical Sciences and Engineering Conference: Collaborative Biomedical Innovations, Bsec 2013. DOI: 10.1109/BSEC.2013.6618482  1
2012 Ren P, Chun J, Thomas DG, Schnieders MJ, Marucho M, Zhang J, Baker NA. Biomolecular electrostatics and solvation: a computational perspective. Quarterly Reviews of Biophysics. 45: 427-91. PMID 23217364 DOI: 10.1017/S003358351200011X  1
2012 Mu X, Eckes KM, Nguyen MM, Suggs LJ, Ren P. Experimental and computational studies reveal an alternative supramolecular structure for fmoc-dipeptide self-assembly. Biomacromolecules. 13: 3562-71. PMID 23020140 DOI: 10.1021/bm301007r  1
2012 Kaoud TS, Yan C, Mitra S, Tseng CC, Jose J, Taliaferro JM, Tuohetahuntila M, Devkota A, Sammons R, Park J, Park H, Shi Y, Hong J, Ren P, Dalby KN. From in Silico Discovery to intra-Cellular Activity: Targeting JNK-Protein Interactions with Small Molecules. Acs Medicinal Chemistry Letters. 3: 721-725. PMID 23002419 DOI: 10.1021/ml300129b  1
2012 Kaoud TS, Park H, Mitra S, Yan C, Tseng CC, Shi Y, Jose J, Taliaferro JM, Lee K, Ren P, Hong J, Dalby KN. Manipulating JNK signaling with (--)-zuonin A. Acs Chemical Biology. 7: 1873-83. PMID 22916726 DOI: 10.1021/cb300261e  1
2012 Zhang J, Yang W, Piquemal JP, Ren P. Modeling Structural Coordination and Ligand Binding in Zinc Proteins with a Polarizable Potential. Journal of Chemical Theory and Computation. 8: 1314-1324. PMID 22754403 DOI: 10.1021/ct200812y  1
2012 Xiong R, Cai XM, Wei J, Ren PY. Some insights into the binding mechanism of Aurora B kinase gained by molecular dynamics simulation. Journal of Molecular Modeling. 18: 4591-601. PMID 22643974 DOI: 10.1007/s00894-012-1453-9  1
2012 Schnieders MJ, Baltrusaitis J, Shi Y, Chattree G, Zheng L, Yang W, Ren P. The Structure, Thermodynamics and Solubility of Organic Crystals from Simulation with a Polarizable Force Field. Journal of Chemical Theory and Computation. 8: 1721-1736. PMID 22582032 DOI: 10.1021/ct300035u  1
2012 Wu JC, Chattree G, Ren P. Automation of AMOEBA polarizable force field parameterization for small molecules. Theoretical Chemistry Accounts. 131: 1138. PMID 22505837 DOI: 10.1007/s00214-012-1138-6  1
2012 Schnieders MJ, Kaoud TS, Yan C, Dalby KN, Ren P. Computational insights for the discovery of non-ATP competitive inhibitors of MAP kinases. Current Pharmaceutical Design. 18: 1173-85. PMID 22316156 DOI: 10.2174/138161212799436368  1
2012 Shi Y, Zhu CZ, Martin SF, Ren P. Probing the effect of conformational constraint on phosphorylated ligand binding to an SH2 domain using polarizable force field simulations. The Journal of Physical Chemistry. B. 116: 1716-27. PMID 22214214 DOI: 10.1021/jp210265d  1
2012 Chaudret R, De Courcy B, Marjolin A, Van Severen MC, Ren PY, Wu JC, Parisel O, Piquemal JP. Unraveling interactions in large complex systems using quantum chemistry interpretative techniques and new generation polarizable force fields Aip Conference Proceedings. 1504: 699-702. DOI: 10.1063/1.4771791  1
2012 Shen H, Xia Z, Li G, Ren P. A Review of Physics-Based Coarse-Grained Potentials for the Simulations of Protein Structure and Dynamics Annual Reports in Computational Chemistry. 8: 129-148. DOI: 10.1016/B978-0-444-59440-2.00005-3  1
2012 Marjolin A, Gourlaouen C, Clavaguéra C, Ren PY, Wu JC, Gresh N, Dognon JP, Piquemal JP. Toward accurate solvation dynamics of lanthanides and actinides in water using polarizable force fields: From gas-phase energetics to hydration free energies Theoretical Chemistry Accounts. 131: 1-14. DOI: 10.1007/s00214-012-1198-7  1
2011 Kryscio DR, Shi Y, Ren P, Peppas NA. Molecular docking simulations for macromolecularly imprinted polymers. Industrial & Engineering Chemistry Research. 50: 13877-13884. PMID 22287827 DOI: 10.1021/ie201858n  1
