Vikas Nanda, Ph.D. - Publications

Affiliations: 
Johns Hopkins University, Baltimore, MD 
 Biochemistry and Molecular Biology Rutgers University, New Brunswick, NJ, United States 
Area:
dynamic structure and function of proteins, nucleic acids, glyco-conjugates, and membranes
Website:
https://cabm.rutgers.edu/faculty_and_research/nanda.php

56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Nanda V, Senn S, Pike DH, Rodriguez-Granillo A, Hansen W, Khare SD, Noy D. Structural principles for computational and de novo design of 4Fe-4S metalloproteins. Biochimica Et Biophysica Acta. PMID 26449207 DOI: 10.1016/j.bbabio.2015.10.001  1
2015 Parmar AS, Xu F, Pike DH, Belure SV, Hasan NF, Drzewiecki KE, Shreiber DI, Nanda V. Metal Stabilization of Collagen and de Novo Designed Mimetic Peptides. Biochemistry. 54: 4987-97. PMID 26225466 DOI: 10.1021/acs.biochem.5b00502  1
2015 Stapleton JA, Whitehead TA, Nanda V. Computational redesign of the lipid-facing surface of the outer membrane protein OmpA. Proceedings of the National Academy of Sciences of the United States of America. 112: 9632-7. PMID 26199411 DOI: 10.1073/pnas.1501836112  1
2015 Dass N, Kale JR, Nanda V. Trade Credit, Relationship-specific Investment, and Product Market Power Review of Finance. 19: 1867-1923. DOI: 10.1093/rof/rfu038  0.32
2014 McGuinness K, Khan IJ, Nanda V. Morphological diversity and polymorphism of self-assembling collagen peptides controlled by length of hydrophobic domains. Acs Nano. 8: 12514-23. PMID 25390880 DOI: 10.1021/nn505369d  1
2014 Parmar AS, Pike D, Nanda V. Computational design of metalloproteins. Methods in Molecular Biology (Clifton, N.J.). 1216: 233-49. PMID 25213419 DOI: 10.1007/978-1-4939-1486-9_12  1
2014 Drzewiecki KE, Parmar AS, Gaudet ID, Branch JR, Pike DH, Nanda V, Shreiber DI. Methacrylation induces rapid, temperature-dependent, reversible self-assembly of type-I collagen. Langmuir : the Acs Journal of Surfaces and Colloids. 30: 11204-11. PMID 25208340 DOI: 10.1021/la502418s  1
2014 Huang L, Pike D, Sleat DE, Nanda V, Lobel P. Potential pitfalls and solutions for use of fluorescent fusion proteins to study the lysosome. Plos One. 9: e88893. PMID 24586430 DOI: 10.1371/journal.pone.0088893  1
2014 Parmar AS, Zahid S, Belure SV, Young R, Hasan N, Nanda V. Design of net-charged abc-type collagen heterotrimers. Journal of Structural Biology. 185: 163-7. PMID 23603270 DOI: 10.1016/j.jsb.2013.04.006  1
2014 Gopalan R, Nanda V, Seru A. Internal capital market and dividend policies: Evidence from business groups Review of Financial Studies. 27: 1102-1142. DOI: 10.1093/rfs/hhu004  0.32
2014 Dass N, Kini O, Nanda V, Onal B, Wang J. Board expertise: Do directors from related industries help bridge the information gap? Review of Financial Studies. 27: 1533-1592. DOI: 10.1093/rfs/hht071  0.32
2013 Culik RM, Annavarapu S, Nanda V, Gai F. Using D-Amino Acids to Delineate the Mechanism of Protein Folding: Application to Trp-cage. Chemical Physics. 422. PMID 24307748 DOI: 10.1016/j.chemphys.2013.01.021  1
2013 Xu F, Khan IJ, McGuinness K, Parmar AS, Silva T, Murthy NS, Nanda V. Self-assembly of left- and right-handed molecular screws. Journal of the American Chemical Society. 135: 18762-5. PMID 24283407 DOI: 10.1021/ja4106545  1
