Zengyi Shao, Ph.D. - Publications

University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
Directed evolution, metabolic engineering, natural product, gene therapy, synthetic biology

49 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Zhao Y, Yao Z, Ploessl D, Ghosh S, Monti M, Schindler D, Gao M, Cai PY, Qiao M, Yang C, Cao M, Shao Z. Leveraging the Hermes transposon to accelerate the development of nonconventional yeast-based microbial cell factories. Acs Synthetic Biology. PMID 32396718 DOI: 10.1021/acssynbio.0c00123  0.4
2020 Lopez C, Zhao Y, Masonbrink R, Shao Z. Modulating Pathway Performance by Perturbing Local Genetic Context. Acs Synthetic Biology. PMID 32207925 DOI: 10.1021/acssynbio.9b00445  0.4
2020 Cao M, Fatma Z, Song X, Hsieh PH, Tran VG, Lyon WL, Sayadi M, Shao Z, Yoshikuni Y, Zhao H. A genetic toolbox for metabolic engineering of Issatchenkia orientalis. Metabolic Engineering. PMID 32007615 DOI: 10.1016/j.ymben.2020.01.005  1
2019 Cao M, Gao M, Suastegui M, Mei Y, Shao Z. Building microbial factories for the production of aromatic amino acid pathway derivatives: From commodity chemicals to plant-sourced natural products. Metabolic Engineering. PMID 31408706 DOI: 10.1016/j.ymben.2019.08.008  0.36
2018 Cao M, Gao M, Ploessl D, Song C, Shao Z. CRISPR-mediated Genome Editing and Gene Repression in Scheffersomyces stipitis. Biotechnology Journal. e1700598. PMID 29917323 DOI: 10.1002/biot.201700598  0.36
2017 Sun J, Zhao L, Shao Z, Shanks J, Peebles CAM. EXPRESSION OF TABERSONINE 16-HYDROXYLASE AND 16-HYDROXYTABERSONINE-O-METHYLTRANSFERASE IN CATHARANTHUS ROSEUS HAIRY ROOTS. Biotechnology and Bioengineering. PMID 29105731 DOI: 10.1002/bit.26487  0.36
2017 Cao M, Seetharam AS, Severin AJ, Shao Z. Rapid Isolation of Centromeres from Scheffersomyces stipitis. Acs Synthetic Biology. PMID 28837318 DOI: 10.1021/acssynbio.7b00166  0.36
2017 Suástegui M, Yu Ng C, Chowdhury A, Sun W, Cao M, House E, Maranas CD, Shao Z. Multilevel Engineering of the Upstream Module of Aromatic Amino Acid Biosynthesis in Saccharomyces cerevisiae for High Production of Polymer and Drug Precursors. Metabolic Engineering. PMID 28625755 DOI: 10.1016/j.ymben.2017.06.008  0.36
2017 Cao M, Gao M, Lopez-Garcia CL, Wu Y, Seetharam AS, Severin AJ, Shao Z. Centromeric DNA facilitates nonconventional yeast genetic engineering. Acs Synthetic Biology. PMID 28391682 DOI: 10.1021/acssynbio.7b00046  0.36
2016 Gao M, Cao M, Suastegui M, Walker JA, Rodriguez-Quiroz N, Wu Y, Tribby D, Okerlund A, Stanley LM, Shanks JV, Shao Z. Innovating a nonconventional yeast platform for producing shikimate as the building block of high-value aromatics. Acs Synthetic Biology. PMID 27600996 DOI: 10.1021/acssynbio.6b00132  0.36
2016 Suástegui M, Shao Z. Yeast factories for the production of aromatic compounds: from building blocks to plant secondary metabolites. Journal of Industrial Microbiology & Biotechnology. PMID 27581441 DOI: 10.1007/s10295-016-1824-9  1
2016 Zhao Y, Cao M, McClelland JF, Shao Z, Lu M. A photoacoustic immunoassay for biomarker detection. Biosensors & Bioelectronics. 85: 261-266. PMID 27183276 DOI: 10.1016/j.bios.2016.05.028  0.4
2016 Suastegui M, Matthiesen JE, Carraher JM, Hernandez N, Rodriguez Quiroz N, Okerlund A, Cochran EW, Shao Z, Tessonnier JP. Combining Metabolic Engineering and Electrocatalysis: Application to the Production of Polyamides from Sugar. Angewandte Chemie (International Ed. in English). 55: 2368-2373. PMID 26840213 DOI: 10.1002/anie.201509653  1
2016 Zhang F, Luo Y, Shao Z, Xu L, Liu X, Niu Y, Shi J, Sun X, Liu Y, Ding Y, Zhao L. MicroRNA-187, a downstream effector of TGFβ pathway, suppresses Smad-mediated epithelial-mesenchymal transition in colorectal cancer. Cancer Letters. PMID 26820227 DOI: 10.1016/j.canlet.2016.01.037  0.6
2016 Zhang Y, Wang F, Gao K, Liu Y, Shao Z. Alcogel and aerogel of nitrocellulose formed in nitrocellulose/acetone/ethanol ternary system International Journal of Polymeric Materials and Polymeric Biomaterials. 65: 377-383. DOI: 10.1080/00914037.2015.1129949  0.36
