Yang Xie, Ph.D. - Publications

Affiliations: 
Yale University, New Haven, CT 
Area:
Protein degradation, ubiquitin

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Year Citation  Score
2018 Hickey CM, Xie Y, Hochstrasser M. DNA Binding by the MATα2 Transcription Factor Controls its Access to Alternative Ubiquitin-modification Pathways. Molecular Biology of the Cell. PMID 29298839 DOI: 10.1091/Mbc.E17-10-0589  0.639
2013 Xie Y, Avello M, Schirle M, McWhinnie E, Feng Y, Bric-Furlong E, Wilson C, Nathans R, Zhang J, Kirschner MW, Huang SM, Cong F. Deubiquitinase FAM/USP9X interacts with the E3 ubiquitin ligase SMURF1 protein and protects it from ligase activity-dependent self-degradation. The Journal of Biological Chemistry. 288: 2976-85. PMID 23184937 DOI: 10.1074/Jbc.M112.430066  0.421
2012 Ruffner H, Sprunger J, Charlat O, Leighton-Davies J, Grosshans B, Salathe A, Zietzling S, Beck V, Therier M, Isken A, Xie Y, Zhang Y, Hao H, Shi X, Liu D, et al. R-Spondin potentiates Wnt/β-catenin signaling through orphan receptors LGR4 and LGR5. Plos One. 7: e40976. PMID 22815884 DOI: 10.1371/Journal.Pone.0040976  0.307
2012 Hao HX, Xie Y, Zhang Y, Charlat O, Oster E, Avello M, Lei H, Mickanin C, Liu D, Ruffner H, Mao X, Ma Q, Zamponi R, Bouwmeester T, Finan PM, et al. ZNRF3 promotes Wnt receptor turnover in an R-spondin-sensitive manner. Nature. 485: 195-200. PMID 22575959 DOI: 10.1038/Nature11019  0.305
2010 Xie Y, Rubenstein EM, Matt T, Hochstrasser M. SUMO-independent in vivo activity of a SUMO-targeted ubiquitin ligase toward a short-lived transcription factor. Genes & Development. 24: 893-903. PMID 20388728 DOI: 10.1101/Gad.1906510  0.644
2009 Xu P, Duong DM, Seyfried NT, Cheng D, Xie Y, Robert J, Rush J, Hochstrasser M, Finley D, Peng J. Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation. Cell. 137: 133-45. PMID 19345192 DOI: 10.1016/J.Cell.2009.01.041  0.551
2007 Xie Y, Kerscher O, Kroetz MB, McConchie HF, Sung P, Hochstrasser M. The yeast Hex3.Slx8 heterodimer is a ubiquitin ligase stimulated by substrate sumoylation. The Journal of Biological Chemistry. 282: 34176-84. PMID 17848550 DOI: 10.1074/Jbc.M706025200  0.542
Low-probability matches (unlikely to be authored by this person)
2013 Jiang X, Hao HX, Growney JD, Woolfenden S, Bottiglio C, Ng N, Lu B, Hsieh MH, Bagdasarian L, Meyer R, Smith TR, Avello M, Charlat O, Xie Y, Porter JA, et al. Inactivating mutations of RNF43 confer Wnt dependency in pancreatic ductal adenocarcinoma. Proceedings of the National Academy of Sciences of the United States of America. 110: 12649-54. PMID 23847203 DOI: 10.1073/Pnas.1307218110  0.29
2006 Chen J, Mao S, Xie Y, Cao Z, Zhang Y, Liu J, Chen Z, Qu L, Gu H. Expression and inhibitory activity analysis of a 25-kD Bowman-Birk protease inhibitor in rice Chinese Science Bulletin. 51: 54-62. DOI: 10.1007/S11434-005-0937-8  0.287
2013 Xie Y, Zamponi R, Charlat O, Ramones M, Swalley S, Jiang X, Rivera D, Tschantz W, Lu B, Quinn L, Dimitri C, Parker J, Jeffery D, Wilcox SK, Watrobka M, et al. Interaction with both ZNRF3 and LGR4 is required for the signalling activity of R-spondin. Embo Reports. 14: 1120-6. PMID 24165923 DOI: 10.1038/Embor.2013.167  0.283
2016 Planas-Paz L, Orsini V, Boulter L, Calabrese D, Pikiolek M, Nigsch F, Xie Y, Roma G, Donovan A, Marti P, Beckmann N, Dill MT, Carbone W, Bergling S, Isken A, et al. The RSPO-LGR4/5-ZNRF3/RNF43 module controls liver zonation and size. Nature Cell Biology. PMID 27088858 DOI: 10.1038/Ncb3337  0.259
2015 Tanaka H, Takahashi T, Xie Y, Minami R, Yanagi Y, Hayashishita M, Suzuki R, Yokota N, Shimada M, Mizushima T, Kuwabara N, Kato R, Kawahara H. A conserved island of BAG6/Scythe is related to ubiquitin domains and participates in short hydrophobicity recognition. The Febs Journal. PMID 26663859 DOI: 10.1111/febs.13618  0.24
2001 Xie Y, Sun L, Kodadek T. TATA-binding protein and the Gal4 transactivator do not bind to promoters cooperatively. The Journal of Biological Chemistry. 275: 40797-803. PMID 11006288 DOI: 10.1074/Jbc.M007019200  0.226
2024 Xie Y, Xiao J, Ying Y, Liu J, Zhang L, Zeng X. Bioinformatic identification reveals a m6A-binding protein, IGF2BP2, as a novel tumor-promoting gene signature in thyroid carcinoma. Naunyn-Schmiedeberg's Archives of Pharmacology. PMID 38289368 DOI: 10.1007/s00210-024-02961-8  0.226
2016 Patidar PL, Motea EA, Fattah FJ, Zhou Y, Morales JC, Xie Y, Garner HR, Boothman DA. The Kub5-Hera/RPRD1B interactome: a novel role in preserving genetic stability by regulating DNA mismatch repair. Nucleic Acids Research. PMID 26819409 DOI: 10.1093/Nar/Gkv1492  0.218
2000 Xie Y, Denison C, Yang SH, Fancy DA, Kodadek T. Biochemical characterization of the TATA-binding protein-Gal4 activation domain complex. The Journal of Biological Chemistry. 275: 31914-20. PMID 10931832 DOI: 10.1074/Jbc.M003760200  0.214
2021 Zhong X, Wang T, Xie Y, Wang M, Zhang W, Dai L, Lai J, Nie X, He X, Madhusudhan T, Zeng H, Wang H. Activated Protein C Ameliorates Diabetic Cardiomyopathy Modulating OTUB1/YB-1/MEF2B Axis. Frontiers in Cardiovascular Medicine. 8: 758158. PMID 34778410 DOI: 10.3389/fcvm.2021.758158  0.211
2024 Yang ZY, Zhao C, Liu SL, Pan LJ, Zhu YD, Zhao JW, Wang HK, Ye YY, Qiang J, Shi LQ, Mei JW, Xie Y, Gong W, Shu YJ, Dong P, et al. NONO promotes gallbladder cancer cell proliferation by enhancing oncogenic RNA splicing of DLG1 through interaction with IGF2BP3/RBM14. Cancer Letters. 587: 216703. PMID 38341127 DOI: 10.1016/j.canlet.2024.216703  0.208
2011 Orvedahl A, Sumpter R, Xiao G, Ng A, Zou Z, Tang Y, Narimatsu M, Gilpin C, Sun Q, Roth M, Forst CV, Wrana JL, Zhang YE, Luby-Phelps K, Xavier RJ, ... Xie Y, et al. Image-based genome-wide siRNA screen identifies selective autophagy factors. Nature. 480: 113-7. PMID 22020285 DOI: 10.1038/Nature10546  0.207
2016 Planas-Paz L, Orsini V, Boulter L, Calabrese D, Pikiolek M, Nigsch F, Xie Y, Roma G, Donovan A, Marti P, Beckmann N, Dill MT, Carbone W, Bergling S, Isken A, et al. Corrigendum: The RSPO-LGR4/5-ZNRF3/RNF43 module controls liver zonation and size. Nature Cell Biology. 18: 1260. PMID 27784900 DOI: 10.1038/Ncb3428  0.207
2015 Zhou R, Xie Y, Hu H, Hu G, Patel VS, Zhang J, Yu K, Huang Y, Jiang H, Liang Z, Zheng YG, Luo C. Molecular Mechanism underlying PRMT1 Dimerization for SAM Binding and Methylase Activity. Journal of Chemical Information and Modeling. PMID 26562720 DOI: 10.1021/acs.jcim.5b00454  0.201
2015 Fu Q, Wang H, Xia M, Deng B, Shen H, Ji G, Li G, Xie Y. The effect of phytic acid on tight junctions in the human intestinal Caco-2 cell line and its mechanism. European Journal of Pharmaceutical Sciences : Official Journal of the European Federation For Pharmaceutical Sciences. PMID 26385515 DOI: 10.1016/j.ejps.2015.09.009  0.2
2015 Lee S, Kopp F, Chang TC, Sataluri A, Chen B, Sivakumar S, Yu H, Xie Y, Mendell JT. Noncoding RNA NORAD Regulates Genomic Stability by Sequestering PUMILIO Proteins. Cell. PMID 26724866 DOI: 10.1016/J.Cell.2015.12.017  0.2
1999 Wang M, Xie Y, Girnita L, Nilsson G, Dricu A, Wejde J, Larsson O. Regulatory role of mevalonate and N-linked glycosylation in proliferation and expression of the EWS/FLI-1 fusion protein in Ewing's sarcoma cells. Experimental Cell Research. 246: 38-46. PMID 9882513 DOI: 10.1006/excr.1998.4280  0.197
2019 Ting TC, Goralski M, Klein K, Wang B, Kim J, Xie Y, Nijhawan D. Aryl Sulfonamides Degrade RBM39 and RBM23 by Recruitment to CRL4-DCAF15. Cell Reports. 29: 1499-1510.e6. PMID 31693891 DOI: 10.1016/j.celrep.2019.09.079  0.197
2016 Zhang X, Zhang Y, Yang G, Xie Y, Xu L, An J, Cui L, Feng Y. Modulation of the thermostability and substrate specificity of Candida rugosa lipase1 by altering the acyl-binding residue Gly414 at the α-helix-connecting bend. Enzyme and Microbial Technology. 82: 34-41. PMID 26672446 DOI: 10.1016/j.enzmictec.2015.08.006  0.189
