Melik C. Demirel, Ph.D. - Publications

Carnegie Mellon University, Pittsburgh, PA 
Structure-property relationships, computer simulation, grain boundaries

78 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Pena-Francesch A, Demirel MC. Squid-Inspired Tandem Repeat Proteins: Functional Fibers and Films. Frontiers in Chemistry. 7: 69. PMID 30847338 DOI: 10.3389/fchem.2019.00069  1
2018 Leberfinger AN, Hospodiuk M, Pena-Francesch A, Ayan B, Ozbolat V, Koduru SV, Ozbolat IT, Demirel MC, Ravnic DJ. Squid Ring Teeth-coated Mesh Improves Abdominal Wall Repair. Plastic and Reconstructive Surgery. Global Open. 6: e1881. PMID 30254828 DOI: 10.1097/GOX.0000000000001881  1
2018 Tomko JA, Pena-Francesch A, Jung H, Tyagi M, Allen BD, Demirel MC, Hopkins PE. Tunable thermal transport and reversible thermal conductivity switching in topologically networked bio-inspired materials. Nature Nanotechnology. PMID 30104620 DOI: 10.1038/s41565-018-0227-7  1
2017 Jung H, Szwejkowski CJ, Pena-Francesch A, Tomko JA, Allen B, Özdemir ŞK, Hopkins P, Demirel MC. Ultrafast laser-probing spectroscopy for studying molecular structure of protein aggregates. The Analyst. PMID 28277574 DOI: 10.1039/c6an02570f  1
2016 Gaddes D, Jung H, Pena-Francesch A, Dion G, Tadigadapa S, Dressick WJ, Demirel MC. SELF-HEALING TEXTILE: ENZYME ENCAPSULATED LAYER-BY-LAYER STRUCTURAL PROTEINS. Acs Applied Materials & Interfaces. PMID 27419265 DOI: 10.1021/acsami.6b05232  1
2016 Jung H, Pena-Francesch A, Saadat A, Sebastian A, Kim DH, Hamilton RF, Albert I, Allen BD, Demirel MC. Molecular tandem repeat strategy for elucidating mechanical properties of high-strength proteins. Proceedings of the National Academy of Sciences of the United States of America. PMID 27222581 DOI: 10.1073/pnas.1521645113  1
2015 Gaddes DE, Demirel MC, Reeves WB, Tadigadapa S. Remote calorimetric detection of urea via flow injection analysis. The Analyst. 140: 8033-40. PMID 26479269 DOI: 10.1039/c5an01306b  1
2015 Sariola V, Pena-Francesch A, Jung H, Çetinkaya M, Pacheco C, Sitti M, Demirel MC. Segmented molecular design of self-healing proteinaceous materials. Scientific Reports. 5: 13482. PMID 26323335 DOI: 10.1038/srep13482  1
2015 Sekeroglu K, Demirel MC. A Fluidic Device with Polymeric Textured Ratchets. Polymer. 58: 30-35. PMID 25641987 DOI: 10.1016/j.polymer.2014.12.031  1
2015 Demirel MC, Cetinkaya M, Pena-Francesch A, Jung H. Recent advances in nanoscale bioinspired materials. Macromolecular Bioscience. 15: 300-11. PMID 25476469 DOI: 10.1002/mabi.201400324  1
2015 Sariola V, Pena-Francesch A, Jung H, Çetinkaya M, Pacheco C, Sitti M, Demirel MC. Segmented molecular design of self-healing proteinaceous materials Scientific Reports. 5. DOI: 10.1038/srep13482  1
2015 Michaels SC, Moses KC, Bachmann RJ, Hamilton R, Pena-Francesch A, Lanba A, Demirel MC, Quinn RD. Biomimicry of the manduca sexta forewing using SRT protein complex for FWMAV development Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9222: 86-91. DOI: 10.1007/978-3-319-22979-9_8  1
2014 Spedden E, Wiens MR, Demirel MC, Staii C. Effects of surface asymmetry on neuronal growth. Plos One. 9: e106709. PMID 25184796 DOI: 10.1371/journal.pone.0106709  1
2014 Pena-Francesch A, Florez S, Jung H, Sebastian A, Albert I, Curtis W, Demirel MC. Materials fabrication from native and recombinant thermoplastic squid proteins Advanced Functional Materials. 24: 7401-7409. DOI: 10.1002/adfm.201401940  1