2011 Wu J, Zhen X, Shen H, Li G, Ren P. Gay-Berne and electrostatic multipole based coarse-grain potential in implicit solvent. The Journal of Chemical Physics. 135: 155104. PMID 22029338 DOI: 10.1063/1.3651626  1
2011 Ren P, Wu C, Ponder JW. Polarizable Atomic Multipole-based Molecular Mechanics for Organic Molecules. Journal of Chemical Theory and Computation. 7: 3143-3161. PMID 22022236 DOI: 10.1021/ct200304d  1
2011 Lee S, Warthaka M, Yan C, Kaoud TS, Ren P, Dalby KN. Examining docking interactions on ERK2 with modular peptide substrates. Biochemistry. 50: 9500-10. PMID 21955038 DOI: 10.1021/bi201103b  1
2011 Gardner DP, Ren P, Ozer S, Gutell RR. Statistical potentials for hairpin and internal loops improve the accuracy of the predicted RNA structure. Journal of Molecular Biology. 413: 473-83. PMID 21889515 DOI: 10.1016/j.jmb.2011.08.033  1
2011 Lee S, Warthaka M, Yan C, Kaoud TS, Piserchio A, Ghose R, Ren P, Dalby KN. A model of a MAPK•substrate complex in an active conformation: a computational and experimental approach. Plos One. 6: e18594. PMID 21494553 DOI: 10.1371/journal.pone.0018594  1
2011 Yang T, Wu JC, Yan C, Wang Y, Luo R, Gonzales MB, Dalby KN, Ren P. Virtual screening using molecular simulations. Proteins. 79: 1940-51. PMID 21491494 DOI: 10.1002/prot.23018  1
2011 Piserchio A, Warthaka M, Devkota AK, Kaoud TS, Lee S, Abramczyk O, Ren P, Dalby KN, Ghose R. Solution NMR insights into docking interactions involving inactive ERK2. Biochemistry. 50: 3660-72. PMID 21449613 DOI: 10.1021/bi2000559  1
2011 Yan C, Kaoud T, Lee S, Dalby KN, Ren P. Understanding the specificity of a docking interaction between JNK1 and the scaffolding protein JIP1. The Journal of Physical Chemistry. B. 115: 1491-502. PMID 21261310 DOI: 10.1021/jp1073522  1
2011 Shi Y, Wu C, Ponder JW, Ren P. Multipole electrostatics in hydration free energy calculations. Journal of Computational Chemistry. 32: 967-77. PMID 20925089 DOI: 10.1002/jcc.21681  1
2010 Wu JC, Piquemal JP, Chaudret R, Reinhardt P, Ren P. Polarizable molecular dynamics simulation of Zn(II) in water using the AMOEBA force field. Journal of Chemical Theory and Computation. 6: 2059-2070. PMID 21116445 DOI: 10.1021/ct100091j  1
2010 Fonner JM, Schmidt CE, Ren P. A Combined Molecular Dynamics and Experimental Study of Doped Polypyrrole. Polymer. 51: 4985-4993. PMID 21052521 DOI: 10.1016/j.polymer.2010.08.024  1
2010 Xia Z, Gardner DP, Gutell RR, Ren P. Coarse-grained model for simulation of RNA three-dimensional structures. The Journal of Physical Chemistry. B. 114: 13497-506. PMID 20883011 DOI: 10.1021/jp104926t  1
2010 Liu Y, Liu M, Liu J, Ren P. [In vitro study on physical and chemical properities of calcium phosphate cement/amifostine complex and on vitality of cultured cells]. Sheng Wu Yi Xue Gong Cheng Xue Za Zhi = Journal of Biomedical Engineering = Shengwu Yixue Gongchengxue Zazhi. 27: 337-41. PMID 20481315  0.64
2010 Yan C, Pattani V, Tunnell JW, Ren P. Temperature-induced unfolding of epidermal growth factor (EGF): insight from molecular dynamics simulation. Journal of Molecular Graphics & Modelling. 29: 2-12. PMID 20466569 DOI: 10.1016/j.jmgm.2010.03.011  1
2010 Callaway K, Waas WF, Rainey MA, Ren P, Dalby KN. Phosphorylation of the transcription factor Ets-1 by ERK2: rapid dissociation of ADP and phospho-Ets-1. Biochemistry. 49: 3619-30. PMID 20361728 DOI: 10.1021/bi100199q  1
2010 Zhang J, King CA, Dalby K, Ren P. Conformational preference of ChaK1 binding peptides: a molecular dynamics study. Pmc Biophysics. 3: 2. PMID 20180991 DOI: 10.1186/1757-5036-3-2  1
2010 Ponder JW, Wu C, Ren P, Pande VS, Chodera JD, Schnieders MJ, Haque I, Mobley DL, Lambrecht DS, DiStasio RA, Head-Gordon M, Clark GN, Johnson ME, Head-Gordon T. Current status of the AMOEBA polarizable force field. The Journal of Physical Chemistry. B. 114: 2549-64. PMID 20136072 DOI: 10.1021/jp910674d  1