2013 Nanda V, Cristian L, Toptygin D, Brand L, Degrado WF. Nanosecond Dynamics of InfluenzaA/M2TM and an Amantadine Resistant Mutant Probed by Time-Dependent Red Shifts of a Native Tryptophan. Chemical Physics. 422. PMID 24273370 DOI: 10.1016/j.chemphys.2012.12.018  1
2013 Nanda V, Hsieh D, Davis A. Prediction and design of outer membrane protein-protein interactions. Methods in Molecular Biology (Clifton, N.J.). 1063: 183-96. PMID 23975778 DOI: 10.1007/978-1-62703-583-5_10  1
2013 Khan IJ, Di R, Patel P, Nanda V. Evaluating pH-induced gastrointestinal aggregation of Arachis hypogaea 1 fragments as potential components of peanut allergy. Journal of Agricultural and Food Chemistry. 61: 8430-5. PMID 23926999 DOI: 10.1021/jf401701t  1
2013 Kim JD, Yee N, Nanda V, Falkowski PG. Anoxic photochemical oxidation of siderite generates molecular hydrogen and iron oxides. Proceedings of the National Academy of Sciences of the United States of America. 110: 10073-7. PMID 23733945 DOI: 10.1073/pnas.1308958110  1
2013 Drzewiecki K, Gaudet I, Pike D, Branch J, Nanda V, Shreiber D. Temperature dependent reversible self assembly of methacrylated collagen gels Asme 2013 Summer Bioengineering Conference, Sbc 2013. 1. DOI: 10.1115/SBC2013-14705  1
2013 Dass N, Nanda V, Wang Q. Allocation of decision rights and the investment strategy of mutual funds Journal of Financial Economics. 110: 254-277. DOI: 10.1016/j.jfineco.2013.06.004  0.32
2012 Grzyb J, Xu F, Nanda V, Luczkowska R, Reijerse E, Lubitz W, Noy D. Empirical and computational design of iron-sulfur cluster proteins. Biochimica Et Biophysica Acta. 1817: 1256-62. PMID 22342202 DOI: 10.1016/j.bbabio.2012.02.001  1
2012 Xu F, Li J, Jain V, Tu RS, Huang Q, Nanda V. Compositional control of higher order assembly using synthetic collagen peptides. Journal of the American Chemical Society. 134: 47-50. PMID 22171825 DOI: 10.1021/ja2077894  1
2012 Hsieh D, Davis A, Nanda V. A knowledge-based potential highlights unique features of membrane α-helical and β-barrel protein insertion and folding. Protein Science : a Publication of the Protein Society. 21: 50-62. PMID 22031179 DOI: 10.1002/pro.758  1
2012 Burch TR, Nanda V, Silveri S. Do institutions prefer high-value acquirers? An analysis of trading in stock-financed acquisitions Journal of Financial Research. 35: 211-241. DOI: 10.1111/j.1475-6803.2012.01315.x  0.32
2012 Aragon GO, Nanda V. Tournament behavior in hedge funds: High-water marks, fund liquidation, and managerial stake Review of Financial Studies. 25: 937-974. DOI: 10.1093/rfs/hhr111  0.32
2012 Burch TR, Nanda V, Silveri S. Taking stock or cashing in? Shareholder style preferences, premiums and the method of payment Journal of Empirical Finance. 19: 558-582. DOI: 10.1016/j.jempfin.2012.03.005  0.32
2011 Rodriguez-Granillo A, Annavarapu S, Zhang L, Koder RL, Nanda V. Computational design of thermostabilizing D-amino acid substitutions. Journal of the American Chemical Society. 133: 18750-9. PMID 21978298 DOI: 10.1021/ja205609c  1
2011 Braun P, Goldberg E, Negron C, von Jan M, Xu F, Nanda V, Koder RL, Noy D. Design principles for chlorophyll-binding sites in helical proteins. Proteins. 79: 463-76. PMID 21117078 DOI: 10.1002/prot.22895  1
2011 Gopalan R, Nanda V, Yerramilli V. Does Poor Performance Damage the Reputation of Financial Intermediaries? Evidence from the Loan Syndication Market Journal of Finance. 66: 2083-2120. DOI: 10.1111/j.1540-6261.2011.01692.x  0.32