2014 Pena-Francesch A, Akgun B, Miserez A, Zhu W, Gao H, Demirel MC. Pressure sensitive adhesion of an elastomeric protein complex extracted from squid ring teeth Advanced Functional Materials. 24: 6227-6233. DOI: 10.1002/adfm.201401534  1
2013 Guerette PA, Hoon S, Seow Y, Raida M, Masic A, Wong FT, Ho VH, Kong KW, Demirel MC, Pena-Francesch A, Amini S, Tay GZ, Ding D, Miserez A. Accelerating the design of biomimetic materials by integrating RNA-seq with proteomics and materials science. Nature Biotechnology. 31: 908-15. PMID 24013196 DOI: 10.1038/nbt.2671  1
2013 Hancock MJ, Demirel MC. Anisotropic wetting on structured surfaces Mrs Bulletin. 38: 391-396. DOI: 10.1557/mrs.2013.102  1
2012 Hancock MJ, Sekeroglu K, Demirel MC. Bioinspired Directional Surfaces for Adhesion, Wetting and Transport. Advanced Functional Materials. 22: 2223-2234. PMID 23526120 DOI: 10.1002/adfm.201103017  1
2012 Gurkan UA, Tasoglu S, Kavaz D, Demirel MC, Demirci U. Emerging technologies for assembly of microscale hydrogels. Advanced Healthcare Materials. 1: 149-58. PMID 23184717 DOI: 10.1002/adhm.201200011  1
2012 Beighley R, Spedden E, Sekeroglu K, Atherton T, Demirel MC, Staii C. Neuronal alignment on asymmetric textured surfaces. Applied Physics Letters. 101: 143701. PMID 23112350 DOI: 10.1063/1.4755837  1
2012 Santiago-Cordoba MA, Cetinkaya M, Boriskina SV, Vollmer F, Demirel MC. Ultrasensitive detection of a protein by optical trapping in a photonic-plasmonic microcavity. Journal of Biophotonics. 5: 629-38. PMID 22707455 DOI: 10.1002/jbio.201200040  1
2011 Santiago-Cordoba MA, Romano PR, MacKay A, Demirel MC. Raman based hepatocellular carcinoma biomarker detection. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2011: 3672-5. PMID 22255136 DOI: 10.1109/IEMBS.2011.6090620  1
2011 Christophis C, Sekeroglu K, Demirel G, Thome I, Grunze M, Demirel MC, Rosenhahn A. Fibroblast adhesion on unidirectional polymeric nanofilms. Biointerphases. 6: 158-63. PMID 22239808 DOI: 10.1116/1.3646093  1
2011 Sekeroglu K, Gurkan UA, Demirci U, Demirel MC. Transport of a soft cargo on a nanoscale ratchet. Applied Physics Letters. 99: 63703-637033. PMID 21901051 DOI: 10.1063/1.3625430  1
2011 Tekin H, Ozaydin-Ince G, Tsinman T, Gleason KK, Langer R, Khademhosseini A, Demirel MC. Responsive microgrooves for the formation of harvestable tissue constructs. Langmuir : the Acs Journal of Surfaces and Colloids. 27: 5671-9. PMID 21449596 DOI: 10.1021/la200183x  1
2011 Santiago-Cordoba MA, Boriskina SV, Vollmer F, Demirel MC. Nanoparticle-based protein detection by optical shift of a resonant microcavity Applied Physics Letters. 99. DOI: 10.1063/1.3599706  1
2011 Ozaydin-Ince G, Gleason KK, Demirel MC. A stimuli-responsive coaxial nanofilm for burst release Soft Matter. 7: 638-643. DOI: 10.1039/c0sm00922a  1
2011 Malvadkar NA, Sekeroglu K, Dressick WJ, Demirel MC. Catalytic activity of cobalt on nanotextured polymer films for hydrogen production Journal of Power Sources. 196: 8553-8560. DOI: 10.1016/j.jpowsour.2011.05.071  1
2010 Malvadkar NA, Hancock MJ, Sekeroglu K, Dressick WJ, Demirel MC. An engineered anisotropic nanofilm with unidirectional wetting properties. Nature Materials. 9: 1023-8. PMID 20935657 DOI: 10.1038/nmat2864  1
