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Jingyi Li, Ph.D. - Publications

Affiliations: 
Biostatistics University of California, Berkeley, Berkeley, CA 
Area:
numerical weather prediction, astronomy, genomics
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17 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Li JJ, Chew GL, Biggin MD. Quantitative principles of cis-translational control by general mRNA sequence features in eukaryotes. Genome Biology. 20: 162. PMID 31399036 DOI: 10.1186/s13059-019-1761-9  0.52
2018 Zhang D, Liu Y, Zhang Z, Lv P, Liu Y, Li J, Wu Y, Zhang R, Huang Y, Xu G, Qian Y, Qian Y, Chen S, Xu C, Shen J, et al. Basonuclin 1 Deficiency is a Cause of Primary Ovarian Insufficiency. Human Molecular Genetics. PMID 30010909 DOI: 10.1093/hmg/ddy261  0.4
2017 Li JJ, Chew GL, Biggin MD. Quantitating translational control: mRNA abundance-dependent and independent contributions and the mRNA sequences that specify them. Nucleic Acids Research. PMID 29040683 DOI: 10.1093/nar/gkx898  0.52
2016 Ye Y, Li JJ. NMFP: a non-negative matrix factorization based preselection method to increase accuracy of identifying mRNA isoforms from RNA-seq data. Bmc Genomics. 17: 11. PMID 26818007 DOI: 10.1186/s12864-015-2304-8  0.4
2016 Li WV, Razaee ZS, Li JJ. Epigenome overlap measure (EPOM) for comparing tissue/cell types based on chromatin states. Bmc Genomics. 17: 10. PMID 26817822 DOI: 10.1186/s12864-015-2303-9  0.4
2015 Li JJ, Biggin MD. Statistics requantitates the central dogma Science. 347: 1066-1067. PMID 25745146 DOI: 10.1126/science.aaa8332  0.4
2015 Zhang D, Li J, Xu G, Zhang R, Zhou C, Qian Y, Liu Y, Chen L, Zhu B, Ye X, Qu F, Liu X, Shi S, Yang W, Sheng J, et al. Follicle-stimulating hormone promotes age-related endometrial atrophy through cross-talk with transforming growth factor beta signal transduction pathway. Aging Cell. 14: 284-7. PMID 25393561 DOI: 10.1111/acel.12278  0.4
2014 Boyle AP, Araya CL, Brdlik C, Cayting P, Cheng C, Cheng Y, Gardner K, Hillier LW, Janette J, Jiang L, Kasper D, Kawli T, Kheradpour P, Kundaje A, Li JJ, et al. Comparative analysis of regulatory information and circuits across distant species. Nature. 512: 453-6. PMID 25164757 DOI: 10.1038/nature13668  0.4
2014 Gerstein MB, Rozowsky J, Yan KK, Wang D, Cheng C, Brown JB, Davis CA, Hillier L, Sisu C, Li JJ, Pei B, Harmanci AO, Duff MO, Djebali S, Alexander RP, et al. Comparative analysis of the transcriptome across distant species. Nature. 512: 445-8. PMID 25164755 DOI: 10.1038/nature13424  0.4
2014 Li JJ, Huang H, Bickel PJ, Brenner SE. Comparison of D. melanogaster and C. elegans developmental stages, tissues, and cells by modENCODE RNA-seq data. Genome Research. 24: 1086-101. PMID 24985912 DOI: 10.1101/gr.170100.113  0.4
2014 Li JJ, Bickel PJ, Biggin MD. System wide analyses have underestimated protein abundances and the importance of transcription in mammals. Peerj. 2: e270. PMID 24688849 DOI: 10.7717/peerj.270  0.52
2014 Li JJ, Bickel PJ, Biggin MD. System wide analyses have underestimated protein abundances and the importance of transcription in mammals Peerj. 2013: 1-26. DOI: 10.7717/peerj.270  0.4
2012 Fisher WW, Li JJ, Hammonds AS, Brown JB, Pfeiffer BD, Weiszmann R, MacArthur S, Thomas S, Stamatoyannopoulos JA, Eisen MB, Bickel PJ, Biggin MD, Celniker SE. DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 109: 21330-5. PMID 23236164 DOI: 10.1073/pnas.1209589110  0.4
2012 Gao Q, Ho C, Jia Y, Li JJ, Huang H. Biclustering of linear patterns in gene expression data. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 19: 619-31. PMID 22697238 DOI: 10.1089/cmb.2012.0032  0.4
2012 Zhang D, Lv P, Zhang R, Luo Q, Ding G, Yin L, Li J, Xu G, Qu F, Sheng J, Huang H. A new model for embryo implantation: coculture of blastocysts and Ishikawa cells. Gynecological Endocrinology : the Official Journal of the International Society of Gynecological Endocrinology. 28: 288-92. PMID 22106944 DOI: 10.3109/09513590.2011.631623  0.4
2011 Li JJ, Jiang CR, Brown JB, Huang H, Bickel PJ. Sparse linear modeling of next-generation mRNA sequencing (RNA-Seq) data for isoform discovery and abundance estimation. Proceedings of the National Academy of Sciences of the United States of America. 108: 19867-72. PMID 22135461 DOI: 10.1073/pnas.1113972108  0.4
2009 MacArthur S, Li XY, Li J, Brown JB, Chu HC, Zeng L, Grondona BP, Hechmer A, Simirenko L, Keränen SV, Knowles DW, Stapleton M, Bickel P, Biggin MD, Eisen MB. Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions. Genome Biology. 10: R80. PMID 19627575 DOI: 10.1186/gb-2009-10-7-r80  0.4
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