2016 Gao H, Wang F, Shao Z. Study on the rheological model of Xuan paper Wood Science and Technology. 50: 427-440. DOI: 10.1007/s00226-015-0781-1  0.36
2016 Zhang C, Shao Z, Chen X, Gu X, Feng L, Biegler LT. Optimal flowsheet configuration of a polymerization process with embedded molecular weight distributions Aiche Journal. 62: 131-145. DOI: 10.1002/aic.15040  0.4
2015 Liu Y, Lai Q, Du J, Shao Z. Bacillus zhangzhouensis sp. nov. and Bacillus australimaris sp. nov. International Journal of Systematic and Evolutionary Microbiology. PMID 26705002 DOI: 10.1099/ijsem.0.000856  0.36
2015 Qin F, Luo Y, Hu C, Shao Z, Ruan R, Li L. [Influence of sedentary behavior on weight retention among postpartum women within one year after childbirth]. Zhonghua Liu Xing Bing Xue Za Zhi = Zhonghua Liuxingbingxue Zazhi. 36: 743-6. PMID 26564706  0.6
2015 Shao Z, Nazari M, Guo L, Li SH, Sun J, Liu SM, Yuan HP, Weisel RD, Li RK. The cardiac repair benefits of inflammation do not persist: evidence from mast cell implantation. Journal of Cellular and Molecular Medicine. PMID 26471858 DOI: 10.1111/jcmm.12703  0.36
2015 Shao Z, Yang B, Zhang W, Zhao Y, Wu Z, Miao M. Secure medical information sharing in cloud computing. Technology and Health Care : Official Journal of the European Society For Engineering and Medicine. 23: S133-S137. PMID 26410315 DOI: 10.3233/thc-150945  0.4
2015 Lu H, Gao F, Shu G, Xia G, Shao Z, Lu H, Cheng K. Wogonin inhibits the proliferation of myelodysplastic syndrome cells through the induction of cell cycle arrest and apoptosis. Molecular Medicine Reports. PMID 26398525 DOI: 10.3892/mmr.2015.4353  0.44
2015 Yan Y, Xin A, Liu Q, Huang H, Shao Z, Zang Y, Chen L, Sun Y, Gao H. Induction of ROS generation and NF-κB activation in MARC-145 cells by a novel porcine reproductive and respiratory syndrome virus in Southwest of China isolate. Bmc Veterinary Research. 11: 232. PMID 26358082 DOI: 10.1186/s12917-015-0480-z  0.36
2015 Du J, Liu Y, Lai Q, Dong C, Xie Y, Shao Z. Kordia zhangzhouensis sp. nov., isolated from the surface freshwater of the Jiulong River in China. International Journal of Systematic and Evolutionary Microbiology. PMID 26297493 DOI: 10.1099/ijsem.0.000424  0.36
2015 Liu Y, Kumar NR, Lai Q, Du J, Dobritsa AP, Samadpour M, Shao Z. Identification of strains Bacillus aerophilus MTCC 7304T as Bacillus altitudinis and Bacillus stratosphericus MTCC 7305T as a Proteus sp. and the status of the species Bacillus aerius Shivaji et al. 2006. Request for an Opinion. International Journal of Systematic and Evolutionary Microbiology. PMID 26297145 DOI: 10.1099/ijsem.0.000408  0.36
2015 Liu Y, Lai Q, Du J, Shao Z. Reclassification of Bacillus invictae as a later heterotypic synonym of Bacillus altitudinis. International Journal of Systematic and Evolutionary Microbiology. PMID 25977285 DOI: 10.1099/ijs.0.000336  0.36
2015 Shao Z, Zhao Y, Feng L, Feng G, Zhang J, Zhang J. Association between plasma fibrinogen levels and mortality in acute-on-chronic hepatitis B liver failure. Disease Markers. 2015: 468596. PMID 25960593 DOI: 10.1155/2015/468596  0.4
2015 Wu Y, Shao Z. Measurement and mechanical analysis of the strains–stresses induced by tree-pulling experiments in tree stems Trees - Structure and Function. DOI: 10.1007/s00468-015-1310-4  0.36
2014 Xiao H, Shao Z, Jiang Y, Dole S, Zhao H. Exploiting Issatchenkia orientalis SD108 for succinic acid production. Microbial Cell Factories. 13: 121. PMID 25159171 DOI: 10.1186/s12934-014-0121-4  1
2014 Shao Z, Zhao H. Manipulating natural product biosynthetic pathways via DNA assembler. Current Protocols in Chemical Biology. 6: 65-100. PMID 24903884 DOI: 10.1002/9780470559277.ch130191  1
2014 Feng L, Zhao Y, Zhao H, Shao Z. Effects of storage time and temperature on coagulation tests and factors in fresh plasma. Scientific Reports. 4: 3868. PMID 24463857 DOI: 10.1038/srep03868  1
