Xiaoyuan Song, Ph.D. - Publications

Affiliations: 
University of Rochester, Rochester, NY 
Area:
the histone genes and tubulin genes of the ciliated protozoan Tetrahymena thermophila

31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Wagner T, Priyanka P, Micheletti R, Friedman MJ, Nair SJ, Gamliel A, Taylor H, Song X, Cho M, Oh S, Li W, Han J, Ohgi KA, Abrass M, D'Antonio-Chronowska A, et al. Recruitment of CTCF to the SIRT1 promoter after Oxidative Stress mediates Cardioprotective Transcription. Biorxiv : the Preprint Server For Biology. PMID 38798402 DOI: 10.1101/2024.05.17.594600  0.749
2020 Luo Z, Wang X, Jiang H, Wang R, Chen J, Chen Y, Xu Q, Cao J, Gong X, Wu J, Yang Y, Li W, Han C, Cheng CY, Rosenfeld MG, ... ... Song X, et al. Reorganized 3D Genome Structures Support Transcriptional Regulation in Mouse Spermatogenesis. Iscience. 23: 101034. PMID 32315832 DOI: 10.1016/J.Isci.2020.101034  0.618
2020 Cheng Q, Ouyang X, Zhang R, Zhu L, Song X. Senescence-associated genes and non-coding RNAs function in pancreatic cancer progression. Rna Biology. 1-14. PMID 31997706 DOI: 10.1080/15476286.2020.1719752  0.334
2019 Wang F, Ren D, Liang X, Ke S, Zhang B, Hu B, Song X, Wang X. A long noncoding RNA cluster-based genomic locus maintains proper development and visual function. Nucleic Acids Research. PMID 31127312 DOI: 10.1093/Nar/Gkz444  0.487
2017 Ghanam AR, Xu Q, Ke S, Azhar M, Cheng Q, Song X. Shining the Light on Senescence Associated LncRNAs. Aging and Disease. 8: 149-161. PMID 28400982 DOI: 10.14336/Ad.2016.0810  0.31
2016 Xu Q, Wang R, Ghanam AR, Yan G, Miao W, Song X. The key role of CYC2 during meiosis in Tetrahymena thermophila. Protein & Cell. PMID 27008457 DOI: 10.1007/S13238-016-0254-9  0.368
2016 Yang Y, Su Z, Song X, Liang B, Zeng F, Chang X, Huang D. Enhancer RNA-driven looping enhances the transcription of the long noncoding RNA DHRS4-AS1, a controller of the DHRS4 gene cluster. Scientific Reports. 6: 20961. PMID 26864944 DOI: 10.1038/srep20961  0.349
2016 Zhao Y, Song X, Cai L, Liu Z, Cheng Q. Surface fractal topography-based contact stiffness determination of spindle-toolholder joint Proceedings of the Institution of Mechanical Engineers, Part C: Journal of Mechanical Engineering Science. 230: 602-610. DOI: 10.1177/0954406215578483  0.305
2016 Tian Y, Song X, Xie Z, Gao J, Dou Y, Li B, Lin J, Tomie T. Sharpening of the 6.8 nm peak in an Nd:YAG laser produced Gd plasma by using a pre-formed plasma Aip Advances. 6. DOI: 10.1063/1.4943976  0.343
2015 Yang RH, Tian RF, Ren QL, Chui HY, Guo ST, Zhang XD, Song X. Serum protein profiles of patients with lung cancer of different histological types. Asia-Pacific Journal of Clinical Oncology. PMID 26668125 DOI: 10.1111/ajco.12441  0.382
2015 Ablikim M, Achasov MN, Ai XC, Albayrak O, Albrecht M, Ambrose DJ, Amoroso A, An FF, An Q, Bai JZ, Ferroli RB, Ban Y, Bennett DW, Bennett JV, Bertani M, ... Song XY, et al. Observation of a Neutral Structure near the DD[over ¯]^{*} Mass Threshold in e^{+}e^{-}→(DD[over ¯]^{*})^{0}π^{0} at sqrt[s]=4.226 and 4.257 GeV. Physical Review Letters. 115: 222002. PMID 26650295 DOI: 10.1103/Physrevlett.115.222002  0.388
2015 Ablikim M, Achasov MN, Ai XC, Albayrak O, Albrecht M, Ambrose DJ, Amoroso A, An FF, An Q, Bai JZ, Baldini Ferroli R, Ban Y, Bennett DW, Bennett JV, Bertani M, ... Song XY, et al. Measurement of the Absolute Branching Fraction for Λ_{c}^{+}→Λe^{+}ν_{e}. Physical Review Letters. 115: 221805. PMID 26650293 DOI: 10.1103/Physrevlett.115.221805  0.393
2015 Song Q, Wang X, Wang Y, Liang Y, Zhou Y, Song X, He B, Zhang H, Dai W, Wang X, Zhang Q. Reduction responsive self-assembled nanoparticles based on disulfide-linked drug-drug conjugate with high drug loading and antitumor efficacy. Molecular Pharmaceutics. PMID 26629710 DOI: 10.1021/acs.molpharmaceut.5b00631  0.329
2015 Xie L, Song X, Guo W, Wang X, Wei L, Li Y, Lv L, Wang W, Chen TC, Song X. Therapeutic effect of TMZ-POH on human nasopharyngeal carcinoma depends on reactive oxygen species accumulation. Oncotarget. PMID 26625208 DOI: 10.18632/oncotarget.6410  0.41
2015 Zheng W, Wang L, Yang D, Fang K, Chen X, Wang X, Li X, Li Z, Song X, Wang J. Primary extragonadal germ cell tumor: A case report on prostate seminoma. Oncology Letters. 10: 2323-2326. PMID 26622843 DOI: 10.3892/ol.2015.3592  0.322