2010 Wang H, Malvadkar N, Koytek S, Bylander J, Reeves WB, Demirel MC. Quantitative analysis of creatinine in urine by metalized nanostructured parylene. Journal of Biomedical Optics. 15: 027004. PMID 20459278 DOI: 10.1117/1.3369002  1
2010 Malvadkar NA, Sekeroglu K, Dressick WJ, Demirel MC. Noncovalent mechanism for the conformal metallization of nanostructured parylene films. Langmuir : the Acs Journal of Surfaces and Colloids. 26: 4382-91. PMID 20095592 DOI: 10.1021/la9034529  1
2010 Demirel G, Malvadkar N, Demirel MC. Control of protein adsorption onto core-shell tubular and vesicular structures of diphenylalanine/parylene. Langmuir : the Acs Journal of Surfaces and Colloids. 26: 1460-3. PMID 20000323 DOI: 10.1021/la903571y  1
2010 So E, Demirel MC, Wahl KJ. Mechanical anisotropy of nanostructured parylene films during sliding contact Journal of Physics D: Applied Physics. 43. DOI: 10.1088/0022-3727/43/4/045403  1
2010 Ozaydin Ince G, Demirel G, Gleason KK, Demirel MC. Highly swellable free-standing hydrogel nanotube forests Soft Matter. 6: 1635-1639. DOI: 10.1039/c000569j  1
2010 Malvadkar NA, Demirel G, Poss M, Javed A, Dressick WJ, Demirel MC. Fabrication and use of electroless plated polymer surface-enhanced raman spectroscopy substrates for viral gene detection Journal of Physical Chemistry C. 114: 10730-10738. DOI: 10.1021/jp101542j  1
2010 Demirel G, Malvadkar N, Demirel MC. Template-based and template-free preparation of nanostructured parylene via oblique angle polymerization Thin Solid Films. 518: 4252-4255. DOI: 10.1016/j.tsf.2009.12.096  1
2009 Demirel MC, Kao P, Malvadkar N, Wang H, Gong X, Poss M, Allara DL. Bio-organism sensing via surface enhanced Raman spectroscopy on controlled metal/polymer nanostructured substrates. Biointerphases. 4: 35-41. PMID 20408721 DOI: 10.1116/1.3147962  1
2009 Malvadkar N, Dressick WJ, Demirel MC. Liquid phase deposition of titania onto nanostructured poly-p-xylylene thin films Journal of Materials Chemistry. 19: 4796-4804. DOI: 10.1039/b902882j  1
2009 Martín-Palma RJ, Demirel MC, Wang H, Pantano CG. Surface biofunctionalization of nanostructured GeSbSe chalcogenide glass thin films Journal of Non-Crystalline Solids. 355: 208-212. DOI: 10.1016/j.jnoncrysol.2008.10.013  1
2009 Malvadkar NA, Ulizio MA, Lowman J, Demirel MC. Functional nanostructured polymer-metal interfaces Virtual Testing and Predictive Modeling: For Fatigue and Fracture Mechanics Allowables. 357-369. DOI: 10.1007/978-0-387-95924-5_12  1
2009 Cetinkaya M, Demirel MC. Bridging experiments and simulations in oblique angle polymerization Chemical Vapor Deposition. 15: 101-105. DOI: 10.1002/cvde.200806747  1
2009 Malvadkar N, Mangan A, Boduroglu S, Wang H, Demirel MC. Breaking out of the mould European Coatings Journal. 40-43.  1
2008 Gullapalli RR, Demirel MC, Butler PJ. Molecular dynamics simulations of DiI-C18(3) in a DPPC lipid bilayer. Physical Chemistry Chemical Physics : Pccp. 10: 3548-60. PMID 18548161 DOI: 10.1039/b716979e  1
2008 Malvadkar N, Park S, Urquidi-MacDonald M, Wang H, Demirel MC. Catalytic activity of cobalt deposited on nanostructured poly(p-xylylene) films Journal of Power Sources. 182: 323-328. DOI: 10.1016/j.jpowsour.2008.03.060  1
2008 Demirel MC. Emergent properties of spatially organized poly(p-xylylene) films fabricated by vapor deposition Colloids and Surfaces a: Physicochemical and Engineering Aspects. 321: 121-124. DOI: 10.1016/j.colsurfa.2008.02.028  1
