Jingyi Li, Ph.D. - Publications

Affiliations: 
Biostatistics University of California, Berkeley, Berkeley, CA 
Area:
numerical weather prediction, astronomy, genomics

13 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Guo Y, Xue Z, Yuan R, Li JJ, Pastor WA, Liu W. RAD: a web application to identify region associated differentially expressed genes. Bioinformatics (Oxford, England). PMID 33532827 DOI: 10.1093/bioinformatics/btab075  0.306
2019 Li WV, Li S, Tong X, Deng L, Shi H, Li JJ. AIDE: annotation-assisted isoform discovery with high precision. Genome Research. PMID 31694868 DOI: 10.1101/gr.251108.119  0.316
2018 Burke JE, Longhurst AD, Merkurjev D, Sales-Lee J, Rao B, Moresco JJ, Yates JR, Li JJ, Madhani HD. Spliceosome Profiling Visualizes Operations of a Dynamic RNP at Nucleotide Resolution. Cell. 173: 1014-1030.e17. PMID 29727661 DOI: 10.1016/J.Cell.2018.03.020  0.306
2017 Li WV, Chen Y, Li JJ. TROM: A Testing-Based Method for Finding Transcriptomic Similarity of Biological Samples. Statistics in Biosciences. 9: 105-136. PMID 28781712 DOI: 10.1007/s12561-016-9163-y  0.324
2016 Yang Y, Yang YT, Yuan J, Lu ZJ, Li JJ. Large-scale mapping of mammalian transcriptomes identifies conserved genes associated with different cell states. Nucleic Acids Research. PMID 27980097 DOI: 10.1093/nar/gkw1256  0.312
2014 Boyle AP, Araya CL, Brdlik C, Cayting P, Cheng C, Cheng Y, Gardner K, Hillier LW, Janette J, Jiang L, Kasper D, Kawli T, Kheradpour P, Kundaje A, Li JJ, et al. Comparative analysis of regulatory information and circuits across distant species. Nature. 512: 453-6. PMID 25164757 DOI: 10.1038/Nature13668  0.57
2014 Gerstein MB, Rozowsky J, Yan KK, Wang D, Cheng C, Brown JB, Davis CA, Hillier L, Sisu C, Li JJ, Pei B, Harmanci AO, Duff MO, Djebali S, Alexander RP, et al. Comparative analysis of the transcriptome across distant species. Nature. 512: 445-8. PMID 25164755 DOI: 10.1038/Nature13424  0.634
2014 Li JJ, Huang H, Bickel PJ, Brenner SE. Comparison of D. melanogaster and C. elegans developmental stages, tissues, and cells by modENCODE RNA-seq data. Genome Research. 24: 1086-101. PMID 24985912 DOI: 10.1101/Gr.170100.113  0.525
2014 Li JJ, Bickel PJ, Biggin MD. System wide analyses have underestimated protein abundances and the importance of transcription in mammals. Peerj. 2: e270. PMID 24688849 DOI: 10.7717/Peerj.270  0.52
2014 Li JJ, Bickel PJ, Biggin MD. System wide analyses have underestimated protein abundances and the importance of transcription in mammals Peerj. 2013: 1-26. DOI: 10.7717/peerj.270  0.529
2012 Fisher WW, Li JJ, Hammonds AS, Brown JB, Pfeiffer BD, Weiszmann R, MacArthur S, Thomas S, Stamatoyannopoulos JA, Eisen MB, Bickel PJ, Biggin MD, Celniker SE. DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 109: 21330-5. PMID 23236164 DOI: 10.1073/Pnas.1209589110  0.622
2011 Li JJ, Jiang CR, Brown JB, Huang H, Bickel PJ. Sparse linear modeling of next-generation mRNA sequencing (RNA-Seq) data for isoform discovery and abundance estimation. Proceedings of the National Academy of Sciences of the United States of America. 108: 19867-72. PMID 22135461 DOI: 10.1073/Pnas.1113972108  0.583
2009 MacArthur S, Li XY, Li J, Brown JB, Chu HC, Zeng L, Grondona BP, Hechmer A, Simirenko L, Keränen SV, Knowles DW, Stapleton M, Bickel P, Biggin MD, Eisen MB. Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions. Genome Biology. 10: R80. PMID 19627575 DOI: 10.1186/Gb-2009-10-7-R80  0.62
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