2010 Nanda V, Koder RL. Designing artificial enzymes by intuition and computation. Nature Chemistry. 2: 15-24. PMID 21124375 DOI: 10.1038/nchem.473  1
2010 Xu F, Zhang L, Koder RL, Nanda V. De novo self-assembling collagen heterotrimers using explicit positive and negative design. Biochemistry. 49: 2307-16. PMID 20170197 DOI: 10.1021/bi902077d  1
2010 Grzyb J, Xu F, Weiner L, Reijerse EJ, Lubitz W, Nanda V, Noy D. De novo design of a non-natural fold for an iron-sulfur protein: alpha-helical coiled-coil with a four-iron four-sulfur cluster binding site in its central core. Biochimica Et Biophysica Acta. 1797: 406-13. PMID 20035711 DOI: 10.1016/j.bbabio.2009.12.012  1
2009 Annavarapu S, Nanda V. Mirrors in the PDB: left-handed alpha-turns guide design with D-amino acids. Bmc Structural Biology. 9: 61. PMID 19772623 DOI: 10.1186/1472-6807-9-61  1
2009 Kar K, Ibrar S, Nanda V, Getz TM, Kunapuli SP, Brodsky B. Aromatic interactions promote self-association of collagen triple-helical peptides to higher-order structures. Biochemistry. 48: 7959-68. PMID 19610672 DOI: 10.1021/bi900496m  1
2009 Mazumdar SC, Nanda V, Surana R. Using auctions to price employee stock options: The case of Zions Bancorporation ESOARS Financial Analysts Journal. 65: 79-99. DOI: 10.2469/faj.v65.n6.3  0.32
2009 Bajaj M, Mazumdar S, Nanda V, Surana R. The NUA benefit and optimal investment in company stock in 401(k) accounts Research in Finance. 25: 203-227.  0.32
2008 McAllister KA, Zou H, Cochran FV, Bender GM, Senes A, Fry HC, Nanda V, Keenan PA, Lear JD, Saven JG, Therien MJ, Blasie JK, DeGrado WF. Using alpha-helical coiled-coils to design nanostructured metalloporphyrin arrays. Journal of the American Chemical Society. 130: 11921-7. PMID 18710226 DOI: 10.1021/ja800697g  1
2008 Stouffer AL, Acharya R, Salom D, Levine AS, Di Costanzo L, Soto CS, Tereshko V, Nanda V, Stayrook S, DeGrado WF. Structural basis for the function and inhibition of an influenza virus proton channel. Nature. 451: 596-9. PMID 18235504 DOI: 10.1038/nature06528  1
2007 Senes A, Chadi DC, Law PB, Walters RF, Nanda V, Degrado WF. E(z), a depth-dependent potential for assessing the energies of insertion of amino acid side-chains into membranes: derivation and applications to determining the orientation of transmembrane and interfacial helices. Journal of Molecular Biology. 366: 436-48. PMID 17174324 DOI: 10.1016/j.jmb.2006.09.020  1
2006 Tatko CD, Nanda V, Lear JD, Degrado WF. Polar networks control oligomeric assembly in membranes. Journal of the American Chemical Society. 128: 4170-1. PMID 16568959 DOI: 10.1021/ja055561a  1
2006 Nanda V, DeGrado WF. Computational design of heterochiral peptides against a helical target. Journal of the American Chemical Society. 128: 809-16. PMID 16417370 DOI: 10.1021/ja054452t  1
2005 Cristian L, Nanda V, Lear JD, DeGrado WF. Synergistic interactions between aqueous and membrane domains of a designed protein determine its fold and stability. Journal of Molecular Biology. 348: 1225-33. PMID 15854657 DOI: 10.1016/j.jmb.2005.03.053  1
2005 Nanda V, Rosenblatt MM, Osyczka A, Kono H, Getahun Z, Dutton PL, Saven JG, Degrado WF. De novo design of a redox-active minimal rubredoxin mimic. Journal of the American Chemical Society. 127: 5804-5. PMID 15839675 DOI: 10.1021/ja050553f  1