2015 Xu L, Choi S, Xie Y, Sze JY. Cell-Autonomous Gβ Signaling Defines Neuron-Specific Steady State Serotonin Synthesis in Caenorhabditis elegans. Plos Genetics. 11: e1005540. PMID 26402365 DOI: 10.1371/journal.pgen.1005540  0.189
2024 Guo Y, Li X, Xie Y, Wang Y. What influences the activity of Degrader-Antibody conjugates (DACs). European Journal of Medicinal Chemistry. 268: 116216. PMID 38387330 DOI: 10.1016/j.ejmech.2024.116216  0.184
2015 Wang H, Yan T, Xie Y, Zhao M, Che Y, Zhang J, Liu H, Cao L, Cheng X, Xie Y, Li F, Qi Q, Wang G, Hao H. Mechanism-based inhibitory and peroxisome proliferator-activated receptor α-dependent modulating effects of silybin on principal hepatic drug-metabolizing enzymes. Drug Metabolism and Disposition: the Biological Fate of Chemicals. 43: 444-54. PMID 25587127 DOI: 10.1124/dmd.114.061622  0.183
2015 Maxfield KE, Taus PJ, Corcoran K, Wooten J, Macion J, Zhou Y, Borromeo M, Kollipara RK, Yan J, Xie Y, Xie XJ, Whitehurst AW. Comprehensive functional characterization of cancer-testis antigens defines obligate participation in multiple hallmarks of cancer. Nature Communications. 6: 8840. PMID 26567849 DOI: 10.1038/ncomms9840  0.18
2020 Liu Y, Yu J, Xie Y, Li M, Wang F, Zhang J, Qi J. EZH2 regulates sFRP4 expression without affecting the methylation of sFRP4 promoter DNA in colorectal cancer cell lines. Experimental and Therapeutic Medicine. 20: 33. PMID 32952624 DOI: 10.3892/etm.2020.9160  0.18
2017 Han T, Goralski M, Gaskill N, Capota E, Kim J, Ting TC, Xie Y, Williams NS, Nijhawan D. Anticancer sulfonamides target splicing by inducing RBM39 degradation via recruitment to DCAF15. Science (New York, N.Y.). PMID 28302793 DOI: 10.1126/science.aal3755  0.179
2006 Jeong KS, Xie Y, Hiasa H, Khodursky AB. Analysis of pleiotropic transcriptional profiles: a case study of DNA gyrase inhibition. Plos Genetics. 2: e152. PMID 17009874 DOI: 10.1371/Journal.Pgen.0020152  0.174
2018 Xie Y, Xu L, Wang Y, Fan L, Chen Y, Tang M, Luo X, Liu L. Comparative proteomic analysis provides insight into a complex regulatory network of taproot formation in radish ( L.). Horticulture Research. 5: 51. PMID 30302255 DOI: 10.1038/s41438-018-0057-7  0.172
2021 Wijshake T, Zou Z, Chen B, Zhong L, Xiao G, Xie Y, Doench JG, Bennett L, Levine B. Tumor-suppressor function of Beclin 1 in breast cancer cells requires E-cadherin. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33495338 DOI: 10.1073/pnas.2020478118  0.171
2015 Zhao B, Zong G, Xie Y, Li J, Wang H, Bian E. Downregulation of ubiquitin-associated protein 2-like with a short hairpin RNA inhibits human glioma cell growth in vitro. International Journal of Molecular Medicine. 36: 1012-8. PMID 26310274 DOI: 10.3892/ijmm.2015.2323  0.17
2015 Yang S, Li C, Xie Y, Cui X, Li X, Wei J, Zhang Y, Yu Y, Wang Y, Zhang S, Zhang Q, Sun D. Detection of functional polymorphisms influencing the promoter activity of the SAA2 gene and their association with milk production traits in Chinese Holstein cows. Animal Genetics. PMID 26373797 DOI: 10.1111/age.12332  0.169
2023 Xiao J, Xie Y, Duan Q, Liu T, Ye R, Duan X, Le Z, Deng N, Liu F. LIM Homeobox 2 Increases Adhesion-Regulating Molecule 1 Transcription to Facilitate the Pathological Progression of Oxidized Low-Density Lipoprotein-Stimulated Atherosclerotic Cell Models. International Heart Journal. 64: 750-758. PMID 37518356 DOI: 10.1536/ihj.22-669  0.167
2010 Xie Y, Pan W, Jeong KS, Xiao G, Khodursky AB. A Bayesian approach to joint modeling of protein-DNA binding, gene expression and sequence data. Statistics in Medicine. 29: 489-503. PMID 20049751 DOI: 10.1002/Sim.3815  0.166
2023 Niu L, Lu YJ, Zu XW, Yang W, Shen FK, Xu YY, Jiang M, Xie Y, Li SY, Gao J, Bai G. Magnolol alleviates pulmonary fibrosis inchronic obstructive pulmonary disease by targeting transient receptor potential vanilloid 4-ankyrin repeat domain. Phytotherapy Research : Ptr. PMID 37282760 DOI: 10.1002/ptr.7907  0.165
2018 Yi L, Tong L, Li T, Hai L, Abeysekera IR, Tao Z, Ma H, Liu P, Xie Y, Li J, Yuan F, Yu S, Yang X. Bioinformatic analyses reveal the key pathways and genes in the CXCR4 mediated mesenchymal subtype of glioblastoma. Molecular Medicine Reports. PMID 29767255 DOI: 10.3892/mmr.2018.9011  0.164
2009 Park S, Hatanpaa KJ, Xie Y, Mickey BE, Madden CJ, Raisanen JM, Ramnarain DB, Xiao G, Saha D, Boothman DA, Zhao D, Bachoo RM, Pieper RO, Habib AA. The receptor interacting protein 1 inhibits p53 induction through NF-kappaB activation and confers a worse prognosis in glioblastoma. Cancer Research. 69: 2809-16. PMID 19339267 DOI: 10.1158/0008-5472.Can-08-4079  0.164
2013 Potts MB, Kim HS, Fisher KW, Hu Y, Carrasco YP, Bulut GB, Ou YH, Herrera-Herrera ML, Cubillos F, Mendiratta S, Xiao G, Hofree M, Ideker T, Xie Y, Huang LJ, et al. Using functional signature ontology (FUSION) to identify mechanisms of action for natural products. Science Signaling. 6: ra90. PMID 24129700 DOI: 10.1126/Scisignal.2004657  0.163
2010 Whitehurst AW, Xie Y, Purinton SC, Cappell KM, Swanik JT, Larson B, Girard L, Schorge JO, White MA. Tumor antigen acrosin binding protein normalizes mitotic spindle function to promote cancer cell proliferation. Cancer Research. 70: 7652-61. PMID 20876808 DOI: 10.1158/0008-5472.CAN-10-0840  0.163
2015 Chen L, Zhang GX, Zhou Y, Zhang CX, Xie YY, Xiang C, He XY, Zhang Q, Liu G. BAC transgenic mice provide evidence that p53 expression is highly regulated in vivo. Cell Death & Disease. 6: e1878. PMID 26379189 DOI: 10.1038/cddis.2015.224  0.162
2023 Yang DM, Zhou Q, Furman-Cline L, Cheng X, Luo D, Lai H, Li Y, Jin KW, Yao B, Leavey PJ, Rakheja D, Lo T, Hall D, Barkauskas DA, Shulman DS, ... ... Xie Y, et al. Osteosarcoma Explorer: A Data Commons With Clinical, Genomic, Protein, and Tissue Imaging Data for Osteosarcoma Research. Jco Clinical Cancer Informatics. 7: e2300104. PMID 37956387 DOI: 10.1200/CCI.23.00104  0.162
2015 DeNicola GM, Chen PH, Mullarky E, Sudderth JA, Hu Z, Wu D, Tang H, Xie Y, Asara JM, Huffman KE, Wistuba II, Minna JD, DeBerardinis RJ, Cantley LC. NRF2 regulates serine biosynthesis in non-small cell lung cancer. Nature Genetics. PMID 26482881 DOI: 10.1038/Ng.3421  0.162
2020 Dong X, Yang Y, Zou Z, Zhao Y, Ci B, Zhong L, Bhave M, Wang L, Kuo YC, Zang X, Zhong R, Aguilera ER, Richardson RB, Simonetti B, Schoggins JW, ... ... Xie Y, et al. Sorting nexin 5 mediates virus-induced autophagy and immunity. Nature. PMID 33328639 DOI: 10.1038/s41586-020-03056-z  0.162
2015 Zhou X, Wei J, Chen F, Xiao X, Huang T, He Q, Wang S, Du C, Mo Y, Lin L, Xie Y, Wei L, Lan Y, Murata M, Huang G, et al. Epigenetic downregulation of the ISG15-conjugating enzyme UbcH8 impairs lipolysis and correlates with poor prognosis in nasopharyngeal carcinoma. Oncotarget. PMID 26506425 DOI: 10.18632/oncotarget.6218  0.159
2023 Albadari N, Xie Y, Liu T, Wang R, Gu L, Zhou M, Wu Z, Li W. Synthesis and biological evaluation of dual MDM2/XIAP inhibitors based on the tetrahydroquinoline scaffold. European Journal of Medicinal Chemistry. 255: 115423. PMID 37130471 DOI: 10.1016/j.ejmech.2023.115423  0.159
2022 Lu YJ, Niu L, Shen FK, Yang W, Xie Y, Li SY, Jiang M, Bai G. Ligustilide attenuates airway remodeling in COPD mice by covalently binding to MH2 domain of Smad3 in pulmonary epithelium, disrupting the Smad3-SARA interaction. Phytotherapy Research : Ptr. PMID 36216328 DOI: 10.1002/ptr.7655  0.158
2023 Zemke NR, Armand EJ, Wang W, Lee S, Zhou J, Li YE, Liu H, Tian W, Nery JR, Castanon RG, Bartlett A, Osteen JK, Li D, Zhuo X, Xu V, ... ... Xie Y, et al. Conserved and divergent gene regulatory programs of the mammalian neocortex. Nature. 624: 390-402. PMID 38092918 DOI: 10.1038/s41586-023-06819-6  0.158