2009 Shi Y, Jiao D, Schnieders MJ, Ren P. Trypsin-ligand binding free energy calculation with AMOEBA. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2009: 2328-31. PMID 19965178 DOI: 10.1109/IEMBS.2009.5335108  1
2009 Wu JC, Gardner DP, Ozer S, Gutell RR, Ren P. Correlation of RNA secondary structure statistics with thermodynamic stability and applications to folding. Journal of Molecular Biology. 391: 769-83. PMID 19540243 DOI: 10.1016/j.jmb.2009.06.036  1
2009 Jiao D, Zhang J, Duke RE, Li G, Schnieders MJ, Ren P. Trypsin-ligand binding free energies from explicit and implicit solvent simulations with polarizable potential. Journal of Computational Chemistry. 30: 1701-11. PMID 19399779 DOI: 10.1002/jcc.21268  1
2008 Golubkov PA, Wu JC, Ren P. A transferable coarse-grained model for hydrogen-bonding liquids. Physical Chemistry Chemical Physics : Pccp. 10: 2050-7. PMID 18688358 DOI: 10.1039/b715841f  1
2008 Jiao D, Golubkov PA, Darden TA, Ren P. Calculation of protein-ligand binding free energy by using a polarizable potential. Proceedings of the National Academy of Sciences of the United States of America. 105: 6290-5. PMID 18427113 DOI: 10.1073/pnas.0711686105  1
2008 Li HX, Hwang BY, Laxmikanthan G, Blaber SI, Blaber M, Golubkov PA, Ren P, Iverson BL, Georgiou G. Substrate specificity of human kallikreins 1 and 6 determined by phage display. Protein Science : a Publication of the Protein Society. 17: 664-72. PMID 18359858 DOI: 10.1110/ps.073333208  0.4
2008 Nguyen M, Suggs L, Ren P. Synthesis of polydepsipeptides for tissue engineering 8th World Biomaterials Congress 2008. 3: 1650.  1
2007 Zhang J, King M, Suggs L, Ren P. Molecular modeling of conformational properties of oligodepsipeptides. Biomacromolecules. 8: 3015-24. PMID 17877396 DOI: 10.1021/bm070244c  1
2007 Schnieders MJ, Baker NA, Ren P, Ponder JW. Polarizable atomic multipole solutes in a Poisson-Boltzmann continuum. The Journal of Chemical Physics. 126: 124114. PMID 17411115 DOI: 10.1063/1.2714528  1
2007 Rasmussen TD, Ren P, Ponder JW, Jensen F. Force field modeling of conformational energies: Importance of multipole moments and intramolecular polarization International Journal of Quantum Chemistry. 107: 1390-1395. DOI: 10.1002/qua.21278  1
2006 Jiao D, King C, Grossfield A, Darden TA, Ren P. Simulation of Ca2+ and Mg2+ solvation using polarizable atomic multipole potential. The Journal of Physical Chemistry. B. 110: 18553-9. PMID 16970483 DOI: 10.1021/jp062230r  1
2006 Golubkov PA, Ren P. Generalized coarse-grained model based on point multipole and Gay-Berne potentials. The Journal of Chemical Physics. 125: 64103. PMID 16942269 DOI: 10.1063/1.2244553  1
2006 Piquemal JP, Perera L, Cisneros GA, Ren P, Pedersen LG, Darden TA. Towards accurate solvation dynamics of divalent cations in water using the polarizable amoeba force field: From energetics to structure. The Journal of Chemical Physics. 125: 054511. PMID 16942230 DOI: 10.1063/1.2234774  1
2004 Ren P, Ponder JW. Temperature and pressure dependence of the AMOEBA water model Journal of Physical Chemistry B. 108: 13427-13437. DOI: 10.1021/jp0484332  1
2003 Grossfield A, Ren P, Ponder JW. Ion solvation thermodynamics from simulation with a polarizable force field. Journal of the American Chemical Society. 125: 15671-82. PMID 14664617 DOI: 10.1021/ja037005r  1
2003 Ren P, Ponder JW. Polarizable atomic multipole water model for molecular mechanics simulation Journal of Physical Chemistry B. 107: 5933-5947.  1
2002 Ren P, Ponder JW. Consistent treatment of inter- and intramolecular polarization in molecular mechanics calculations. Journal of Computational Chemistry. 23: 1497-506. PMID 12395419 DOI: 10.1002/jcc.10127  1
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