Yifan Liu, Ph.D. - Publications

Affiliations: 
University of Rochester, Rochester, NY 
Area:
the histone genes and tubulin genes of the ciliated protozoan Tetrahymena thermophila

53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Tian T, Zhang C, Li J, Liu Y, Wang Y, Ke X, Fan C, Lei H, Hao P, Li Q. Proteomic Exploration of Endocytosis of Framework Nucleic Acids. Small (Weinheim An Der Bergstrasse, Germany). e2100837. PMID 33893713 DOI: 10.1002/smll.202100837  0.44
2021 Qi J, Xing Y, Liu Y, Wang MM, Wei X, Sui Z, Ding L, Zhang Y, Lu C, Fei YH, Liu N, Chen R, Wu M, Wang L, Zhong Z, ... ... Liu Y, et al. MCOLN1/TRPML1 finely controls oncogenic autophagy in cancer by mediating zinc influx. Autophagy. 1-22. PMID 33890549 DOI: 10.1080/15548627.2021.1917132  0.32
2021 Liu Y, Nie N, Tang H, Zhang C, Chen K, Wang W, Liu J. Effective Antibacterial Activity of Degradable Copper-Doped Phosphate-Based Glass Nanozymes. Acs Applied Materials & Interfaces. PMID 33685118 DOI: 10.1021/acsami.0c22746  0.44
2021 Zhang J, Li T, Li X, Liu Y, Li N, Wang Y, Li X. A key role of inner-cation-π interaction in adsorption of Pb(II) on carbon nanotubes: Experimental and DFT studies. Journal of Hazardous Materials. 412: 125187. PMID 33545646 DOI: 10.1016/j.jhazmat.2021.125187  0.32
2021 Guo Q, Liu Y, Wang Z, Zhang J, Mu G, Wang W, Liu J. Supramolecular nanofibers increase the efficacy of 10-hydroxycamptothecin by enhancing nuclear accumulation and depleting cellular ATP. Acta Biomaterialia. PMID 33444804 DOI: 10.1016/j.actbio.2020.12.052  0.44
2021 Xu J, Zhao X, Mao F, Basrur V, Ueberheide B, Chait BT, Allis CD, Taverna SD, Gao S, Wang W, Liu Y. A Polycomb repressive complex is required for RNAi-mediated heterochromatin formation and dynamic distribution of nuclear bodies. Nucleic Acids Research. PMID 33412588 DOI: 10.1093/nar/gkaa1262  0.44
2020 Zhang Z, Liu J, Liu Y, Shi D, He Y, Zhao P. Virtual screening of the multi-gene regulatory molecular mechanism of Si-Wu-tang against non-triple-negative breast cancer based on network pharmacology combined with experimental validation. Journal of Ethnopharmacology. 269: 113696. PMID 33358854 DOI: 10.1016/j.jep.2020.113696  0.32
2020 Guo Q, Liu Y, Mu G, Yang L, Wang W, Liu J, Liu J. A peptide-drug hydrogel to enhance the anti-cancer activity of chlorambucil. Biomaterials Science. PMID 32945821 DOI: 10.1039/d0bm01001d  0.32
2020 Li S, Wu Y, Zhang C, Liu Y, Sun Q, Cui Y, Liu SF, Hao Y. Interface Modification of Perovskite/Hole Transport Layer with Tetraphenyldibenzoperiflanthene for Highly Efficient and Stable Solar Cells. Acs Applied Materials & Interfaces. PMID 32921039 DOI: 10.1021/acsami.0c12544  0.44
2020 Liu Y, Yu P, Hu X, Wang Z, Li Y, Gong L. Single-pixel spiral phase contrast imaging. Optics Letters. 45: 4028-4031. PMID 32667346 DOI: 10.1364/OL.396903  0.44
2020 Yang L, Zhang C, Lu H, Zheng Y, Liu Y. Experimental Investigation on the Imbibition Capacity and Its Influencing Factors in Hydrate Sediments. Acs Omega. 5: 14564-14574. PMID 32596594 DOI: 10.1021/acsomega.0c01269  0.44
2020 Li J, Yu D, Chen S, Liu Y, Shi J, Zhang J, Wen P, Wang Z, Li J, Guo W, Zhang S. Sirt6 opposes glycochenodeoxycholate-induced apoptosis of biliary epithelial cells through the AMPK/PGC-1α pathway. Cell & Bioscience. 10: 43. PMID 32206298 DOI: 10.1186/s13578-020-00402-6  0.44
2019 Huang Y, Liu B, Meng F, Wang Q, Zhu K, Zhang J, Jing F, Xia L, Liu Y. The complete mitochondrial genome of ( Cyprinodontidae) and phylogenetic studies of cyprinodontiformes. Mitochondrial Dna. Part B, Resources. 4: 3820-3821. PMID 33366203 DOI: 10.1080/23802359.2019.1681308  0.32