2023 Lin CC, Chang TC, Wang Y, Guo L, Gao Y, Bikorimana E, Lemoff A, Fang Y, Zhang H, Zhang Y, Ye D, Soria-Bretones I, Servetto A, Lee KM, Luo X, ... ... Xie Y, et al. Protein arginine methyltransferase 5 (PRMT5) is an actionable therapeutic target in CDK4/6 inhibitor-resistant ER+/RB-deficient breast cancer. Research Square. PMID 37502925 DOI: 10.21203/rs.3.rs-2966905/v1  0.157
2009 Wan L, Su L, Xie Y, Liu Y, Wang Y, Wang Z. Protein receptor for activated C kinase 1 is involved in morphine reward in mice. Neuroscience. 161: 734-42. PMID 19341783 DOI: 10.1016/j.neuroscience.2009.03.064  0.156
2022 Zhong X, Wang T, Zhang W, Wang M, Xie Y, Dai L, He X, Madhusudhan T, Zeng H, Wang H. ERK/RSK-mediated phosphorylation of Y-box binding protein-1 aggravates diabetic cardiomyopathy by suppressing its interaction with deubiquitinase OTUB1. The Journal of Biological Chemistry. 101989. PMID 35490780 DOI: 10.1016/j.jbc.2022.101989  0.155
2015 Wang W, Niu Z, Wang Y, Li Y, Zou H, Yang L, Meng M, Wei C, Li Q, Duan L, Xie Y, Zhang Y, Cao Y, Han S, Hou Z, et al. Comparative transcriptome analysis of atrial septal defect identify dysregulated genes during heart septum morphogenesis. Gene. PMID 26375510 DOI: 10.1016/j.gene.2015.09.016  0.154
2015 Ma P, Bian X, Jia Z, Guo X, Xie Y. De novo sequencing and comprehensive analysis of the mutant transcriptome from purple sweet potato (Ipomoea batatas L.). Gene. PMID 26410411 DOI: 10.1016/j.gene.2015.09.056  0.154
2023 Ying J, Wang Y, Xu L, Yao S, Wang K, Dong J, Ma Y, Wang L, Xie Y, Yan K, Li J, Liu L. RsGLK2.1-RsNF-YA9a module positively regulates the chlorophyll biosynthesis by activating RsHEMA2 in radish taproot. Plant Science : An International Journal of Experimental Plant Biology. 111768. PMID 37343602 DOI: 10.1016/j.plantsci.2023.111768  0.154
2019 Kopp F, Elguindy MM, Yalvac ME, Zhang H, Chen B, Gillett FA, Lee S, Sivakumar S, Yu H, Xie Y, Mishra P, Sahenk Z, Mendell JT. PUMILIO hyperactivity drives premature aging of -deficient mice. Elife. 8. PMID 30735131 DOI: 10.7554/Elife.42650  0.153
2015 Su S, Zhu X, Lin L, Chen X, Wang Y, Zi J, Dong Y, Xie Y, Zhu Y, Zhang J, Zhu J, Xu D, Xu N, Lou X, Liu S. Lowering endogenous cathepsin D abundance results in ROS accumulation and cell senescence. Molecular & Cellular Proteomics : McP. PMID 26657266 DOI: 10.1074/mcp.M115.050179  0.152
2015 Li H, Zhang H, Di C, Xie Y, Zhou X, Yan J, Zhao Q. Comparative proteomic profiling and possible toxicological mechanism of acute injury induced by carbon ion radiation in pubertal mice testes. Reproductive Toxicology (Elmsford, N.Y.). PMID 26257270 DOI: 10.1016/j.reprotox.2015.07.079  0.151
2022 Bhattacharyya S, Kollipara RK, Orquera-Tornakian G, Goetsch S, Zhang M, Perry C, Li B, Shelton JM, Bhakta M, Duan J, Xie Y, Xiao G, Evers BM, Hon GC, Kittler R, et al. Global chromatin landscapes identify candidate noncoding modifiers of cardiac rhythm. The Journal of Clinical Investigation. PMID 36454649 DOI: 10.1172/JCI153635  0.151
2019 Wang Y, Wang J, Sun J, Xie Y, Liu C, Huang S. Study on Specific and Non-Specific Interactions Between BSA and Anti-BSA in Fluoroquinolone Antibiotic Solution by AFM. Journal of Nanoscience and Nanotechnology. 19: 7584-7590. PMID 31196264 DOI: 10.1166/jnn.2019.16849  0.15
2020 Yu J, Xie Y, Liu Y, Wang F, Li M, Qi J. MBD2 and EZH2 regulate the expression of SFRP1 without affecting its methylation status in a colorectal cancer cell line. Experimental and Therapeutic Medicine. 20: 242. PMID 33178340 DOI: 10.3892/etm.2020.9372  0.15
2024 Li Z, Ying Y, Zeng X, Liu J, Xie Y, Deng Z, Hu Z, Yang J. DNMT1/DNMT3a-mediated promoter hypermethylation and transcription activation of ICAM5 augments thyroid carcinoma progression. Functional & Integrative Genomics. 24: 12. PMID 38228798 DOI: 10.1007/s10142-024-01293-3  0.15
2015 Wang J, Luo C, Shan C, You Q, Lu J, Elf S, Zhou Y, Wen Y, Vinkenborg JL, Fan J, Kang H, Lin R, Han D, Xie Y, Karpus J, et al. Inhibition of human copper trafficking by a small molecule significantly attenuates cancer cell proliferation. Nature Chemistry. 7: 968-979. PMID 26587712 DOI: 10.1038/Nchem.2381  0.149
2022 Gao L, Xie Y, Su Y, Mehmood T, Bao R, Fan H, Peng L. Elucidating the negatively influential and potentially toxic mechanism of single and combined micro-sized polyethylene and petroleum to Chlorella vulgaris at the cellular and molecular levels. Ecotoxicology and Environmental Safety. 245: 114102. PMID 36152431 DOI: 10.1016/j.ecoenv.2022.114102  0.149
2015 Xiao ZP, Wei W, Wang PF, Shi WK, Zhu N, Xie MQ, Sun YW, Li LX, Xie YX, Zhu LS, Tang N, Ouyang H, Li XH, Wang GC, Zhu HL. Synthesis and evaluation of new tyrosyl-tRNA synthetase inhibitors as antibacterial agents based on a N2-(arylacetyl)glycinanilide scaffold. European Journal of Medicinal Chemistry. 102: 631-8. PMID 26318069 DOI: 10.1016/j.ejmech.2015.08.025  0.149
2022 Povedano JM, Li V, Lake KE, Bai X, Rallabandi R, Kim J, Xie Y, De Brabander JK, McFadden DG. TK216 targets microtubules in Ewing sarcoma cells. Cell Chemical Biology. PMID 35803262 DOI: 10.1016/j.chembiol.2022.06.002  0.149
2023 Druzak SA, Tardelli M, Mays SG, El Bejjani M, Mo X, Maner-Smith KM, Bowen T, Cato ML, Tillman MC, Sugiyama A, Xie Y, Fu H, Cohen DE, Ortlund EA. Ligand dependent interaction between PC-TP and PPARδ mitigates diet-induced hepatic steatosis in male mice. Nature Communications. 14: 2748. PMID 37173315 DOI: 10.1038/s41467-023-38010-w  0.148
2018 Liu X, Zeng L, Zhao Z, Xie Y, Wang S, Zhang J, He Y, Zou Z, Zhang J, Tao A. Construction, Expression, and Characterization of rSEA-EGF and In Vitro Evaluation of its Antitumor Activity Against Nasopharyngeal Cancer. Technology in Cancer Research & Treatment. 17: 1533033818762910. PMID 29551087 DOI: 10.1177/1533033818762910  0.147
2017 Golden RJ, Chen B, Li T, Braun J, Manjunath H, Chen X, Wu J, Schmid V, Chang TC, Kopp F, Ramirez-Martinez A, Tagliabracci VS, Chen ZJ, Xie Y, Mendell JT. An Argonaute phosphorylation cycle promotes microRNA-mediated silencing. Nature. PMID 28114302 DOI: 10.1038/Nature21025  0.147
2020 Povedano JM, Rallabandi R, Bai X, Ye X, Liou J, Chen H, Kim J, Xie Y, Posner B, Rice L, De Brabander JK, McFadden DG. A Multipronged Approach Establishes Covalent Modification of β-Tubulin as the Mode of Action of Benzamide Anti-cancer Toxins. Journal of Medicinal Chemistry. PMID 33180487 DOI: 10.1021/acs.jmedchem.0c01482  0.146
2021 Xie Y, Wang F, Yu J, Zhang J, Liu Y, Li M, Qi J. Silencing of MBD2 and EZH2 inhibits the proliferation of colorectal carcinoma cells by rescuing the expression of SFRP. Oncology Reports. 46. PMID 34617573 DOI: 10.3892/or.2021.8201  0.146
2015 Xie Y, McGill MR, Cook SF, Sharpe MR, Winefield RD, Wilkins DG, Rollins DE, Jaeschke H. Time course of acetaminophen-protein adducts and acetaminophen metabolites in circulation of overdose patients and in HepaRG cells. Xenobiotica; the Fate of Foreign Compounds in Biological Systems. 1-9. PMID 25869248 DOI: 10.3109/00498254.2015.1026426  0.146
2007 Xie Y, Pan W, Jeong KS, Khodursky A. Incorporating prior information via shrinkage: a combined analysis of genome-wide location data and gene expression data. Statistics in Medicine. 26: 2258-75. PMID 16958153 DOI: 10.1002/Sim.2703  0.146
2023 Wang M, Liu Y, Dai L, Zhong X, Zhang W, Xie Y, Zeng H, Wang H. ONX0914 inhibition of immunoproteasome subunit LMP7 ameliorates diabetic cardiomyopathy via restraining endothelial-mesenchymal transition. Clinical Science (London, England : 1979). 137: 1297-1309. PMID 37551616 DOI: 10.1042/CS20230732  0.145
2014 Kwon I, Xiang S, Kato M, Wu L, Theodoropoulos P, Wang T, Kim J, Yun J, Xie Y, McKnight SL. Poly-dipeptides encoded by the C9orf72 repeats bind nucleoli, impede RNA biogenesis, and kill cells. Science (New York, N.Y.). 345: 1139-45. PMID 25081482 DOI: 10.1126/science.1254917  0.145
