Jefferson D. Knight, Ph.D. - Publications

2010- Chemistry CU Denver 
Protein-Lipid Interactions, Structural Biology

32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Gupta GD, Coyaud É, Gonçalves J, Mojarad BA, Liu Y, Wu Q, Gheiratmand L, Comartin D, Tkach JM, Cheung SW, Bashkurov M, Hasegan M, Knight JD, Lin ZY, Schueler M, et al. A Dynamic Protein Interaction Landscape of the Human Centrosome-Cilium Interface. Cell. 163: 1484-99. PMID 26638075 DOI: 10.1016/j.cell.2015.10.065  0.32
2015 Knight JD. Description of two new species of Laubuka (Teleostei: Cyprinidae) from River Cauvery, southern Iandia. Zootaxa. 4000: 518-30. PMID 26623743 DOI: 10.11646/zootaxa.4000.5.2  1
2015 Wang J, Tucholska M, Knight JD, Lambert JP, Tate S, Larsen B, Gingras AC, Bandeira N. MSPLIT-DIA: sensitive peptide identification for data-independent acquisition. Nature Methods. PMID 26550773 DOI: 10.1038/nmeth.3655  0.32
2015 Chon NL, Osterberg JR, Henderson J, Khan HM, Reuter N, Knight JD, Lin H. Membrane Docking of the Synaptotagmin 7 C2A Domain: Computation Reveals Interplay between Electrostatic and Hydrophobic Contributions. Biochemistry. 54: 5696-711. PMID 26333120 DOI: 10.1021/acs.biochem.5b00422  0.52
2015 Osterberg JR, Chon NL, Boo A, Maynard FA, Lin H, Knight JD. Membrane Docking of the Synaptotagmin 7 C2A Domain: Electron Paramagnetic Resonance Measurements Show Contributions from Two Membrane Binding Loops. Biochemistry. 54: 5684-95. PMID 26322740 DOI: 10.1021/acs.biochem.5b00421  0.52
2015 Knight JD, Rai A, D'souza RK, Vijaykrishnan B. Barilius ardens (Teleostei: Cyprinidae), a new species from the Western Ghats, India, with redescription of B. malabaricus and B. canarensis. Zootaxa. 3926: 396-412. PMID 25781791  0.68
2015 Lant B, Yu B, Goudreault M, Holmyard D, Knight JD, Xu P, Zhao L, Chin K, Wallace E, Zhen M, Gingras AC, Derry WB. CCM-3/STRIPAK promotes seamless tube extension through endocytic recycling. Nature Communications. 6: 6449. PMID 25743393 DOI: 10.1038/ncomms7449  0.32
2015 Knight JD, Liu G, Zhang JP, Pasculescu A, Choi H, Gingras AC. A web-tool for visualizing quantitative protein-protein interaction data. Proteomics. 15: 1432-6. PMID 25422071 DOI: 10.1002/pmic.201400429  0.32
2015 Lambert JP, Tucholska M, Go C, Knight JD, Gingras AC. Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes. Journal of Proteomics. 118: 81-94. PMID 25281560 DOI: 10.1016/j.jprot.2014.09.011  0.32
2015 Knight JDM, Rai A, D'Souza RKP, Vijaykrishnan B. Barilius ardens (Teleostei: Cyprinidae), a new species from the Western Ghats, India, with redescription of B. malabaricus and B. canarensis Zootaxa. 3926: 396-412. DOI: 10.11646/zootaxa.3926.3.5  1
2014 Knight JD, Rai A, D'souza RK. A further note on the identity of Barbus mussullah Sykes (Teleostei: Cyprinidae)  . Zootaxa. 3821: 280-4. PMID 24989742  0.68
2014 Ziemba BP, Li J, Landgraf KE, Knight JD, Voth GA, Falke JJ. Single-molecule studies reveal a hidden key step in the activation mechanism of membrane-bound protein kinase C-α. Biochemistry. 53: 1697-713. PMID 24559055 DOI: 10.1021/bi4016082  0.52
2014 Turowec JP, Zukowski SA, Knight JD, Smalley DM, Graves LM, Johnson GL, Li SS, Lajoie GA, Litchfield DW. An unbiased proteomic screen reveals caspase cleavage is positively and negatively regulated by substrate phosphorylation. Molecular & Cellular Proteomics : McP. 13: 1184-97. PMID 24556848 DOI: 10.1074/mcp.M113.037374  0.32
2014 Knight JDM, Rai A, D'Souza RKP. A further note on the identity of Barbus mussullah Sykes (Teleostei: Cyprinidae) Zootaxa. 3821: 280-284. DOI: 10.11646/zootaxa.3821.2.8  1
2013 Knight JD, Rai A, D'souza RK. On the identities of Barbus mussullah Sykes and Cyprinus curmuca Hamilton with notes on the status of Gobio canarensis Jerdon (Teleostei: Cyprinidae). Zootaxa. 3750: 201-15. PMID 25113692 DOI: 10.11646/zootaxa.3750.3.1  1