2019 Ma C, Li J, Zhang B, Liu C, Zhang J, Liu Y. Hydrogel Microparticles Functionalized with Engineered as Living Lactam Biosensors. Sensors (Basel, Switzerland). 19. PMID 31888205 DOI: 10.3390/s19245556  0.32
2019 Liu Y, Wang W, Shah SB, Zanaroli G, Xu P, Tang H. Phenol biodegradation by Acinetobacter radioresistens APH1 and its application in soil bioremediation. Applied Microbiology and Biotechnology. PMID 31822982 DOI: 10.1007/s00253-019-10271-w  0.32
2019 Wang Y, Sheng Y, Liu Y, Zhang W, Cheng T, Duan L, Pan B, Qiao Y, Liu Y, Gao S. A distinct class of eukaryotic MT-A70 methyltransferases maintain symmetric DNA N6-adenine methylation at the ApT dinucleotides as an epigenetic mark associated with transcription. Nucleic Acids Research. PMID 31722409 DOI: 10.1093/Nar/Gkz1053  0.44
2019 Zhang X, Wan F, You W, Tan X, Liu G, Jin Q, Wei C, Liu X, Zhao H, Liu Y, Zhang C. Comparison of apoptosis between bovine subcutaneous and intramuscular adipocytes by resveratrol via SIRT1. Animal Biotechnology. 1-9. PMID 31287374 DOI: 10.1080/10495398.2019.1636808  0.44
2019 Xiong J, Yang W, Chen K, Jiang C, Ma Y, Chai X, Yan G, Wang G, Yuan D, Liu Y, Bidwell SL, Zafar N, Hadjithomas M, Krishnakumar V, Coyne RS, et al. Hidden genomic evolution in a morphospecies-The landscape of rapidly evolving genes in Tetrahymena. Plos Biology. 17: e3000294. PMID 31158217 DOI: 10.1371/Journal.Pbio.3000294  0.56
2019 Zhao X, Xiong J, Mao F, Sheng Y, Chen X, Feng L, Dui W, Yang W, Kapusta A, Feschotte C, Coyne RS, Miao W, Gao S, Liu Y. RNAi-dependent repression controls transposable elements in . Genes & Development. PMID 30808657 DOI: 10.1101/Gad.320796.118  0.56
2018 Lu J, Shen X, Sun X, Yin H, Yang S, Lu C, Wang Y, Liu Y, Huang Y, Yang Z, Dong X, Wang C, Guo Q, Zhao L, Sun X, et al. Increased recruitment of endogenous stem cells and chondrogenic differentiation by a composite scaffold containing bone marrow homing peptide for cartilage regeneration. Theranostics. 8: 5039-5058. PMID 30429885 DOI: 10.7150/Thno.26981  0.32
2018 Liu Y, Chen X, Zhang Y, Liu J. Advancing single-cell proteomics and metabolomics with microfluidic technologies. The Analyst. PMID 30351310 DOI: 10.1039/C8An01503A  0.32
2018 Wang W, Yu H, Liu Y, Jiang X, Gao B. Trueness analysis of zirconia crowns fabricated with 3-dimensional printing. The Journal of Prosthetic Dentistry. PMID 30017167 DOI: 10.1016/j.prosdent.2018.04.012  0.32
2018 Liu Y, Dou Y. Re-SET for Transcription. Molecular Cell. 70: 985-986. PMID 29932907 DOI: 10.1016/j.molcel.2018.06.010  1
2017 Wang Y, Chen X, Sheng Y, Liu Y, Gao S. N6-adenine DNA methylation is associated with the linker DNA of H2A.Z-containing well-positioned nucleosomes in Pol II-transcribed genes in Tetrahymena. Nucleic Acids Research. PMID 29036602 DOI: 10.1093/Nar/Gkx883  0.44
2017 Feng C, Xu S, Liu Y, Wang Y, Wang W, Yang J, Zhao C, Liu Q, Li J. Progestin is important for testicular development of male turbot (Scophthalmus maximus) during the annual reproductive cycle through functionally distinct progestin receptors. Fish Physiology and Biochemistry. PMID 28986724 DOI: 10.1007/s10695-017-0411-y  0.32
2017 Feng L, Wang G, Hamilton EP, Xiong J, Yan G, Chen K, Chen X, Dui W, Plemens A, Khadr L, Dhanekula A, Juma M, Dang HQ, Kapler GM, Orias E, ... ... Liu Y, et al. A germline-limited piggyBac transposase gene is required for precise excision in Tetrahymena genome rearrangement. Nucleic Acids Research. 45: 9481-9502. PMID 28934495 DOI: 10.1093/Nar/Gkx652  0.56