2017 Liu X, Zeng L, Zhao Z, He J, Xie Y, Xiao L, Wang S, Zhang J, Zou Z, He Y, Tao A, Zhang J. PBMC activation via the ERK and STAT signaling pathways enhances the anti-tumor activity of Staphylococcal enterotoxin A. Molecular and Cellular Biochemistry. PMID 28470343 DOI: 10.1007/s11010-017-3038-5  0.144
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2004 Xie Y, Jeong KS, Pan W, Khodursky A, Carlin BP. A case study on choosing normalization methods and test statistics for two-channel microarray data. Comparative and Functional Genomics. 5: 432-44. PMID 18629172 DOI: 10.1002/Cfg.416  0.132
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2019 Yi L, Zhou X, Li T, Liu P, Hai L, Tong L, Ma H, Tao Z, Xie Y, Zhang C, Yu S, Yang X. Notch1 signaling pathway promotes invasion, self-renewal and growth of glioma initiating cells via modulating chemokine system CXCL12/CXCR4. Journal of Experimental & Clinical Cancer Research : Cr. 38: 339. PMID 31382985 DOI: 10.1186/s13046-019-1319-4  0.097
2015 Hudait MK, Clavel MB, Goley PS, Xie Y, Heremans J. Magnetotransport Properties of Epitaxial Ge/AlAs Heterostructures Integrated on GaAs and Silicon. Acs Applied Materials & Interfaces. PMID 26413844 DOI: 10.1021/Acsami.5B05814  0.097
2022 Cai L, DeBerardinis RJ, Xiao G, Minna JD, Xie Y. A Pan-Cancer Assessment of / Co-Mutations. Cancers. 14. PMID 36077736 DOI: 10.3390/cancers14174199  0.097
2021 Xu C, Wang X, Lim J, Xiao G, Xie Y. RCRdiff: A fully integrated Bayesian method for differential expression analysis using raw NanoString nCounter data. Statistics in Medicine. PMID 34773277 DOI: 10.1002/sim.9250  0.096
2023 Zu S, Li YE, Wang K, Armand EJ, Mamde S, Amaral ML, Wang Y, Chu A, Xie Y, Miller M, Xu J, Wang Z, Zhang K, Jia B, Hou X, et al. Single-cell analysis of chromatin accessibility in the adult mouse brain. Nature. 624: 378-389. PMID 38092917 DOI: 10.1038/s41586-023-06824-9  0.096
2021 Cai L, Liu H, Huang F, Fujimoto J, Girard L, Chen J, Li Y, Zhang YA, Deb D, Stastny V, Pozo K, Kuo CS, Jia G, Yang C, Zou W, ... ... Xie Y, et al. Cell-autonomous immune gene expression is repressed in pulmonary neuroendocrine cells and small cell lung cancer. Communications Biology. 4: 314. PMID 33750914 DOI: 10.1038/s42003-021-01842-7  0.096
2013 Wu Q, Ishikawa T, Sirianni R, Tang H, McDonald JG, Yuhanna IS, Thompson B, Girard L, Mineo C, Brekken RA, Umetani M, Euhus DM, Xie Y, Shaul PW. 27-Hydroxycholesterol promotes cell-autonomous, ER-positive breast cancer growth. Cell Reports. 5: 637-45. PMID 24210818 DOI: 10.1016/J.Celrep.2013.10.006  0.096
2016 Zang C, Wang T, Deng K, Li B, Hu S, Qin Q, Xiao T, Zhang S, Meyer CA, He HH, Brown M, Liu JS, Xie Y, Liu XS. High-dimensional genomic data bias correction and data integration using MANCIE. Nature Communications. 7: 11305. PMID 27072482 DOI: 10.1038/Ncomms11305  0.096
2021 Xie Y, Ying J, Tang M, Wang Y, Xu L, Liu M, Liu L. Genome-wide identification of AUX/IAA in radish and functional characterization of RsIAA33 gene during taproot thickening. Gene. 145782. PMID 34146634 DOI: 10.1016/j.gene.2021.145782  0.096
2023 Wen Z, Lin YH, Wang S, Fujiwara N, Rong R, Jin KW, Yang DM, Yao B, Yang S, Wang T, Xie Y, Hoshida Y, Zhu H, Xiao G. Deep-Learning-Based Hepatic Ploidy Quantification Using H&E Histopathology Images. Genes. 14. PMID 37107679 DOI: 10.3390/genes14040921  0.096
2023 Xie Y, Li J, Tao Q, Zeng C, Chen Y. Identification of a Diagnosis and Therapeutic Inflammatory Response-Related Gene Signature Associated with Esophageal Adenocarcinoma. Critical Reviews in Eukaryotic Gene Expression. 33: 65-80. PMID 37602454 DOI: 10.1615/CritRevEukaryotGeneExpr.2023048608  0.095
2016 Kim J, Kim MS, Koh AY, Xie Y, Zhan X. FMAP: Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies. Bmc Bioinformatics. 17: 420. PMID 27724866 DOI: 10.1186/s12859-016-1278-0  0.095
2019 An Y, Wang P, Xu P, Tung HC, Xie Y, Kirisci L, Xu M, Ren S, Tian X, Ma X, Xie W. An unexpected role of cholesterol sulfotransferase and its regulation in sensitizing mice to acetaminophen induced liver injury. Molecular Pharmacology. PMID 30944208 DOI: 10.1124/mol.118.114819  0.095
2011 Ma S, Huang J, Wei F, Xie Y, Fang K. Integrative analysis of multiple cancer prognosis studies with gene expression measurements. Statistics in Medicine. 30: 3361-71. PMID 22105693 DOI: 10.1002/Sim.4337  0.095
2022 Xie Y, Jia Y, Li Z, Hu F. Scavenger receptor A in immunity and autoimmune diseases: Compelling evidence for targeted therapy. Expert Opinion On Therapeutic Targets. PMID 35510370 DOI: 10.1080/14728222.2022.2072729  0.095
2015 Chen Y, Huang XJ, Yu N, Xie Y, Zhang K, Wen F, Liu H, Di Q. HMGB1 Contributes to the Expression of P-Glycoprotein in Mouse Epileptic Brain through Toll-Like Receptor 4 and Receptor for Advanced Glycation End Products. Plos One. 10: e0140918. PMID 26485677 DOI: 10.1371/journal.pone.0140918  0.095
2012 Jeong Y, Xie Y, Lee W, Bookout AL, Girard L, Raso G, Behrens C, Wistuba II, Gadzar AF, Minna JD, Mangelsdorf DJ. Research resource: Diagnostic and therapeutic potential of nuclear receptor expression in lung cancer. Molecular Endocrinology (Baltimore, Md.). 26: 1443-54. PMID 22700587 DOI: 10.1210/me.2011-1382  0.095
2015 Ding LH, Park S, Xie Y, Girard L, Minna JD, Story MD. Elucidation of changes in molecular signalling leading to increased cellular transformation in oncogenically progressed human bronchial epithelial cells exposed to radiations of increasing LET. Mutagenesis. PMID 26001755 DOI: 10.1093/mutage/gev028  0.095
2022 Yang J, Ying Y, Zeng X, Liu J, Xie Y, Deng Z, Hu Z, Li Z. Transcription Factor E2F1 Exacerbates Papillary Thyroid Carcinoma Cell Growth and Invasion Upregulation of LINC00152. Analytical Cellular Pathology (Amsterdam). 2022: 7081611. PMID 35592867 DOI: 10.1155/2022/7081611  0.094
2015 Hu S, Ma L, Xie Y, Li F, Fan Z, Wang F, Wang Q, Wang Y, Kang X, Wu G. Hydrothermal synthesis of oxygen functionalized S-P codoped g-C3N4 nanorods with outstanding visible light activity under anoxic conditions. Dalton Transactions (Cambridge, England : 2003). PMID 26571403 DOI: 10.1039/c5dt04035c  0.094
2015 Long J, Xie Y, Yin J, Lu W, Fang S. SphK1 promotes tumor cell migration and invasion in colorectal cancer. Tumour Biology : the Journal of the International Society For Oncodevelopmental Biology and Medicine. PMID 26662312 DOI: 10.1007/s13277-015-4542-4  0.094
2020 Kim J, Greenberg DE, Pifer R, Jiang S, Xiao G, Shelburne SA, Koh A, Xie Y, Zhan X. VAMPr: VAriant Mapping and Prediction of antibiotic resistance via explainable features and machine learning. Plos Computational Biology. 16: e1007511. PMID 31929521 DOI: 10.1371/Journal.Pcbi.1007511  0.094
2015 Li Y, Xie Y, Cui D, Ma Y, Sui L, Zhu C, Kong H, Kong Y. Osteopontin Promotes Invasion, Migration and Epithelial-Mesenchymal Transition of Human Endometrial Carcinoma Cell HEC-1A Through AKT and ERK1/2 Signaling. Cellular Physiology and Biochemistry : International Journal of Experimental Cellular Physiology, Biochemistry, and Pharmacology. 37: 1503-1512. PMID 26509489 DOI: 10.1159/000438518  0.094
2015 Lv M, Xie Y, Wang Y, Sun X, Wu F, Chen H, Wang S, Shen C, Chen Z, Ni S, Liu G, Xu X. Bismuth and chromium co-doped strontium titanates and their photocatalytic properties under visible light irradiation. Physical Chemistry Chemical Physics : Pccp. PMID 26387833 DOI: 10.1039/C5Cp03889H  0.094
2021 Zhang Y, Xie Y, Hao Z, Zhou P, Wang P, Fang S, Li L, Xu S, Xia Y. Umbilical Mesenchymal Stem Cell-Derived Exosome-Encapsulated Hydrogels Accelerate Bone Repair by Enhancing Angiogenesis. Acs Applied Materials & Interfaces. PMID 33856781 DOI: 10.1021/acsami.0c22671  0.094
2017 Frankel AE, Froehlich TW, Kim J, Coughlin LA, Xie Y, Frenkel EP, Koh AY. Metagenomic shotgun sequencing to identify specific human gut microbes associated with immune checkpoint therapy efficacy in melanoma patients. Journal of Clinical Oncology. 35: 9516-9516. DOI: 10.1200/Jco.2017.35.15_Suppl.9516  0.093