2008 Cetinkaya M, Malvadkar N, Demirel MC. Power-law scaling of structured poly(p-xylylene) films deposited by oblique angle Journal of Polymer Science, Part B: Polymer Physics. 46: 640-648. DOI: 10.1002/polb.21399  1
2008 Kao P, Malvadkar NA, Cetinkaya M, Wang H, Allara DL, Demirel MC. Surface-enhanced raman detection on metalized nanostructured poly(p-xylylene) films Advanced Materials. 20: 3562-3565. DOI: 10.1002/adma.200800936  1
2008 Malvadkar N, Kao P, Wang H, Allara DL, Demirel MC. A SERS substrate for detection of E.Coli on nanostructured poly(p-xylylene) Technical Proceedings of the 2008 Nsti Nanotechnology Conference and Trade Show, Nsti-Nanotech, Nanotechnology 2008. 2: 555-557.  1
2008 Cetinkaya M, Demirel MC. Crystalline phase transitions of nanostructured poly-(p-xylylene) films American Chemical Society, Polymer Preprints, Division of Polymer Chemistry. 49: 456.  1
2008 Demirel MC. Spatially organized parylene nanowires fabricated by oblique angle vapor deposition American Chemical Society, Polymer Preprints, Division of Polymer Chemistry. 49: 949-950.  1
2007 Boduroglu S, Cetinkaya M, Dressick WJ, Singh A, Demirel MC. Controlling the wettability and adhesion of nanostructured poly-(p-xylylene) films. Langmuir : the Acs Journal of Surfaces and Colloids. 23: 11391-5. PMID 17929851 DOI: 10.1021/la7025413  1
2007 Demirel MC, Boduroglu S, Cetinkaya M, Lakhtakia A. Spatially organized free-standing poly(p-xylylene) nanowires fabricated by vapor deposition. Langmuir : the Acs Journal of Surfaces and Colloids. 23: 5861-3. PMID 17465585 DOI: 10.1021/la700538f  1
2007 Demirel MC, So E, Ritty TM, Naidu SH, Lakhtakia A. Fibroblast cell attachment and growth on nanoengineered sculptured thin films. Journal of Biomedical Materials Research. Part B, Applied Biomaterials. 81: 219-23. PMID 16924604 DOI: 10.1002/jbm.b.30656  1
2007 Demirel MC, Singh A. Novel nanostructured hydroxyl-paracyclophane thin films Ecs Transactions. 3: 17-20. DOI: 10.1149/1.2721505  1
2007 Samuel BA, Demirel MC, Haque A. High resolution deformation and damage detection using fluorescent dyes Journal of Micromechanics and Microengineering. 17: 2324-2327. DOI: 10.1088/0960-1317/17/11/020  1
2007 Cetinkaya M, Boduroglu S, Demirel MC. Growth of nanostructured thin films of poly(p-xylylene) derivatives by vapor deposition Polymer. 48: 4130-4134. DOI: 10.1016/j.polymer.2007.05.015  1
2007 Lakhtakia A, Demirel MC, Horn MW, Xu J. Six emerging directions in sulptured-thin-film research Advances in Solid State Physics. 46: 295-307. DOI: 10.1007/978-3-540-38235-5_22  1
2007 Demirel MC, Cetinkaya M, Singh A, Dressick WJ. Noncovalent deposition of nanoporous Ni membranes on spatially organized poly(p-xylylene) film templates Advanced Materials. 19: 4495-4499. DOI: 10.1002/adma.200701063  1
2007 Demirel MC. ECS Transactions - Biological Nanostructures, Materials, and Applications: Preface Ecs Transactions. 3: iii.  1
2007 Gullapalli R, Demirel M, Butler PJ. Molecular dynamics simulations of dialkyl carbocyanine dyes in a DPPC bilayer: Atomistic insights into single molecule fluorescence Proceedings of the Asme Summer Bioengineering Conference 2007, Sbc 2007. 787-788.  1
2006 Cetinkaya M, Zeytun A, Sofo J, Demirel MC. How do insertions affect green fluorescent protein? Chemical Physics Letters. 419: 48-54. DOI: 10.1016/j.cplett.2005.11.046  1