2015 Li Z, Yao G, Wu R, Gao L, Kan Q, Liu M, Yang P, Liu G, Qin Y, Song X, Zhong Y, Fang X, Qu Y. Synergistic and Dose-Controlled Regulation of Cellulase Gene Expression in Penicillium oxalicum. Plos Genetics. 11: e1005509. PMID 26360497 DOI: 10.1371/journal.pgen.1005509  0.32
2015 Li W, Hu Y, Oh S, Ma Q, Merkurjev D, Song X, Zhou X, Liu Z, Tanasa B, He X, Chen AY, Ohgi K, Zhang J, Liu W, Rosenfeld MG. Condensin I and II Complexes License Full Estrogen Receptor α-Dependent Enhancer Activation. Molecular Cell. 59: 188-202. PMID 26166704 DOI: 10.1016/J.Molcel.2015.06.002  0.76
2015 Cao J, Luo Z, Cheng Q, Xu Q, Zhang Y, Wang F, Wu Y, Song X. Three-dimensional regulation of transcription. Protein & Cell. 6: 241-53. PMID 25670626 DOI: 10.1007/S13238-015-0135-7  0.413
2015 Zhang F, Tanasa B, Merkurjev D, Lin C, Song X, Li W, Tan Y, Liu Z, Zhang J, Ohgi KA, Krones A, Skowronska-Krawczyk D, Rosenfeld MG. Enhancer-bound LDB1 regulates a corticotrope promoter-pausing repression program. Proceedings of the National Academy of Sciences of the United States of America. 112: 1380-5. PMID 25605944 DOI: 10.1073/Pnas.1424228112  0.666
2014 Liu Z, Merkurjev D, Yang F, Li W, Oh S, Friedman MJ, Song X, Zhang F, Ma Q, Ohgi KA, Krones A, Rosenfeld MG. Enhancer activation requires trans-recruitment of a mega transcription factor complex. Cell. 159: 358-73. PMID 25303530 DOI: 10.1016/J.Cell.2014.08.027  0.76
2013 Li W, Notani D, Ma Q, Tanasa B, Nunez E, Chen AY, Merkurjev D, Zhang J, Ohgi K, Song X, Oh S, Kim HS, Glass CK, Rosenfeld MG. Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation. Nature. 498: 516-20. PMID 23728302 DOI: 10.1038/Nature12210  0.755
2012 Song X, Bowen J, Miao W, Liu Y, Gorovsky MA. The nonhistone, N-terminal tail of an essential, chimeric H2A variant regulates mitotic H3-S10 dephosphorylation Genes and Development. 26: 615-629. PMID 22426537 DOI: 10.1101/Gad.182683.111  0.639
2012 Song X, Wang X, Arai S, Kurokawa R. Promoter-associated noncoding RNA from the CCND1 promoter. Methods in Molecular Biology (Clifton, N.J.). 809: 609-22. PMID 22113303 DOI: 10.1007/978-1-61779-376-9_39  0.49
2011 Harismendy O, Notani D, Song X, Rahim NG, Tanasa B, Heintzman N, Ren B, Fu XD, Topol EJ, Rosenfeld MG, Frazer KA. 9p21 DNA variants associated with coronary artery disease impair interferon-γ signalling response. Nature. 470: 264-8. PMID 21307941 DOI: 10.1038/Nature09753  0.523
2011 Wang X, Song X, Glass CK, Rosenfeld MG. The long arm of long noncoding RNAs: roles as sensors regulating gene transcriptional programs. Cold Spring Harbor Perspectives in Biology. 3: a003756. PMID 20573714 DOI: 10.1101/Cshperspect.A003756  0.636
2008 Wang X, Arai S, Song X, Reichart D, Du K, Pascual G, Tempst P, Rosenfeld MG, Glass CK, Kurokawa R. Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription. Nature. 454: 126-30. PMID 18509338 DOI: 10.1038/Nature06992  0.664
2007 Song X, Gjoneska E, Ren Q, Taverna SD, Allis CD, Gorovsky MA. Phosphorylation of the SQ H2A.X motif is required for proper meiosis and mitosis in Tetrahymena thermophila. Molecular and Cellular Biology. 27: 2648-60. PMID 17242195 DOI: 10.1128/Mcb.01910-06  0.692
2007 Song X, Gorovsky MA. Unphosphorylated H1 is enriched in a specific region of the promoter when CDC2 is down-regulated during starvation Molecular and Cellular Biology. 27: 1925-1933. PMID 17194754 DOI: 10.1128/Mcb.01619-06  0.606
2005 Dou Y, Song X, Liu Y, Gorovsky MA. The H1 phosphorylation state regulates expression of CDC2 and other genes in response to starvation in Tetrahymena thermophila Molecular and Cellular Biology. 25: 3914-3922. PMID 15870266 DOI: 10.1128/Mcb.25.10.3914-3922.2005  0.691
2005 Liu Y, Song X, Gorovsky MA, Karrer KM. Elimination of foreign DNA during somatic differentiation in Tetrahymena thermophila shows position effect and is dosage dependent Eukaryotic Cell. 4: 421-431. PMID 15701804 DOI: 10.1128/Ec.4.2.421-431.2005  0.638
2002 Shang Y, Song X, Bowen J, Corstanje R, Gao Y, Gaertig J, Gorovsky MA. A robust inducible-repressible promoter greatly facilitates gene knockouts, conditional expression, and overexpression of homologous and heterologous genes in Tetrahymena thermophila Proceedings of the National Academy of Sciences of the United States of America. 99: 3734-3739. PMID 11891286 DOI: 10.1073/Pnas.052016199  0.668
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