2017 Dalvi MP, Wang L, Zhong R, Kollipara RK, Park H, Bayo J, Yenerall P, Zhou Y, Timmons BC, Rodriguez-Canales J, Behrens C, Mino B, Villalobos P, Parra ER, Suraokar M, ... ... Xie Y, et al. Taxane-Platin-Resistant Lung Cancers Co-develop Hypersensitivity to JumonjiC Demethylase Inhibitors. Cell Reports. 19: 1669-1684. PMID 28538184 DOI: 10.1016/J.Celrep.2017.04.077  0.093
2021 Gao K, Li Y, Su Y, Lin Z, Yang X, Xu M, Huang Y, Chen S, Xie Y, Li Z. High uric acid promotes mitophagy through the ROS/CaMKIIδ/Parkin pathway in cardiomyocytes and . American Journal of Translational Research. 13: 8754-8765. PMID 34539992  0.093
2016 Yu R, Wang J, Xu L, Wang Y, Wang R, Zhu X, Sun X, Luo X, Xie Y, Everlyne M, Liu L. Transcriptome Profiling of Taproot Reveals Complex Regulatory Networks during Taproot Thickening in Radish (Raphanus sativus L.). Frontiers in Plant Science. 7: 1210. PMID 27597853 DOI: 10.3389/fpls.2016.01210  0.093
2010 Xie Y, Ahn C. Statistical methods for integrating multiple types of high-throughput data. Methods in Molecular Biology (Clifton, N.J.). 620: 511-29. PMID 20652519 DOI: 10.1007/978-1-60761-580-4_19  0.093
2018 Gong K, Guo G, E Gerber D, Gao B, Peyton M, Huang C, D Minna J, J Hatanpaa K, Kernstine K, Cai L, Xie Y, Zhu H, Fattah F, Zhang S, Takahashi M, et al. TNF-driven adaptive response mediates resistance to EGFR inhibition in lung cancer. The Journal of Clinical Investigation. PMID 29613856 DOI: 10.1172/Jci96148  0.093
2015 Gibbs SL, Genega E, Salemi J, Kianzad V, Goodwill HL, Xie Y, Oketokoun R, Khurd P, Kamen A, Frangioni JV. Near-Infrared Fluorescent Digital Pathology for the Automation of Disease Diagnosis and Biomarker Assessment. Molecular Imaging. 14: 7290201500005. PMID 28654346 DOI: 10.2310/7290.2015.00005  0.093
2015 Gibbs SL, Genega E, Salemi J, Kianzad V, Goodwill HL, Xie Y, Oketokoun R, Khurd P, Kamen A, Frangioni JV. Near-infrared fluorescent digital pathology for the automation of disease diagnosis and biomarker assessment. Molecular Imaging. 14. PMID 25812603 DOI: 10.2310/7290.2015.00005  0.093
2017 Dogeas E, Chen B, Xie Y, Mendell J, Augustine MM. Complementary Genome-Wide, Loss- and Gain-of-Function Screens Discover Novel Genes Associated with Platinum Resistance in Colon Adenocarcinoma Journal of the American College of Surgeons. 225: S187-S188. DOI: 10.1016/J.Jamcollsurg.2017.07.427  0.093
2020 Liu Y, Xie Y, Lin Y, Xu Q, Huang Y, Peng M, Lai W, Zheng Y. Cepharanthine as a Potential Novel Tumor-Regional Therapy in Treating Cutaneous Melanoma: Altering the Expression of Cathepsin B, Tumor Suppressor Genes and Autophagy-Related Proteins. Frontiers in Bioengineering and Biotechnology. 8: 601969. PMID 33335896 DOI: 10.3389/fbioe.2020.601969  0.092
2022 Xie Y, Zhang Y, Shi H, Wu Z, Yu X, Zhang C, Feng S. [Preparation of molecularly imprinted polymers based on covalent organic frameworks and their application to selective recognition of trace norfloxacin in milk]. SE Pu = Chinese Journal of Chromatography. 40: 1-9. PMID 34985210 DOI: 10.3724/SP.J.1123.2021.03013  0.092
2015 Xiao C, Wu Q, Xie Y, Zhang J, Tan J. Hypoglycemic effects of Grifola frondosa (Maitake) polysaccharides F2 and F3 through improvement of insulin resistance in diabetic rats. Food & Function. PMID 26311233 DOI: 10.1039/c5fo00497g  0.092
2019 Jia Y, Jiang S, Chen C, Lu G, Xie Y, Sun X, Huang L. Caffeic acid phenethyl ester attenuates nuclear factor‑κB‑mediated inflammatory responses in Müller cells and protects against retinal ganglion cell death. Molecular Medicine Reports. PMID 31059064 DOI: 10.3892/mmr.2019.10151  0.092
2018 Chen MH, Zhang WL, Chen L, Lin R, Xie Y, Fang DS, Lian YY, Jiang H. Isolation, purification and identification of two new alkaloids metabolites from marine-derived Verrucosispora sp. FIM06025. Natural Product Research. 1-7. PMID 30445864 DOI: 10.1080/14786419.2018.1509333  0.092
2015 Zhou X, Wang Y, Si J, Zhou R, Gan L, Di C, Xie Y, Zhang H. Laser controlled singlet oxygen generation in mitochondria to promote mitochondrial DNA replication in vitro. Scientific Reports. 5: 16925. PMID 26577055 DOI: 10.1038/srep16925  0.092
2023 Cai L, DeBerardinis RJ, Xiao G, Minna JD, Xie Y. Dissecting molecular, pathological, and clinical features associated with tumor neural/neuroendocrine heterogeneity. Iscience. 26: 106983. PMID 37378310 DOI: 10.1016/j.isci.2023.106983  0.092
2015 Ostapchenko VG, Chen M, Guzman MS, Xie YF, Lavine N, Fan J, Beraldo FH, Martyn AC, Belrose JC, Mori Y, MacDonald JF, Prado VF, Prado MA, Jackson MF. The Transient Receptor Potential Melastatin 2 (TRPM2) Channel Contributes to β-Amyloid Oligomer-Related Neurotoxicity and Memory Impairment. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 35: 15157-69. PMID 26558786 DOI: 10.1523/Jneurosci.4081-14.2015  0.092
2015 Wang P, Xia M, Liang O, Sun K, Cipriano AF, Schroeder T, Huinan L, Xie YH. Label-free SERS Selective Detection of Dopamine and Serotonin Using Graphene-Au Nanopyramid Heterostructure. Analytical Chemistry. PMID 26382549 DOI: 10.1021/Acs.Analchem.5B01560  0.091
2006 Xu S, Wu A, Chen H, Xie Y, Xu Y, Zhang L, Li J, Zhang D. Production of a novel recombinant Drosophila melanogaster acetylcholinesterase for detection of organophosphate and carbamate insecticide residues. Biomolecular Engineering. 24: 253-61. PMID 17222583 DOI: 10.1016/j.bioeng.2006.12.002  0.091
2021 Jia Q, Tian W, Li B, Chen W, Zhang W, Xie Y, Cheng N, Chen Q, Xiao J, Zhang Y, Yang J, Wang S. TRPV1 and TRPA1 in melanocytes synergize UV-dependent and UV-independent melanogenesis. British Journal of Pharmacology. PMID 34363226 DOI: 10.1111/bph.15643  0.091
2023 Fu D, Huang G, Xie Y, Zheng M, Feng J, Kan K, Shen J. Novel Uracil-Functionalized Poly(ionic liquid) Hydrogel: Highly Stretchable and Sensitive as a Direct Wearable Ionic Skin for Human Motion Detection. Acs Applied Materials & Interfaces. PMID 36787995 DOI: 10.1021/acsami.2c21819  0.091
2015 Nakasaki M, Hwang Y, Xie Y, Kataria S, Gund R, Hajam EY, Samuel R, George R, Danda D, M J P, Nakamura T, Shen Z, Briggs S, Varghese S, Jamora C. The matrix protein Fibulin-5 is at the interface of tissue stiffness and inflammation in fibrosis. Nature Communications. 6: 8574. PMID 26469761 DOI: 10.1038/Ncomms9574  0.091
2015 Wang T, Zhan X, Bu CH, Lyon S, Pratt D, Hildebrand S, Choi JH, Zhang Z, Zeng M, Wang KW, Turer E, Chen Z, Zhang D, Yue T, Wang Y, ... ... Xie Y, et al. Real-time resolution of point mutations that cause phenovariance in mice. Proceedings of the National Academy of Sciences of the United States of America. 112: E440-9. PMID 25605905 DOI: 10.1073/Pnas.1423216112  0.091
2024 Xie Y, Tang W, Liu H, Wang Y, Chen Y. Elevated FAPI Activity in an Adult Brodie Abscess. Clinical Nuclear Medicine. PMID 38377370 DOI: 10.1097/RLU.0000000000005096  0.091
2015 Chen J, Lei S, Xie Y, Wang M, Yang J, Ge X. Fabrication of High-performance Magnetic Lysozyme-imprinted Microsphere and Its NIR-responsive Controlled Release Property. Acs Applied Materials & Interfaces. PMID 26642106 DOI: 10.1021/acsami.5b10126  0.091
2023 Rong R, Sheng H, Jin KW, Wu F, Luo D, Wen Z, Tang C, Yang DM, Jia L, Amgad M, Cooper LAD, Xie Y, Zhan X, Wang S, Xiao G. A Deep Learning Approach for Histology-Based Nucleus Segmentation and Tumor Microenvironment Characterization. Modern Pathology : An Official Journal of the United States and Canadian Academy of Pathology, Inc. 100196. PMID 37100227 DOI: 10.1016/j.modpat.2023.100196  0.09
2015 Jiang C, Xiao J, Xie Y, Xiao Y, Wang C, Kuang X, Xu M, Li R, Zeng T, Liu S, Yu J, Zhao F, Wu Y. Evaluation of FlaB1, FlaB2, FlaB3, and Tp0463 of Treponema pallidum for serodiagnosis of syphilis. Diagnostic Microbiology and Infectious Disease. PMID 26607421 DOI: 10.1016/j.diagmicrobio.2015.10.005  0.09