2017 Suhren JH, Noto T, Kataoka K, Gao S, Liu Y, Mochizuki K. Negative Regulators of an RNAi-Heterochromatin Positive Feedback Loop Safeguard Somatic Genome Integrity in Tetrahymena. Cell Reports. 18: 2494-2507. PMID 28273462 DOI: 10.1016/J.Celrep.2017.02.024  0.6
2016 Zhao X, Wang Y, Wang Y, Liu Y, Gao S. Histone methyltransferase TXR1 is required for both H3 and H3.3 lysine 27 methylation in the well-known ciliated protist Tetrahymena thermophila. Science China. Life Sciences. PMID 27761696 DOI: 10.1007/S11427-016-0183-1  1
2016 Chen X, Gao S, Liu Y, Wang Y, Wang Y, Song W. Enzymatic and chemical mapping of nucleosome distribution in purified micro- and macronuclei of the ciliated model organism, Tetrahymena thermophila. Science China. Life Sciences. PMID 27568393 DOI: 10.1007/S11427-016-5102-X  1
2016 Xiong J, Gao S, Dui W, Yang W, Chen X, Taverna SD, Pearlman RE, Ashlock W, Miao W, Liu Y. Dissecting relative contributions of cis- and trans-determinants to nucleosome distribution by comparing Tetrahymena macronuclear and micronuclear chromatin. Nucleic Acids Research. PMID 27488188 DOI: 10.1093/Nar/Gkw684  0.56
2016 Zhang F, Liu Y, Zhang Z, Li J, Wan Y, Zhang L, Wang Y, Li X, Xu Y, Fu X, Zhang X, Zhang M, Zhang Z, Zhang J, Yan Q, et al. 5-hydroxymethylcytosine loss is associated with poor prognosis for patients with WHO grade II diffuse astrocytomas. Scientific Reports. 6: 20882. PMID 26864347 DOI: 10.1038/srep20882  0.44
2015 Wang Z, Li R, Liu Y, Liu X, Chen W, Xu S, Guo Y, Duan J, Chen Y, Wang C. Protective effects of edaravone combined puerarin on inhalation lung injury induced by black gunpowder smog. International Immunopharmacology. 26: 125-32. PMID 25754765 DOI: 10.1016/j.intimp.2015.02.034  0.44
2014 Papazyan R, Voronina E, Chapman JR, Luperchio TR, Gilbert TM, Meier E, Mackintosh SG, Shabanowitz J, Tackett AJ, Reddy KL, Coyne RS, Hunt DF, Liu Y, Taverna SD. Methylation of histone H3K23 blocks DNA damage in pericentric heterochromatin during meiosis. Elife. 3: e02996. PMID 25161194 DOI: 10.7554/Elife.02996  1
2014 Zhang C, Gao S, Molascon AJ, Wang Z, Gorovsky MA, Liu Y, Andrews PC. Bioinformatic and proteomic analysis of bulk histones reveals PTM crosstalk and chromatin features. Journal of Proteome Research. 13: 3330-7. PMID 24894457 DOI: 10.1021/Pr5001829  1
2014 Liu Y, Ma D, Zhao C, Wang W, Zhang X, Liu X, Liu Y, Xiao Z, Xu S, Xiao Y, Liu Q, Li J. Histological and enzymatic responses of Japanese flounder (Paralichthys olivaceus) and its hybrids (P. olivaceus ♀ × P. dentatus ♂) to chronic heat stress. Fish Physiology and Biochemistry. 40: 1031-41. PMID 24390013 DOI: 10.1007/s10695-013-9903-6  0.32
2014 Zhang C, Gao S, Molascon AJ, Liu Y, Andrews PC. Quantitative proteomics reveals histone modifications in crosstalk with H3 lysine 27 methylation. Molecular & Cellular Proteomics : McP. 13: 749-59. PMID 24382802 DOI: 10.1074/Mcp.M113.029025  1
2013 Gao S, Xiong J, Zhang C, Berquist BR, Yang R, Zhao M, Molascon AJ, Kwiatkowski SY, Yuan D, Qin Z, Wen J, Kapler GM, Andrews PC, Miao W, Liu Y. Impaired replication elongation in Tetrahymena mutants deficient in histone H3 Lys 27 monomethylation. Genes & Development. 27: 1662-79. PMID 23884606 DOI: 10.1101/Gad.218966.113  1
2013 Zhang C, Liu Y, Andrews PC. Quantification of histone modifications using ¹⁵N metabolic labeling. Methods (San Diego, Calif.). 61: 236-43. PMID 23454290 DOI: 10.1016/J.Ymeth.2013.02.004  1
2013 Zhang C, Molascon AJ, Gao S, Liu Y, Andrews PC. Quantitative proteomics reveals that the specific methyltransferases Txr1p and Ezl2p differentially affect the mono-, di- and trimethylation states of histone H3 lysine 27 (H3K27). Molecular & Cellular Proteomics : McP. 12: 1678-88. PMID 23150054 DOI: 10.1074/Mcp.M112.021733  1
