☰

Nathan P. Boley, Ph.D. - Publications

Affiliations: 
Biostatistics University of California, Berkeley, Berkeley, CA, United States 
Area:
numerical weather prediction, astronomy, genomics
Tree Info Similar researchers PubMed Report error

15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Hitz B, Lee JW, Jolanki O, Kagda M, Graham K, Sud P, Gabdank I, Strattan JS, Sloan C, Dreszer T, Rowe L, Podduturi N, Malladi V, Chan E, Davidson J, ... ... Boley N, et al. The ENCODE Uniform Analysis Pipelines. Research Square. PMID 37503119 DOI: 10.21203/rs.3.rs-3111932/v1  0.382
2023 Hitz BC, Lee JW, Jolanki O, Kagda MS, Graham K, Sud P, Gabdank I, Seth Strattan J, Sloan CA, Dreszer T, Rowe LD, Podduturi NR, Malladi VS, Chan ET, Davidson JM, ... ... Boley N, et al. The ENCODE Uniform Analysis Pipelines. Biorxiv : the Preprint Server For Biology. PMID 37066421 DOI: 10.1101/2023.04.04.535623  0.383
2021 Dachet F, Brown JB, Valyi-Nagy T, Narayan KD, Serafini A, Boley N, Gingeras TR, Celniker SE, Mohapatra G, Loeb JA. Selective time-dependent changes in activity and cell-specific gene expression in human postmortem brain. Scientific Reports. 11: 6078. PMID 33758256 DOI: 10.1038/s41598-021-85801-6  0.516
2019 John JAS, Gafni E, White B, Kannan A, Hansen L, Jaroszewicz A, Kundaje A, Boley N. Abstract 4349: Predicting gene expression from plasma cell-free DNA using both the fragment length and fragment position Cancer Research. 79: 4349-4349. DOI: 10.1158/1538-7445.Sabcs18-4349  0.456
2019 Wan N, Weinberg D, Liu T, Niehaus K, Delubac D, Kannan A, White B, Ariazi EA, Bailey M, Bertin M, Boley N, Bowen D, Cregg J, Drake A, Ennis R, et al. Su1658 – Machine Learning Enables Detection of Early-Stage Colorectal Cancer by Whole-Genome Sequencing of Plasma Cell-Free Dna Gastroenterology. 156. DOI: 10.1016/S0016-5085(19)38396-9  0.335
2018 Ursu O, Boley N, Taranova M, Wang YXR, Yardimci GG, Noble WS, Kundaje A. GenomeDISCO: A concordance score for chromosome conformation capture experiments using random walks on contact map graphs. Bioinformatics (Oxford, England). PMID 29554289 DOI: 10.1093/Bioinformatics/Bty164  0.34
2014 Gerstein MB, Rozowsky J, Yan KK, Wang D, Cheng C, Brown JB, Davis CA, Hillier L, Sisu C, Li JJ, Pei B, Harmanci AO, Duff MO, Djebali S, Alexander RP, ... ... Boley NP, et al. Comparative analysis of the transcriptome across distant species. Nature. 512: 445-8. PMID 25164755 DOI: 10.1038/Nature13424  0.698
2014 Chen ZX, Sturgill D, Qu J, Jiang H, Park S, Boley N, Suzuki AM, Fletcher AR, Plachetzki DC, FitzGerald PC, Artieri CG, Atallah J, Barmina O, Brown JB, Blankenburg KP, et al. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Research. 24: 1209-23. PMID 24985915 DOI: 10.1101/Gr.159384.113  0.68
2014 Brown JB, Boley N, Eisman R, May GE, Stoiber MH, Duff MO, Booth BW, Wen J, Park S, Suzuki AM, Wan KH, Yu C, Zhang D, Carlson JW, Cherbas L, et al. Diversity and dynamics of the Drosophila transcriptome. Nature. 512: 393-9. PMID 24670639 DOI: 10.1038/Nature12962  0.694
2014 Boley N, Wan KH, Bickel PJ, Celniker SE. Navigating and mining modENCODE data. Methods (San Diego, Calif.). 68: 38-47. PMID 24636835 DOI: 10.1016/J.Ymeth.2014.03.007  0.68
2014 Boley N, Stoiber MH, Booth BW, Wan KH, Hoskins RA, Bickel PJ, Celniker SE, Brown JB. Genome-guided transcript assembly by integrative analysis of RNA sequence data. Nature Biotechnology. 32: 341-6. PMID 24633242 DOI: 10.1038/Nbt.2850  0.722
2012 Atherton J, Boley N, Brown B, Ogawa N, Davidson SM, Eisen MB, Biggin MD, Bickel P. A model for sequential evolution of ligands by exponential enrichment (SELEX) data Annals of Applied Statistics. 6: 928-949. DOI: 10.1214/12-Aoas537  0.544
2011 Graveley BR, Brooks AN, Carlson JW, Duff MO, Landolin JM, Yang L, Artieri CG, van Baren MJ, Boley N, Booth BW, Brown JB, Cherbas L, Davis CA, Dobin A, Li R, et al. The developmental transcriptome of Drosophila melanogaster. Nature. 471: 473-9. PMID 21179090 DOI: 10.1038/Nature09715  0.721
2011 Hoskins RA, Landolin JM, Brown JB, Sandler JE, Takahashi H, Lassmann T, Yu C, Booth BW, Zhang D, Wan KH, Yang L, Boley N, Andrews J, Kaufman TC, Graveley BR, et al. Genome-wide analysis of promoter architecture in Drosophila melanogaster. Genome Research. 21: 182-92. PMID 21177961 DOI: 10.1101/Gr.112466.110  0.691
2010 Bickel PJ, Boley N, Brown JB, Huang H, Zhang NR. Subsampling methods for genomic inference Annals of Applied Statistics. 4: 1660-1697. DOI: 10.1214/10-Aoas363  0.623
Show low-probability matches.