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Jeffrey David Orth - Publications

Affiliations: 
2012 Bioengineering University of California, San Diego, La Jolla, CA 
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10 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2013 Monk JM, Charusanti P, Aziz RK, Lerman JA, Premyodhin N, Orth JD, Feist AM, Palsson BØ. Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments. Proceedings of the National Academy of Sciences of the United States of America. 110: 20338-43. PMID 24277855 DOI: 10.1073/Pnas.1307797110  0.745
2013 Lee SY, Sohn SB, Kim HU, Park JM, Kim TY, Orth JD, Palsson BO. Genome-scale network modeling Systems Metabolic Engineering. 1-23. DOI: 10.1007/978-94-007-4534-6_1  0.464
2012 Lerman JA, Hyduke DR, Latif H, Portnoy VA, Lewis NE, Orth JD, Schrimpe-Rutledge AC, Smith RD, Adkins JN, Zengler K, Palsson BO. In silico method for modelling metabolism and gene product expression at genome scale. Nature Communications. 3: 929. PMID 22760628 DOI: 10.1038/Ncomms1928  0.662
2012 Orth JD, Palsson B. Gap-filling analysis of the iJO1366 Escherichia coli metabolic network reconstruction for discovery of metabolic functions Bmc Systems Biology. 6. PMID 22548736 DOI: 10.1186/1752-0509-6-30  0.64
2011 Orth JD, Conrad TM, Na J, Lerman JA, Nam H, Feist AM, Palsson BØ. A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011. Molecular Systems Biology. 7: 535. PMID 21988831 DOI: 10.1038/Msb.2011.65  0.761
2011 Schellenberger J, Que R, Fleming RM, Thiele I, Orth JD, Feist AM, Zielinski DC, Bordbar A, Lewis NE, Rahmanian S, Kang J, Hyduke DR, Palsson BØ. Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0. Nature Protocols. 6: 1290-307. PMID 21886097 DOI: 10.1038/Nprot.2011.308  0.682
2010 Orth JD, Fleming RM, Palsson BØ. Reconstruction and Use of Microbial Metabolic Networks: the Core Escherichia coli Metabolic Model as an Educational Guide. Ecosal Plus. 4. PMID 26443778 DOI: 10.1128/ecosalplus.10.2.1  0.609
2010 Orth JD, Palsson B. Systematizing the generation of missing metabolic knowledge Biotechnology and Bioengineering. 107: 403-412. PMID 20589842 DOI: 10.1002/Bit.22844  0.681
2010 Orth JD, Thiele I, Palsson BO. What is flux balance analysis? Nature Biotechnology. 28: 245-248. PMID 20212490 DOI: 10.1038/Nbt.1614  0.676
2010 Feist AM, Zielinski DC, Orth JD, Schellenberger J, Herrgard MJ, Palsson BO. Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli Metabolic Engineering. 12: 173-186. PMID 19840862 DOI: 10.1016/J.Ymben.2009.10.003  0.684
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