2022 von Itzstein MS, Gonugunta AS, Sheffield T, Homsi J, Dowell JE, Koh AY, Raj P, Fattah F, Wang Y, Basava VS, Khan S, Park JY, Popat V, Saltarski JM, Gloria-McCutchen Y, ... ... Xie Y, et al. Association between Antibiotic Exposure and Systemic Immune Parameters in Cancer Patients Receiving Checkpoint Inhibitor Therapy. Cancers. 14. PMID 35267634 DOI: 10.3390/cancers14051327  0.09
2011 Wang S, Wang Y, Xie Y, Xiao G. A novel approach to DNA copy number data segmentation. Journal of Bioinformatics and Computational Biology. 9: 131-48. PMID 21328710 DOI: 10.1142/S0219720011005343  0.09
2022 Ning L, Cheng H, Yu F, Zhou Y, Xie Y. Construction of simple and sensitive pancreatitis related microRNA detection strategy via self-priming triggered cascade signal amplification. Analytical and Bioanalytical Chemistry. PMID 35672577 DOI: 10.1007/s00216-022-04147-8  0.089
2023 Wang S, Rong R, Yang DM, Fujimoto J, Bishop JA, Yan S, Cai L, Behrens C, Berry LD, Wilhelm C, Aisner D, Sholl L, Johnson BE, Kwiatkowski DJ, Wistuba II, ... ... Xie Y, et al. Features of tumor-microenvironment images predict targeted therapy survival benefit in patients with EGFR-mutant lung cancer. The Journal of Clinical Investigation. 133. PMID 36647832 DOI: 10.1172/JCI160330  0.089
2015 Chang F, Luo J, Wang X, Xie Y, Deng B, Hu X. Poly(vinyl pyrrolidone)-assisted hydrothermal synthesis and enhanced visible-light photocatalytic performance of oxygen-rich bismuth oxychlorides. Journal of Colloid and Interface Science. 459: 136-145. PMID 26280163 DOI: 10.1016/J.Jcis.2015.08.023  0.089
2023 Zhang H, Xie Y. Novel start codons introduce novel coding sequences in the human genomes. Scientific Reports. 13: 8141. PMID 37208378 DOI: 10.1038/s41598-023-34770-z  0.089
2018 Xie Y, Wang L, Zhang Y, Li H, Huang R. An in situ silicone–silicone interpenetrating polymer network (IPN) with higher mechanical property, higher hydrophilicity, and lower protein adsorption Journal of Materials Science. 53: 9325-9339. DOI: 10.1007/s10853-018-2146-2  0.088
2012 Allen JD, Xie Y, Chen M, Girard L, Xiao G. Comparing statistical methods for constructing large scale gene networks. Plos One. 7: e29348. PMID 22272232 DOI: 10.1371/Journal.Pone.0029348  0.088
2015 Zhou Y, Xie Y, Zhu Y, Wu J, Shang M, Chen B, Fang Q. Smith‑Magenis syndrome in monozygotic twin fetuses presenting with discordant phenotypes and uteroplacental insufficiency. Molecular Medicine Reports. PMID 26572831 DOI: 10.3892/mmr.2015.4538  0.088
2023 Kawabe N, Matsuoka K, Komeda K, Muraki N, Takaba M, Togami Y, Ito Y, Yamada M, Sunaga N, Girard L, Minna JD, Cai L, Xie Y, Tanaka I, Morise M, et al. Silencing of induces epithelial‑to‑mesenchymal transition in lung cancer cell lines with different effects on proliferation and clonogenic growth. Oncology Letters. 26: 391. PMID 37600329 DOI: 10.3892/ol.2023.13977  0.088
2015 Zhang K, Zhang J, Li X, Guo R, Ågren H, Ou Z, Ishida M, Furuta H, Xie Y. Synthesis of a Neo-Confused Octaphyrin and the Formation of Its Mononuclear Complexes. Organic Letters. PMID 26368594 DOI: 10.1021/Acs.Orglett.5B02363  0.088
2015 Qi S, Mao Y, Lv M, Sun L, Wang X, Yang H, Xie YF. Pathway fraction of bromate formation during O3 and O3/H2O2 processes in drinking water treatment. Chemosphere. 144: 2436-2442. PMID 26615492 DOI: 10.1016/j.chemosphere.2015.11.022  0.088
2016 Nie S, Li C, Xu L, Wang Y, Huang D, Muleke EM, Sun X, Xie Y, Liu L. De novo transcriptome analysis in radish (Raphanus sativus L.) and identification of critical genes involved in bolting and flowering. Bmc Genomics. 17: 389. PMID 27216755 DOI: 10.1186/s12864-016-2633-2  0.088
2017 Zhang J, Peng X, Yuan A, Xie Y, Yang Q, Xue L. Peroxisome proliferator‑activated receptor γ mediates porcine placental angiogenesis through hypoxia inducible factor‑, vascular endothelial growth factor‑ and angiopoietin‑mediated signaling. Molecular Medicine Reports. PMID 28677792 DOI: 10.3892/mmr.2017.6903  0.087
2019 Zhang M, Wang T, Sirianni R, Shaul PW, Xie Y. Identifying genes with tri-modal association with survival and tumor grade in cancer patients. Bmc Bioinformatics. 20: 13. PMID 30621577 DOI: 10.1186/s12859-018-2582-7  0.087
2016 Xie Y, Wang J, Feng Y. Characterization of Recognition Events between Proteins on a Single Molecule Level with Atomic Force Microscopy Industrial and Engineering Chemistry Research. 55: 1469-1476. DOI: 10.1021/acs.iecr.5b03922  0.087
2018 Cai L, Lin S, Girard L, Zhou Y, Yang L, Ci B, Zhou Q, Luo D, Yao B, Tang H, Allen J, Huffman K, Gazdar A, Heymach J, Wistuba I, ... ... Xie Y, et al. LCE: an open web portal to explore gene expression and clinical associations in lung cancer. Oncogene. PMID 30532070 DOI: 10.1038/S41388-018-0588-2  0.087
2016 Xiao T, Li L, Xie Y, Mao ZW, Zhou L. Synthesis of Gem-Difluorinated Fused Quinolines via Visible Light-Mediated Cascade Radical Cyclization. Organic Letters. PMID 26914630 DOI: 10.1021/acs.orglett.6b00119  0.086
2024 Lin Q, Li Z, Wang B, Zhou M, Xie Y, Wang D, Hou C, Wang R, Liu X, Sun X, Shan H, Chen Z, Wu H, Yang Y, Fei C, et al. Acoustic hologram-induced virtual in vivo enhanced waveguide (AH-VIEW). Science Advances. 10: eadl2232. PMID 38354252 DOI: 10.1126/sciadv.adl2232  0.086
2013 Zhong R, Kim MS, White MA, Xie Y, Xiao G. SbacHTS: spatial background noise correction for high-throughput RNAi screening. Bioinformatics (Oxford, England). 29: 2218-20. PMID 23814141 DOI: 10.1093/Bioinformatics/Btt358  0.086
2023 Xie Y, Zhang R, Chen ZL, Rong M, He H, Ni S, He XK, Xiao WJ, Xuan J. Photocatalytic Boryl Radicals Triggered Sequential B─N/C─N Bond Formation to Assemble Boron-Handled Pyrazoles. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2306728. PMID 38018506 DOI: 10.1002/advs.202306728  0.086
2012 Xiang H, Luo Q, Dai K, Duan W, Fan Y, Xie Y. Use of cetyltrimethylammonium bromide as a simple probe for rapid determination of emodin by resonance light scattering technique. Spectrochimica Acta. Part a, Molecular and Biomolecular Spectroscopy. 96: 874-81. PMID 22929864 DOI: 10.1016/j.saa.2012.07.093  0.086
2011 Xie Y, Xiao G, Coombes KR, Behrens C, Solis LM, Raso G, Girard L, Erickson HS, Roth J, Heymach JV, Moran C, Danenberg K, Minna JD, Wistuba II. Robust gene expression signature from formalin-fixed paraffin-embedded samples predicts prognosis of non-small-cell lung cancer patients. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 17: 5705-14. PMID 21742808 DOI: 10.1158/1078-0432.Ccr-11-0196  0.086
2007 Zheng J, Zheng X, Zhao Y, Xie Y, Yam C, Chen G, Jiang Q, Chwang AT. Publisher's Note: Maxwell’s demon and Smoluchowski’s trap door [Phys. Rev. E75, 041109 (2007)] Physical Review E. 75. DOI: 10.1103/Physreve.75.059904  0.086
2020 Lu YH, Chen MC, Liu F, Xu Z, Tian XT, Xie Y, Huang CG. Synthesis and Cytotoxic Activity of Novel C-23-Modified Asiatic Acid Derivatives. Molecules (Basel, Switzerland). 25. PMID 32823913 DOI: 10.3390/molecules25163709  0.086
2017 Tian Y, Li Y, Li J, Feng S, Li S, Mao J, Xie Y, Liu X, Dong H, Zheng W, Wang M. Bufei Yishen Granules Combined with Acupoint Sticking Therapy Suppress Inflammation in Chronic Obstructive Pulmonary Disease Rats: Via JNK/p38 Signaling Pathway. Evidence-Based Complementary and Alternative Medicine : Ecam. 2017: 1768243. PMID 29234369 DOI: 10.1155/2017/1768243  0.085
2019 Xie Y, Xu M, Deng M, Li Z, Wang P, Ren S, Guo Y, Ma X, Fan J, Billiar TR, Xie W. Activation of Pregnane X Receptor Sensitizes Mice to Hemorrhagic Shock Induced Liver Injury. Hepatology (Baltimore, Md.). PMID 31038762 DOI: 10.1002/hep.30691  0.085
2012 Ma S, Dai Y, Huang J, Xie Y. Identification of Breast Cancer Prognosis Markers via Integrative Analysis. Computational Statistics & Data Analysis. 56: 2718-2728. PMID 22773869 DOI: 10.1016/J.Csda.2012.02.017  0.085
