Jarrett D. Egertson, Ph.D. - Publications

Affiliations: 
Genome Sciences University of Washington, Seattle, Seattle, WA 

19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Amodei D, Egertson J, MacLean BX, Johnson R, Merrihew GE, Keller A, Marsh D, Vitek O, Mallick P, MacCoss MJ. Improving Precursor Selectivity in Data-Independent Acquisition Using Overlapping Windows. Journal of the American Society For Mass Spectrometry. PMID 30671891 DOI: 10.1007/S13361-018-2122-8  0.52
2018 Searle BC, Pino LK, Egertson JD, Ting YS, Lawrence RT, MacLean BX, Villén J, MacCoss MJ. Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry. Nature Communications. 9: 5128. PMID 30510204 DOI: 10.1038/S41467-018-07454-W  0.52
2018 Kim YJ, Sweet SM, Egertson JD, Sedgewick AJ, Woo S, Liao WL, Merrihew GE, Searle BC, Vaske C, Heaton R, MacCoss MJ, Hembrough T. Data-independent acquisition mass spectrometry to quantify protein levels in FFPE tumor biopsies for molecular diagnostics. Journal of Proteome Research. PMID 30481034 DOI: 10.1021/Acs.Jproteome.8B00699  0.52
2018 MacLean BX, Pratt BS, Egertson JD, MacCoss MJ, Smith RD, Baker ES. Using Skyline to Analyze Data-Containing Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry Dimensions. Journal of the American Society For Mass Spectrometry. PMID 30047074 DOI: 10.1007/S13361-018-2028-5  0.52
2018 Litichevskiy L, Peckner R, Abelin JG, Asiedu JK, Creech AL, Davis JF, Davison D, Dunning CM, Egertson JD, Egri S, Gould J, Ko T, Johnson SA, Lahr DL, Lam D, et al. A Library of Phosphoproteomic and Chromatin Signatures for Characterizing Cellular Responses to Drug Perturbations. Cell Systems. PMID 29655704 DOI: 10.1016/J.Cels.2018.03.012  0.52
2018 Peckner R, Myers SA, Jacome ASV, Egertson JD, Abelin JG, MacCoss MJ, Carr SA, Jaffe JD. Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics. Nature Methods. PMID 29608554 DOI: 10.1038/Nmeth.4643  0.52
2018 Galitzine C, Egertson J, Abbatiello SE, Henderson CM, Pino L, MacCoss MJ, Hoofnagle AN, Vitek O. Nonlinear regression improves accuracy of characterization of multiplexed mass spectrometric assays. Molecular & Cellular Proteomics : McP. PMID 29438992 DOI: 10.1074/Mcp.Ra117.000322  0.52
2017 Ting YS, Egertson JD, Bollinger JG, Searle BC, Payne SH, Noble WS, MacCoss MJ. PECAN: library-free peptide detection for data-independent acquisition tandem mass spectrometry data. Nature Methods. PMID 28783153 DOI: 10.1038/Nmeth.4390  0.52
2016 Bollinger JG, Stergachis AB, Johnson RS, Egertson JD, MacCoss MJ. Selecting Optimal Peptides for Targeted Proteomic Experiments in Human Plasma Using In Vitro Synthesized Proteins as Analytical Standards. Methods in Molecular Biology (Clifton, N.J.). 1410: 207-21. PMID 26867746 DOI: 10.1007/978-1-4939-3524-6_12  0.52
2015 Ting YS, Egertson JD, Payne SH, Kim S, MacLean B, Käll L, Aebersold RH, Smith RD, Noble WS, MacCoss MJ. Peptide-Centric Proteome Analysis: An Alternative Strategy for the Analysis of Tandem Mass Spectrometry Data. Molecular & Cellular Proteomics : McP. PMID 26217018 DOI: 10.1074/Mcp.O114.047035  0.52
2015 Eng JK, Hoopmann MR, Jahan TA, Egertson JD, Noble WS, MacCoss MJ. A Deeper Look into Comet-Implementation and Features. Journal of the American Society For Mass Spectrometry. PMID 26115965 DOI: 10.1007/S13361-015-1179-X  0.52
2015 Searle BC, Egertson JD, Bollinger JG, Stergachis AB, MacCoss MJ. Using Data Independent Acquisition (DIA) to Model High-responding Peptides for Targeted Proteomics Experiments. Molecular & Cellular Proteomics : McP. 14: 2331-40. PMID 26100116 DOI: 10.1074/Mcp.M115.051300  0.52
2015 Egertson JD, MacLean B, Johnson R, Xuan Y, MacCoss MJ. Multiplexed peptide analysis using data-independent acquisition and Skyline. Nature Protocols. 10: 887-903. PMID 25996789 DOI: 10.1038/Nprot.2015.055  0.52
2013 Egertson JD, Kuehn A, Merrihew GE, Bateman NW, MacLean BX, Ting YS, Canterbury JD, Marsh DM, Kellmann M, Zabrouskov V, Wu CC, MacCoss MJ. Multiplexed MS/MS for improved data-independent acquisition Nature Methods. 10: 744-746. PMID 23793237 DOI: 10.1038/Nmeth.2528  0.52
2012 O'Roak BJ, Vives L, Fu W, Egertson JD, Stanaway IB, Phelps IG, Carvill G, Kumar A, Lee C, Ankenman K, Munson J, Hiatt JB, Turner EH, Levy R, O'Day DR, et al. Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disorders. Science (New York, N.Y.). 338: 1619-22. PMID 23160955 DOI: 10.1126/Science.1227764  0.52
2012 Chambers MC, Maclean B, Burke R, Amodei D, Ruderman DL, Neumann S, Gatto L, Fischer B, Pratt B, Egertson J, Hoff K, Kessner D, Tasman N, Shulman N, Frewen B, et al. A cross-platform toolkit for mass spectrometry and proteomics. Nature Biotechnology. 30: 918-20. PMID 23051804 DOI: 10.1038/Nbt.2377  0.52
2012 Egertson JD, Eng JK, Bereman MS, Hsieh EJ, Merrihew GE, MacCoss MJ. De novo correction of mass measurement error in low resolution tandem MS spectra for shotgun proteomics Journal of the American Society For Mass Spectrometry. 23: 2075-2082. PMID 23007965 DOI: 10.1007/S13361-012-0482-Z  0.52
2012 Bereman MS, Canterbury JD, Egertson JD, Horner J, Remes PM, Schwartz J, Zabrouskov V, MacCoss MJ. Evaluation of front-end higher energy collision-induced dissociation on a benchtop dual-pressure linear ion trap mass spectrometer for shotgun proteomics Analytical Chemistry. 84: 1533-1539. PMID 22192247 DOI: 10.1021/Ac203210A  0.52
2011 Bereman MS, Egertson JD, Maccoss MJ. Comparison between procedures using SDS for shotgun proteomic analyses of complex samples Proteomics. 11: 2931-2935. PMID 21656683 DOI: 10.1002/Pmic.201100045  0.52
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