2013 Luo Y, Huang H, Liang J, Wang M, Lu L, Shao Z, Cobb RE, Zhao H. Activation and characterization of a cryptic polycyclic tetramate macrolactam biosynthetic gene cluster. Nature Communications. 4: 2894. PMID 24305602 DOI: 10.1038/ncomms3894  1
2013 Shao Z, Zhao H. Construction and engineering of large biochemical pathways via DNA assembler. Methods in Molecular Biology (Clifton, N.J.). 1073: 85-106. PMID 23996442 DOI: 10.1007/978-1-62703-625-2_9  1
2013 Shao Z, Rao G, Li C, Abil Z, Luo Y, Zhao H. Refactoring the silent spectinabilin gene cluster using a plug-and-play scaffold. Acs Synthetic Biology. 2: 662-9. PMID 23968564 DOI: 10.1021/sb400058n  1
2012 Shao Z, Zhao H. DNA assembler: a synthetic biology tool for characterizing and engineering natural product gene clusters. Methods in Enzymology. 517: 203-24. PMID 23084940 DOI: 10.1016/B978-0-12-404634-4.00010-3  1
2012 Shao Z, Luo Y, Zhao H. DNA assembler method for construction of zeaxanthin-producing strains of Saccharomyces cerevisiae. Methods in Molecular Biology (Clifton, N.J.). 898: 251-62. PMID 22711131 DOI: 10.1007/978-1-61779-918-1_17  1
2012 Sun J, Shao Z, Zhao H, Nair N, Wen F, Xu JH, Zhao H. Cloning and characterization of a panel of constitutive promoters for applications in pathway engineering in Saccharomyces cerevisiae. Biotechnology and Bioengineering. 109: 2082-92. PMID 22383307 DOI: 10.1002/bit.24481  1
2011 Du J, Shao Z, Zhao H. Engineering microbial factories for synthesis of value-added products. Journal of Industrial Microbiology & Biotechnology. 38: 873-90. PMID 21526386 DOI: 10.1007/s10295-011-0970-3  1
2011 Shao Z, Luo Y, Zhao H. Rapid characterization and engineering of natural product biosynthetic pathways via DNA assembler. Molecular Biosystems. 7: 1056-9. PMID 21327279 DOI: 10.1039/c0mb00338g  1
2010 Choi YS, Johannes TW, Simurdiak M, Shao Z, Lu H, Zhao H. Cloning and heterologous expression of the spectinabilin biosynthetic gene cluster from Streptomyces spectabilis. Molecular Biosystems. 6: 336-8. PMID 20094652 DOI: 10.1039/b923177c  1
2009 Zha W, Rubin-Pitel SB, Shao Z, Zhao H. Improving cellular malonyl-CoA level in Escherichia coli via metabolic engineering. Metabolic Engineering. 11: 192-8. PMID 19558964 DOI: 10.1016/j.ymben.2009.01.005  1
2009 Shao Z, Zhao H, Zhao H. DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways. Nucleic Acids Research. 37: e16. PMID 19074487 DOI: 10.1093/nar/gkn991  1
2008 Shao Z, Blodgett JA, Circello BT, Eliot AC, Woodyer R, Li G, van der Donk WA, Metcalf WW, Zhao H. Biosynthesis of 2-hydroxyethylphosphonate, an unexpected intermediate common to multiple phosphonate biosynthetic pathways. The Journal of Biological Chemistry. 283: 23161-8. PMID 18544530 DOI: 10.1074/jbc.M801788200  1
2008 Nair NU, Shao Z, Zhao H, Sullivan RP, McLachlan M, Johannes TW. Biobutanol from yeast. A synergistic genome and protein engineering approach Aiche Annual Meeting, Conference Proceedings 1
2006 Woodyer RD, Shao Z, Thomas PM, Kelleher NL, Blodgett JA, Metcalf WW, van der Donk WA, Zhao H. Heterologous production of fosfomycin and identification of the minimal biosynthetic gene cluster. Chemistry & Biology. 13: 1171-82. PMID 17113999 DOI: 10.1016/j.chembiol.2006.09.007  1
2006 Xie D, Shao Z, Achkar J, Zha W, Frost JW, Zhao H. Microbial synthesis of triacetic acid lactone. Biotechnology and Bioengineering. 93: 727-36. PMID 16245348 DOI: 10.1002/bit.20759  1
2004 Zha W, Shao Z, Frost JW, Zhao H. Rational pathway engineering of type I fatty acid synthase allows the biosynthesis of triacetic acid lactone from D-glucose in vivo. Journal of the American Chemical Society. 126: 4534-5. PMID 15070368 DOI: 10.1021/ja0317271  1
1998 Zhao H, Giver L, Shao Z, Affholter JA, Arnold FH. Molecular evolution by staggered extension process (StEP) in vitro recombination. Nature Biotechnology. 16: 258-61. PMID 9528005 DOI: 10.1038/nbt0398-258  1
1998 Shao Z, Zhao H, Giver L, Arnold FH. Random-priming in vitro recombination: an effective tool for directed evolution. Nucleic Acids Research. 26: 681-3. PMID 9421535  1
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