2014 Wang M, Li J, Li S, Xie Y. Effects of comprehensive therapy based on traditional Chinese medicine patterns on older patients with chronic obstructive pulmonary disease: a subgroup analysis from a four-center, randomized, controlled study. Frontiers of Medicine. 8: 368-75. PMID 25204290 DOI: 10.1007/s11684-014-0360-0  0.085
2023 Wang S, Rong R, Gu Z, Fujimoto J, Zhan X, Xie Y, Xiao G. Unsupervised domain adaptation for nuclei segmentation: Adapting from hematoxylin & eosin stained slides to immunohistochemistry stained slides using a curriculum approach. Computer Methods and Programs in Biomedicine. 241: 107768. PMID 37619429 DOI: 10.1016/j.cmpb.2023.107768  0.085
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2018 Huang Z, Yang M, You H, Xie Y. Concurrent Determination and Separation of Inorganic Cations and Anions in Microchip Electrophoresis with Precisely Controlled High-voltage. Electrophoresis. PMID 29676805 DOI: 10.1002/elps.201800077  0.074
2022 Wang B, Xie Y, He X, Jiang J, Xiao J, Chen Z. Transient triplet differential-based photoacoustic lifetime imaging with an automatic interleaved data acquisition method for improved scanning speed and stability. Optics Express. 30: 39129-39141. PMID 36258460 DOI: 10.1364/OE.472132  0.074
2015 Wu J, Xi Y, McCandless GT, Xie Y, Menon R, Patel Y, Yang DJ, Iacono ST, Novak BM. Synthesis and Characterization of Partially Fluorinated Polybenzoxazine Resins Utilizing Octafluorocyclopentene as a Versatile Building Block Macromolecules. 48: 6087-6095. DOI: 10.1021/Acs.Macromol.5B01014  0.074
2010 Xiang H, Dai K, Luo Q, Duan W, Xie Y. A sensitive resveratrol assay with a simple probe methylene blue by resonance light scattering technique. Spectrochimica Acta. Part a, Molecular and Biomolecular Spectroscopy. 78: 307-12. PMID 21035382 DOI: 10.1016/j.saa.2010.10.011  0.074
2017 Yi F, Huang J, Yang L, Xie Y, Xiao G. Automatic extraction of cell nuclei from H&E-stained histopathological images. Journal of Medical Imaging (Bellingham, Wash.). 4: 027502. PMID 28653017 DOI: 10.1117/1.Jmi.4.2.027502  0.074
2020 Silva Barbosa AC, Zhou D, Xie Y, Choi YJ, Tung HC, Chen X, Xu M, Gibbs RB, Poloyac SM, Liu S, Yu Y, Luo J, Liu Y, Xie W. Inhibition of Estrogen Sulfotransferase (/EST) Ameliorates Ischemic Acute Kidney Injury in Mice. Journal of the American Society of Nephrology : Jasn. PMID 32424001 DOI: 10.1681/Asn.2019080767  0.074
2021 Kim J, Jiang S, Wang Y, Xiao G, Xie Y, Liu DJ, Li Q, Koh A, Zhan X. MetaPrism: A Versatile Toolkit for Joint Taxa/Gene Analysis of Metagenomic Sequencing Data. G3 (Bethesda, Md.). PMID 33713107 DOI: 10.1093/g3journal/jkab046  0.074
2015 Guan AY, Liu CL, Sun XF, Xie Y, Wang MA. Discovery of pyridine-based agrochemicals by using Intermediate Derivatization Methods. Bioorganic & Medicinal Chemistry. PMID 26481150 DOI: 10.1016/j.bmc.2015.09.031  0.074
2014 Gu J, Xie Y, Schaefer HF. Benchmarking the Electron Affinity of Uracil. Journal of Chemical Theory and Computation. 10: 609-12. PMID 26580037 DOI: 10.1021/ct400958d  0.074
2024 Yang J, Tao Q, Li J, Xie Y, Tang C, Huang X, Chen Y, Zeng C. Exploring the Molecular Targets and Therapeutic Potential of Coptisine in Colon Cancer: A Network Pharmacology Approach. Current Medicinal Chemistry. PMID 38231070 DOI: 10.2174/0109298673262553231227075800  0.074
2016 Luo X, Zang X, Yang L, Huang J, Liang F, Rodriguez Canales J, Wistuba II, Gazdar A, Xie Y, Xiao G. Comprehensive Computational Pathological Image Analysis Predicts Lung Cancer Prognosis. Journal of Thoracic Oncology : Official Publication of the International Association For the Study of Lung Cancer. PMID 27826035 DOI: 10.1016/J.Jtho.2016.10.017  0.074
2018 Xie Y, Hu D, Zhong C, Liu KF, Fang E, Zhang YJ, Zhou C, Tian LW. Anti-inflammatory furostanol saponins from the rhizomes of Smilax china L. Steroids. PMID 30273696 DOI: 10.1016/j.steroids.2018.09.011  0.074
2020 Khan S, von Itzstein MS, Lu R, Bermas BL, Karp DR, Khan SA, Fattah FJ, Park JY, Saltarski JM, Gloria-McCutchen Y, Xie Y, Li QZ, Wakeland EK, Gerber DE. Late-Onset Immunotherapy Toxicity and Delayed Autoantibody Changes: Checkpoint Inhibitor-Induced Raynaud's-Like Phenomenon. The Oncologist. PMID 32167195 DOI: 10.1634/Theoncologist.2019-0666  0.073
2013 Liu J, Huang J, Xie Y, Ma S. Sparse group penalized integrative analysis of multiple cancer prognosis datasets. Genetics Research. 95: 68-77. PMID 23938111 DOI: 10.1017/S0016672313000086  0.073
2019 Luo X, Yin S, Yang L, Fujimoto J, Yang Y, Moran C, Kalhor N, Weissferdt A, Xie Y, Gazdar A, Minna J, Wistuba II, Mao Y, Xiao G. Development and Validation of a Pathology Image Analysis-based Predictive Model for Lung Adenocarcinoma Prognosis - A Multi-cohort Study. Scientific Reports. 9: 6886. PMID 31053738 DOI: 10.1038/S41598-019-42845-Z  0.073
2015 Xie Y, Zhang L, Zhu Y, Liu L, Guo H. Photogalvanic effect in monolayer black phosphorus. Nanotechnology. 26: 455202. PMID 26486805 DOI: 10.1088/0957-4484/26/45/455202  0.073
2022 Xie Y, Zhang Y, Zhu T, Ma J, Duan C, Yang L, Wang T, Zhuang R, Bian K, Lu L. CD226 Deficiency Alleviates Murine Allergic Rhinitis by Suppressing Group 2 Innate Lymphoid Cell Responses. Mediators of Inflammation. 2022: 1756395. PMID 35846105 DOI: 10.1155/2022/1756395  0.073
2021 Zhang Y, Xie Y, Shi H, Wu Z, Zhang C, Feng S. Facile Way to Prepare a Porous Molecular Imprinting Lock for Specifically Recognizing Oxytetracyclin Based on Coordination. Analytical Chemistry. PMID 33650848 DOI: 10.1021/acs.analchem.0c04959  0.073
2015 Liang L, Lei F, Gao S, Sun Y, Jiao X, Wu J, Qamar S, Xie Y. Single Unit Cell Bismuth Tungstate Layers Realizing Robust Solar CO2 Reduction to Methanol. Angewandte Chemie (International Ed. in English). PMID 26419397 DOI: 10.1002/Anie.201506966  0.073
2023 Xie Y, Wang Y, Pei W, Chen Y. Theranostic in GLP-1R molecular imaging: challenges and emerging opportunities. Frontiers in Molecular Biosciences. 10: 1210347. PMID 37780209 DOI: 10.3389/fmolb.2023.1210347  0.073
2017 Hou Y, Xia Y, Pan Y, Tang S, Sun X, Xie Y, Guo H, Wei J. Influences of mesoporous zinc-calcium silicate on water absorption, degradability, antibacterial efficacy, hemostatic performances and cell viability to microporous starch based hemostat. Materials Science & Engineering. C, Materials For Biological Applications. 76: 340-349. PMID 28482536 DOI: 10.1016/j.msec.2017.03.094  0.073
2014 Zhou X, Cao L, Jiang C, Xie Y, Cheng X, Krausz KW, Qi Y, Sun L, Shah YM, Gonzalez FJ, Wang G, Hao H. PPARα-UGT axis activation represses intestinal FXR-FGF15 feedback signalling and exacerbates experimental colitis. Nature Communications. 5: 4573. PMID 25183423 DOI: 10.1038/Ncomms5573  0.073
2015 Li C, Yang M, Wang C, Wang C, Fan J, Chen Z, Wei X, Zhang G, Bai Y, Zhu X, Xie Y, Li M. Preoperative factors predicting intraoperative blood loss in female patients with adolescent idiopathic scoliosis. Medicine. 94: e359. PMID 25569653 DOI: 10.1097/MD.0000000000000359  0.073
2015 Ablikim M, Achasov MN, Ai XC, Albayrak O, Albrecht M, Ambrose DJ, Amoroso A, An FF, An Q, Bai JZ, Ferroli RB, Ban Y, Bennett DW, Bennett JV, Bertani M, ... Xie YG, et al. Observation of a Neutral Charmoniumlike State Z_{c}(4025)^{0} in e^{+}e^{-}→(D^{*}D[over ¯]^{*})^{0}π^{0}. Physical Review Letters. 115: 182002. PMID 26565461 DOI: 10.1103/Physrevlett.115.182002  0.073
2015 Nie S, Xu L, Wang Y, Huang D, Muleke EM, Sun X, Wang R, Xie Y, Gong Y, Liu L. Identification of bolting-related microRNAs and their targets reveals complex miRNA-mediated flowering-time regulatory networks in radish (Raphanus sativus L.). Scientific Reports. 5: 14034. PMID 26369897 DOI: 10.1038/srep14034  0.072
2015 Xie Y, Chi HW, Guan AY, Liu CL, Ma HJ, Cui DL. Synthesis and evaluation of substituted 3-(pyridin-2-yl)benzenesulfonamide derivatives as potent herbicidal agents. Bioorganic & Medicinal Chemistry. PMID 26385445 DOI: 10.1016/j.bmc.2015.08.037  0.072