2005 Adamian L, Nanda V, DeGrado WF, Liang J. Empirical lipid propensities of amino acid residues in multispan alpha helical membrane proteins. Proteins. 59: 496-509. PMID 15789404 DOI: 10.1002/prot.20456  1
2005 Nanda V, DeGrado WF. Automated use of mutagenesis data in structure prediction. Proteins. 59: 454-66. PMID 15768404 DOI: 10.1002/prot.20382  1
2005 Duong-Ly KC, Nanda V, Degrado WF, Howard KP. The conformation of the pore region of the M2 proton channel depends on lipid bilayer environment. Protein Science : a Publication of the Protein Society. 14: 856-61. PMID 15741338 DOI: 10.1110/ps.041185805  1
2005 Howard KP, Liu W, Crocker E, Nanda V, Lear J, Degrado WF, Smith SO. Rotational orientation of monomers within a designed homo-oligomer transmembrane helical bundle. Protein Science : a Publication of the Protein Society. 14: 1019-24. PMID 15741331 DOI: 10.1110/ps.041110605  1
2005 Stouffer AL, Nanda V, Lear JD, DeGrado WF. Sequence determinants of a transmembrane proton channel: an inverse relationship between stability and function. Journal of Molecular Biology. 347: 169-79. PMID 15733926 DOI: 10.1016/j.jmb.2005.01.023  1
2005 Cochran FV, Wu SP, Wang W, Nanda V, Saven JG, Therien MJ, DeGrado WF. Computational de novo design and characterization of a four-helix bundle protein that selectively binds a nonbiological cofactor. Journal of the American Chemical Society. 127: 1346-7. PMID 15686346 DOI: 10.1021/ja044129a  1
2005 Li W, Metcalf DG, Gorelik R, Li R, Mitra N, Nanda V, Law PB, Lear JD, Degrado WF, Bennett JS. A push-pull mechanism for regulating integrin function. Proceedings of the National Academy of Sciences of the United States of America. 102: 1424-9. PMID 15671157 DOI: 10.1073/pnas.0409334102  1
2004 Nanda V, Degrado WF. Simulated evolution of emergent chiral structures in polyalanine. Journal of the American Chemical Society. 126: 14459-67. PMID 15521766 DOI: 10.1021/ja0461825  1
2004 Lear JD, Stouffer AL, Gratkowski H, Nanda V, Degrado WF. Association of a model transmembrane peptide containing gly in a heptad sequence motif. Biophysical Journal. 87: 3421-9. PMID 15315956 DOI: 10.1529/biophysj.103.032839  1
2004 Tucker MJ, Getahun Z, Nanda V, DeGrado WF, Gai F. A new method for determining the local environment and orientation of individual side chains of membrane-binding peptides. Journal of the American Chemical Society. 126: 5078-9. PMID 15099085 DOI: 10.1021/ja032015d  1
2004 Li R, Gorelik R, Nanda V, Law PB, Lear JD, DeGrado WF, Bennett JS. Dimerization of the transmembrane domain of Integrin alphaIIb subunit in cell membranes. The Journal of Biological Chemistry. 279: 26666-73. PMID 15067009 DOI: 10.1074/jbc.M314168200  0.92
2004 Khajehpour M, Troxler T, Nanda V, Vanderkooi JM. Melittin as model system for probing interactions between proteins and cyclodextrins. Proteins. 55: 275-87. PMID 15048821 DOI: 10.1002/prot.20036  1
2000 Nanda V, Liang SM, Brand L. Hydrophobic clustering in acid-denatured IL-2 and fluorescence of a Trp NH-pi H-bond. Biochemical and Biophysical Research Communications. 279: 770-8. PMID 11162427 DOI: 10.1006/bbrc.2000.4033  1
2000 Nanda V, Brand L. Aromatic interactions in homeodomains contribute to the low quantum yield of a conserved, buried tryptophan. Proteins. 40: 112-25. PMID 10813836 DOI: 10.1002/(SICI)1097-0134(20000701)40:1<112::AID-PROT130>3.0.CO;2-C  1
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