2013 Couzens AL, Knight JD, Kean MJ, Teo G, Weiss A, Dunham WH, Lin ZY, Bagshaw RD, Sicheri F, Pawson T, Wrana JL, Choi H, Gingras AC. Protein interaction network of the mammalian Hippo pathway reveals mechanisms of kinase-phosphatase interactions. Science Signaling. 6: rs15. PMID 24255178 DOI: 10.1126/scisignal.2004712  0.32
2013 Yamamoto TM, Cook JM, Kotter CV, Khat T, Silva KD, Ferreyros M, Holt JW, Knight JD, Charlesworth A. Zar1 represses translation in Xenopus oocytes and binds to the TCS in maternal mRNAs with different characteristics than Zar2. Biochimica Et Biophysica Acta. 1829: 1034-46. PMID 23827238 DOI: 10.1016/j.bbagrm.2013.06.001  0.52
2013 Knight JD, Pawson T, Gingras AC. Profiling the kinome: current capabilities and future challenges. Journal of Proteomics. 81: 43-55. PMID 23099349 DOI: 10.1016/j.jprot.2012.10.015  0.32
2012 Brandt DS, Coffman MD, Falke JJ, Knight JD. Hydrophobic contributions to the membrane docking of synaptotagmin 7 C2A domain: mechanistic contrast between isoforms 1 and 7. Biochemistry. 51: 7654-64. PMID 22966849 DOI: 10.1021/bi3007115  0.52
2012 Costa B, Kean MJ, Ast V, Knight JD, Mett A, Levy Z, Ceccarelli DF, Badillo BG, Eils R, König R, Gingras AC, Fainzilber M. STK25 protein mediates TrkA and CCM2 protein-dependent death in pediatric tumor cells of neural origin. The Journal of Biological Chemistry. 287: 29285-9. PMID 22782892 DOI: 10.1074/jbc.C112.345397  0.32
2012 Knight JD, Tian R, Lee RE, Wang F, Beauvais A, Zou H, Megeney LA, Gingras AC, Pawson T, Figeys D, Kothary R. A novel whole-cell lysate kinase assay identifies substrates of the p38 MAPK in differentiating myoblasts. Skeletal Muscle. 2: 5. PMID 22394512 DOI: 10.1186/2044-5040-2-5  0.32
2012 Ziemba BP, Knight JD, Falke JJ. Assembly of membrane-bound protein complexes: detection and analysis by single molecule diffusion. Biochemistry. 51: 1638-47. PMID 22263647 DOI: 10.1021/bi201743a  0.52
2011 Knight JD, Kothary R. The myogenic kinome: protein kinases critical to mammalian skeletal myogenesis. Skeletal Muscle. 1: 29. PMID 21902831 DOI: 10.1186/2044-5040-1-29  0.32
2011 Fukuda K, Knight JD, Piszczek G, Kothary R, Qin J. Biochemical, proteomic, structural, and thermodynamic characterizations of integrin-linked kinase (ILK): cross-validation of the pseudokinase. The Journal of Biological Chemistry. 286: 21886-95. PMID 21524996 DOI: 10.1074/jbc.M111.240093  0.32
2010 Knight JD, Lerner MG, Marcano-Velázquez JG, Pastor RW, Falke JJ. Single molecule diffusion of membrane-bound proteins: window into lipid contacts and bilayer dynamics. Biophysical Journal. 99: 2879-87. PMID 21044585 DOI: 10.1016/j.bpj.2010.08.046  0.52
2009 Knight JD, Hamelberg D, McCammon JA, Kothary R. The role of conserved water molecules in the catalytic domain of protein kinases. Proteins. 76: 527-35. PMID 19425109 DOI: 10.1002/prot.22451  0.32
2009 Knight JD, Falke JJ. Single-molecule fluorescence studies of a PH domain: new insights into the membrane docking reaction. Biophysical Journal. 96: 566-82. PMID 19167305 DOI: 10.1016/j.bpj.2008.10.020  0.52
2008 Knight JD, Williamson JA, Miranker AD. Interaction of membrane-bound islet amyloid polypeptide with soluble and crystalline insulin. Protein Science : a Publication of the Protein Society. 17: 1850-6. PMID 18765820 DOI: 10.1110/ps.036350.108  0.52
2007 Knight JD, Qian B, Baker D, Kothary R. Conservation, variability and the modeling of active protein kinases. Plos One. 2: e982. PMID 17912359 DOI: 10.1371/journal.pone.0000982  0.32
2006 Knight JD, Hebda JA, Miranker AD. Conserved and cooperative assembly of membrane-bound alpha-helical states of islet amyloid polypeptide. Biochemistry. 45: 9496-508. PMID 16878984 DOI: 10.1021/bi060579z  0.52
2004 Knight JD, Miranker AD. Phospholipid catalysis of diabetic amyloid assembly. Journal of Molecular Biology. 341: 1175-87. PMID 15321714 DOI: 10.1016/j.jmb.2004.06.086  0.52
2002 Eakin CM, Knight JD, Morgan CJ, Gelfand MA, Miranker AD. Formation of a copper specific binding site in non-native states of beta-2-microglobulin. Biochemistry. 41: 10646-56. PMID 12186550 DOI: 10.1021/bi025944a  0.52
Show low-probability matches.