2012 Gao S, Liu Y. Intercepting noncoding messages between germline and soma. Genes & Development. 26: 1774-9. PMID 22895251 DOI: 10.1101/Gad.199992.112  1
2012 Song X, Bowen J, Miao W, Liu Y, Gorovsky MA. The nonhistone, N-terminal tail of an essential, chimeric H2A variant regulates mitotic H3-S10 dephosphorylation Genes and Development. 26: 615-629. PMID 22426537 DOI: 10.1101/Gad.182683.111  1
2011 Xiong J, Yuan D, Fillingham JS, Garg J, Lu X, Chang Y, Liu Y, Fu C, Pearlman RE, Miao W. Gene network landscape of the ciliate Tetrahymena thermophila. Plos One. 6: e20124. PMID 21637855 DOI: 10.1371/Journal.Pone.0020124  1
2010 Cao F, Chen Y, Cierpicki T, Liu Y, Basrur V, Lei M, Dou Y. An Ash2L/RbBP5 heterodimer stimulates the MLL1 methyltransferase activity through coordinated substrate interactions with the MLL1 SET domain. Plos One. 5: e14102. PMID 21124902 DOI: 10.1371/Journal.Pone.0014102  1
2009 Cao F, Li X, Hiew S, Brady H, Liu Y, Dou Y. Dicer independent small RNAs associate with telomeric heterochromatin. Rna (New York, N.Y.). 15: 1274-81. PMID 19460867 DOI: 10.1261/Rna.1423309  1
2009 Miao W, Xiong J, Bowen J, Wang W, Liu Y, Braguinets O, Grigull J, Pearlman RE, Orias E, Gorovsky MA. Microarray analyses of gene expression during the Tetrahymena thermophila life cycle. Plos One. 4: e4429. PMID 19204800 DOI: 10.1371/Journal.Pone.0004429  1
2008 Coyne RS, Thiagarajan M, Jones KM, Wortman JR, Tallon LJ, Haas BJ, Cassidy-Hanley DM, Wiley EA, Smith JJ, Collins K, Lee SR, Couvillion MT, Liu Y, Garg J, Pearlman RE, et al. Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure. Bmc Genomics. 9: 562. PMID 19036158 DOI: 10.1186/1471-2164-9-562  1
2007 Liu Y, Taverna SD, Muratore TL, Shabanowitz J, Hunt DF, Allis CD. RNAi-dependent H3K27 methylation is required for heterochromatin formation and DNA elimination in Tetrahymena. Genes & Development. 21: 1530-45. PMID 17575054 DOI: 10.1101/Gad.1544207  1
2007 Taverna SD, Ueberheide BM, Liu Y, Tackett AJ, Diaz RL, Shabanowitz J, Chait BT, Hunt DF, Allis CD. Long-distance combinatorial linkage between methylation and acetylation on histone H3 N termini. Proceedings of the National Academy of Sciences of the United States of America. 104: 2086-91. PMID 17284592 DOI: 10.1073/Pnas.0610993104  1
2006 Cui B, Liu Y, Gorovsky MA. Deposition and function of histone H3 variants in Tetrahymena thermophila Molecular and Cellular Biology. 26: 7719-7730. PMID 16908532 DOI: 10.1128/Mcb.01139-06  1
2005 Dou Y, Song X, Liu Y, Gorovsky MA. The H1 phosphorylation state regulates expression of CDC2 and other genes in response to starvation in Tetrahymena thermophila Molecular and Cellular Biology. 25: 3914-3922. PMID 15870266 DOI: 10.1128/Mcb.25.10.3914-3922.2005  1
2005 Liu Y, Song X, Gorovsky MA, Karrer KM. Elimination of foreign DNA during somatic differentiation in Tetrahymena thermophila shows position effect and is dosage dependent Eukaryotic Cell. 4: 421-431. PMID 15701804 DOI: 10.1128/Ec.4.2.421-431.2005  1
2004 Liu Y, Mochizuki K, Gorovsky MA. Histone H3 lysine 9 methylation is required for DNA elimination in developing macronuclei in Tetrahymena Proceedings of the National Academy of Sciences of the United States of America. 101: 1679-1684. PMID 14755052 DOI: 10.1073/Pnas.0305421101  1
2002 Dou Y, Bowen J, Liu Y, Gorovsky MA. Phosphorylation and an ATP-dependent process increase the dynamic exchange of H1 in chromatin Journal of Cell Biology. 158: 1161-1170. PMID 12356861 DOI: 10.1083/Jcb.200202131  1
Show low-probability matches.