2020 Li X, Aishan B, Yang Y, Xie Y, Dilimulati D, Tuerxun P. CCL6 aggravates hypoxia-reoxygenation-induced apoptosis in H9c2 cells through enhancing the expression of IGF2-AS. Journal of Cardiovascular Pharmacology. PMID 32833905 DOI: 10.1097/FJC.0000000000000905  0.072
2015 Chang F, Xie Y, Chen J, Luo J, Li C, Hu X, Xu B. Template-Free Synthesis and Enhanced Photocatalytic Performance of Uniform BiOCI Flower-Like Microspheres. Journal of Nanoscience and Nanotechnology. 15: 1421-6. PMID 26353666 DOI: 10.1166/Jnn.2015.9043  0.072
2013 Xia Y, Zhou P, Cheng X, Xie Y, Liang C, Li C, Xu S. Selective laser sintering fabrication of nano-hydroxyapatite/poly-ε-caprolactone scaffolds for bone tissue engineering applications. International Journal of Nanomedicine. 8: 4197-213. PMID 24204147 DOI: 10.2147/IJN.S50685  0.072
2021 Xie Y, Yu L, Fu Y, Sun H, Wang J. Evaluating effect of metallic ions on aggregation behavior of β-amyloid peptides by atomic force microscope and surface-enhanced Raman Scattering. Biomedical Engineering Online. 20: 132. PMID 34969380 DOI: 10.1186/s12938-021-00972-7  0.072
2024 Albadari N, Xie Y, Li W. Deciphering treatment resistance in metastatic colorectal cancer: roles of drug transports, EGFR mutations, and HGF/c-MET signaling. Frontiers in Pharmacology. 14: 1340401. PMID 38269272 DOI: 10.3389/fphar.2023.1340401  0.072
2020 Suresh S, Chen B, Zhu J, Golden RJ, Lu C, Evers BM, Novaresi N, Smith B, Zhan X, Schmid V, Jun S, Karacz CM, Peyton M, Zhong L, Wen Z, ... ... Xie Y, et al. eIF5B drives integrated stress response-dependent translation of PD-L1 in lung cancer. Nature Cancer. 1: 533-545. PMID 32984844 DOI: 10.1038/S43018-020-0056-0  0.071
2015 Xie Y, Zhi X, Su H, Wang K, Yan Z, He N, Zhang J, Chen D, Cui D. A Novel Electrochemical Microfluidic Chip Combined with Multiple Biomarkers for Early Diagnosis of Gastric Cancer. Nanoscale Research Letters. 10: 477. PMID 26659608 DOI: 10.1186/s11671-015-1153-3  0.071
2015 Dautriche CN, Tian Y, Xie Y, Sharfstein ST. A Closer Look at Schlemm's Canal Cell Physiology: Implications for Biomimetics. Journal of Functional Biomaterials. 6: 963-85. PMID 26402712 DOI: 10.3390/Jfb6030963  0.071
2015 Xie Y, Wang X, Silander JA. Deciduous forest responses to temperature, precipitation, and drought imply complex climate change impacts. Proceedings of the National Academy of Sciences of the United States of America. PMID 26483475 DOI: 10.1073/Pnas.1509991112  0.071
2022 Peng C, Jian X, Xie Y, Li L, Ouyang J, Tang L, Zhang X, Su J, Zhao S, Liu H, Yin M, Wu D, Wan M, Xie L, Chen X. Genomic alterations of dermatofibrosarcoma protuberans revealed by whole-genome sequencing. The British Journal of Dermatology. PMID 35441365 DOI: 10.1111/bjd.20976  0.071
2015 Li Z, Xie Y, Zhong T, Zhang X, Dang Y, Gan T, Chen G. Expression and clinical contribution of MRGD mRNA in non-small cell lung cancers. Journal of B.U.On. : Official Journal of the Balkan Union of Oncology. 20: 1101-6. PMID 26416063  0.071
2023 Wang S, Rong R, Zhou Q, Yang DM, Zhang X, Zhan X, Bishop J, Chi Z, Wilhelm CJ, Zhang S, Pickering CR, Kris MG, Minna J, Xie Y, Xiao G. Deep learning of cell spatial organizations identifies clinically relevant insights in tissue images. Nature Communications. 14: 7872. PMID 38081823 DOI: 10.1038/s41467-023-43172-8  0.071
2005 Li L, Xie Y, El-Sayed WM, Szakacs JG, Franklin MR, Roberts JC. Chemopreventive activity of selenocysteine prodrugs against tobacco-derived nitrosamine (NNK) induced lung tumors in the A/J mouse. Journal of Biochemical and Molecular Toxicology. 19: 396-405. PMID 16421895 DOI: 10.1002/jbt.20105  0.071
2015 Que Y, Xie Y, Li T, Yu C, Tu S, Yao C. An N-Heterocyclic Carbene-Catalyzed Oxidative γ-Aminoalkylation of Saturated Carboxylic Acids through in Situ Activation Strategy: Access to δ-Lactam. Organic Letters. PMID 26646554 DOI: 10.1021/acs.orglett.5b03223  0.071
2017 Zhou X, Updegraff B, Guo Y, Peyton M, Girard L, Larsen J, Xie X, Zhou Y, Hwang T, Xie Y, Rodriguez-Canales J, Villalobos P, Behrens C, Wistuba I, Minna J, et al. Dissecting the Role of PCDH7, an Oncogenic Cell Surface Receptor, in Non–Small Cell Lung Cancer Journal of Thoracic Oncology. 12: S1542. DOI: 10.1016/J.Jtho.2017.06.044  0.071
2015 Tang H, Sebti S, Titone R, Zhou Y, Isidoro C, Ross TS, Hibshoosh H, Xiao G, Packer M, Xie Y, Levine B. Decreased BECN1 mRNA Expression in Human Breast Cancer is Associated with Estrogen Receptor-Negative Subtypes and Poor Prognosis. Ebiomedicine. 2: 255-263. PMID 25825707 DOI: 10.1016/J.Ebiom.2015.01.008  0.071
2005 Martinez-Vaz BM, Xie Y, Pan W, Khodursky AB. Genome-wide localization of mobile elements: experimental, statistical and biological considerations. Bmc Genomics. 6: 81. PMID 15929794 DOI: 10.1186/1471-2164-6-81  0.071
2022 Hsiehchen D, Naqash AR, Espinoza M, Von Itzstein MS, Cortellini A, Ricciuti B, Owen DH, Laharwal M, Toi Y, Burke M, Xie Y, Gerber DE. Association between immune-related adverse event timing and treatment outcomes. Oncoimmunology. 11: 2017162. PMID 35003896 DOI: 10.1080/2162402X.2021.2017162  0.07
2015 Xie Y, Tang Y, Wu W, Wang Y, Liu J, Li X, Tian H, Zhu WH. Porphyrin Cosensitization for a Photovoltaic Efficiency of 11.5%: a Record for Non-Ruthenium Solar Cells Based on Iodine Electrolyte. Journal of the American Chemical Society. PMID 26492075 DOI: 10.1021/Jacs.5B09665  0.07
2022 Wang Y, Song B, Wang S, Chen M, Xie Y, Xiao G, Wang L, Wang T. Sprod for de-noising spatially resolved transcriptomics data based on position and image information. Nature Methods. 19: 950-958. PMID 35927477 DOI: 10.1038/s41592-022-01560-w  0.07
2015 Cao H, Xie Y, Chen X. Type 2 diabetes diminishes the benefits of dietary antioxidants: Evidence from the different free radical scavenging potential. Food Chemistry. 186: 106-12. PMID 25976798 DOI: 10.1016/j.foodchem.2014.06.027  0.07
2013 Yan J, Cai J, Gates S, Xie Y, Lee SC, Gerber DE. Prevalence and predictors of online patient access to electronic medical records among patients with cancer. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 31: 35. PMID 28136279 DOI: 10.1200/jco.2013.31.31_suppl.35  0.07
2011 Xiang H, Xie Y, Huang J. Study on the interaction of DNA with resveratrol by resonance light scattering technique and its analytical application Journal of Analytical Chemistry. 66: 618-622. DOI: 10.1134/S1061934811040071  0.07
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2023 Yang Y, Xie Y, Zhang F. Second near-infrared window fluorescence nanoprobes for deep-tissue in vivo multiplexed bioimaging. Advanced Drug Delivery Reviews. 193: 114697. PMID 36641080 DOI: 10.1016/j.addr.2023.114697  0.07
2015 Unser AM, Mooney B, Corr DT, Tseng YH, Xie Y. 3D brown adipogenesis to create "Brown-Fat-in-Microstrands". Biomaterials. 75: 123-134. PMID 26496384 DOI: 10.1016/J.Biomaterials.2015.10.017  0.069
2010 Vu AT, Baba T, Chen X, Le TA, Kinoshita H, Xie Y, Kamijo S, Hiramatsu K, Ikeda S, Ogawa H, Okumura K, Takai T. Staphylococcus aureus membrane and diacylated lipopeptide induce thymic stromal lymphopoietin in keratinocytes through the Toll-like receptor 2-Toll-like receptor 6 pathway. The Journal of Allergy and Clinical Immunology. 126: 985-93, 993.e1-3. PMID 21050945 DOI: 10.1016/j.jaci.2010.09.002  0.069
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2016 Zhang W, Xie Y, Xu L, Wang Y, Zhu X, Wang R, Zhang Y, Muleke EM, Liu L. Identification of microRNAs and Their Target Genes Explores miRNA-Mediated Regulatory Network of Cytoplasmic Male Sterility Occurrence during Anther Development in Radish (Raphanus sativus L.). Frontiers in Plant Science. 7: 1054. PMID 27499756 DOI: 10.3389/fpls.2016.01054  0.067
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