James M. Carothers - Publications

Affiliations: 
2006-2012 Chemical Biology University of California, Berkeley, Berkeley, CA 

15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Barajas JF, Wehrs M, To M, Cruickshanks L, Urban R, McKee A, Gladden J, Goh EB, Brown ME, Pierotti D, Carothers JM, Mukhopadhyay A, Keasling JD, Fortman JL, Singer SW, et al. Isolation and Characterization of Bacterial Cellulase Producers for Biomass Deconstruction: A Microbiology Laboratory Course. Journal of Microbiology & Biology Education. 20. PMID 31388393 DOI: 10.1128/jmbe.v20i2.1723  0.72
2015 Thimmaiah T, Voje WE, Carothers JM. Computational design of RNA parts, devices, and transcripts with kinetic folding algorithms implemented on multiprocessor clusters. Methods in Molecular Biology (Clifton, N.J.). 1244: 45-61. PMID 25487092 DOI: 10.1007/978-1-4939-1878-2_3  0.72
2014 Goler JA, Carothers JM, Keasling JD. Dual-selection for evolution of in vivo functional aptazymes as riboswitch parts. Methods in Molecular Biology (Clifton, N.J.). 1111: 221-35. PMID 24549623 DOI: 10.1007/978-1-62703-755-6_16  0.72
2013 Carothers JM. Design-driven, multi-use research agendas to enable applied synthetic biology for global health. Systems and Synthetic Biology. 7: 79-86. PMID 24432145 DOI: 10.1007/s11693-013-9118-2  0.72
2013 Cambray G, Guimaraes JC, Mutalik VK, Lam C, Mai QA, Thimmaiah T, Carothers JM, Arkin AP, Endy D. Measurement and modeling of intrinsic transcription terminators. Nucleic Acids Research. 41: 5139-48. PMID 23511967 DOI: 10.1093/nar/gkt163  0.72
2012 Zhang F, Carothers JM, Keasling JD. Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids. Nature Biotechnology. 30: 354-9. PMID 22446695 DOI: 10.1038/nbt.2149  0.72
2011 Carothers JM, Goler JA, Juminaga D, Keasling JD. Model-driven engineering of RNA devices to quantitatively program gene expression. Science (New York, N.Y.). 334: 1716-9. PMID 22194579 DOI: 10.1126/science.1212209  0.72
2010 Carothers JM, Goler JA, Kapoor Y, Lara L, Keasling JD. Selecting RNA aptamers for synthetic biology: investigating magnesium dependence and predicting binding affinity. Nucleic Acids Research. 38: 2736-47. PMID 20159999 DOI: 10.1093/nar/gkq082  0.72
2009 Carothers JM, Goler JA, Keasling JD. Chemical synthesis using synthetic biology. Current Opinion in Biotechnology. 20: 498-503. PMID 19720519 DOI: 10.1016/j.copbio.2009.08.001  0.72
2007 Hazen RM, Griffin PL, Carothers JM, Szostak JW. Functional information and the emergence of biocomplexity Proceedings of the National Academy of Sciences of the United States of America. 104: 8574-8581. PMID 17494745 DOI: 10.1073/pnas.0701744104  0.72
2006 Carothers JM, Oestreich SC, Szostak JW. Aptamers selected for higher-affinity binding are not more specific for the target ligand Journal of the American Chemical Society. 128: 7929-7937. PMID 16771507 DOI: 10.1021/ja060952q  0.72
2006 Carothers JM, Davis JH, Chou JJ, Szostak JW. Solution structure of an informationally complex high-affinity RNA aptamer to GTP. Rna (New York, N.Y.). 12: 567-79. PMID 16510427 DOI: 10.1261/rna.2251306  0.72
2006 Carothers JM, Szostak JW. In Vitro Selection of Functional Oligonucleotides and the Origins of Biochemical Activity The Aptamer Handbook: Functional Oligonucleotides and Their Applications. 1-28. DOI: 10.1002/3527608192.ch1  0.72
2005 Plummer KA, Carothers JM, Yoshimura M, Szostak JW, Verdine GL. In vitro selection of RNA aptamers against a composite small molecule-protein surface. Nucleic Acids Research. 33: 5602-10. PMID 16199752 DOI: 10.1093/nar/gki867  0.72
2004 Carothers JM, Oestreich SC, Davis JH, Szostak JW. Informational complexity and functional activity of RNA structures. Journal of the American Chemical Society. 126: 5130-7. PMID 15099096 DOI: 10.1021/ja031504a  0.72
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