2005 Demirel MC, Cherny D. Clustering and diversity of fluctuations for proteins. Nanomedicine : Nanotechnology, Biology, and Medicine. 1: 41-6. PMID 17292056 DOI: 10.1016/j.nano.2004.11.007  1
2005 Demirel MC, Lesk AM. Molecular forces in antibody maturation. Physical Review Letters. 95: 208106. PMID 16384106 DOI: 10.1103/PhysRevLett.95.208106  1
2005 Demirel MC, Keskin O. Protein interactions and fluctuations in a proteomic network using an elastic network model. Journal of Biomolecular Structure & Dynamics. 22: 381-6. PMID 15588102 DOI: 10.1080/07391102.2005.10507010  1
2005 Pursel S, Horn MW, Demirel MC, Lakhtakia A. Growth of sculptured polymer submicronwire assemblies by vapor deposition Polymer. 46: 9544-9548. DOI: 10.1016/j.polymer.2005.07.092  1
2005 Cetinkaya M, Salway L, Keskin O, Demirel M. Conformational changes and small world association in proteins Proceedings - Electrochemical Society. 539-545.  1
2004 Cetinkaya M, Sofo J, Demirel MC. Protein simulations in confined environments Proceedings of Spie - the International Society For Optical Engineering. 5509: 133-137. DOI: 10.1117/12.558733  1
2003 Demirel MC, Kuprat AP, George DC, Rollett AD. Bridging simulations and experiments in microstructure evolution. Physical Review Letters. 90: 016106. PMID 12570632  1
2003 Kuprat A, George D, Straub G, Demirel MC. Modeling microstructure evolution in three dimensions with Grain3D and LaGriT Computational Materials Science. 28: 199-208. DOI: 10.1016/S0927-0256(03)00107-1  1
2002 Demirel MC, Kuprat AP, George DC, Straub GK, Rollett AD. Linking experimental characterization and computational modeling of grain growth in Al-foil Interface Science. 10: 137-141. DOI: 10.1023/A:1015867912262  1
2002 Demirel MC, Kuprat AP, George DC, Straub GK, Misra A, Alexander K, Rollett AD. Large scale statistics for computational verification of grain growth simulations with experiments Materials Research Society Symposium - Proceedings. 731: 195-202.  1
2001 Atilgan AR, Durell SR, Jernigan RL, Demirel MC, Keskin O, Bahar I. Anisotropy of fluctuation dynamics of proteins with an elastic network model. Biophysical Journal. 80: 505-15. PMID 11159421 DOI: 10.1016/S0006-3495(01)76033-X  1
2001 Demirel MC, Kuprat AP, George DC, El-Dasher BS, Carlson NN, Straub GK, Rollett AD. Comparison of experimental and computational aspects of grain growth in Al-foil Materials Research Society Symposium - Proceedings. 652: Y181-Y185.  1
1999 Jernigan RL, Demirel MC, Bahar I. Relating Structure to Function Through the Dominant Slow Modes of Motion of DNA Topoisomerase II International Journal of Quantum Chemistry. 75: 301-312.  1
1998 Demirel MC, Atilgan AR, Jernigan RL, Erman B, Bahar I. Identification of kinetically hot residues in proteins. Protein Science : a Publication of the Protein Society. 7: 2522-32. PMID 9865946 DOI: 10.1002/pro.5560071205  1
1998 Bahar I, Atilgan AR, Demirel MC, Erman B. Vibrational dynamics of folded proteins: Significance of slow and fast motions in relation to function and stability Physical Review Letters. 80: 2733-2736.  1
1997 Sayar M, Demirel MC, Atilgan AR. Dynamics of disordered structures: Effect of non-linearity on the localization Journal of Sound and Vibration. 205: 372-379.  1
1997 Demirel MC, Sayar M, Atilgan AR. Statistical mechanics of Fermi-Pasta-Ulam chains with the canonical ensemble Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 55: 3727-3730.  1
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