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Xiao-Feng Zheng, Ph.D. - Publications

Affiliations: 
Yale University, New Haven, CT 
Area:
DNA Repair
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22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Sarek G, Kotsantis P, Ruis P, Van Ly D, Margalef P, Borel V, Zheng XF, Flynn HR, Snijders AP, Chowdhury D, Cesare AJ, Boulton SJ. CDK phosphorylation of TRF2 controls t-loop dynamics during the cell cycle. Nature. PMID 31723267 DOI: 10.1038/S41586-019-1744-8  0.373
2018 Xu Y, Luo X, Fang Z, Zheng X, Zeng Y, Zhu C, Gu J, Tang F, Hu Y, Hu G, Jin Y, Li H. Transcription coactivator Cited1 acts as an inducer of trophoblast-like state from mouse embryonic stem cells through the activation of BMP signaling. Cell Death & Disease. 9: 924. PMID 30206204 DOI: 10.1038/S41419-018-0991-1  0.354
2016 Zheng X, Yang P, Lackford B, Bennett BD, Wang L, Li H, Wang Y, Miao Y, Foley JF, Fargo DC, Jin Y, Williams CJ, Jothi R, Hu G. CNOT3-Dependent mRNA Deadenylation Safeguards the Pluripotent State. Stem Cell Reports. PMID 27746116 DOI: 10.1016/J.Stemcr.2016.09.007  0.322
2016 Bunch H, Lawney BP, Burkholder A, Ma D, Zheng X, Motola S, Fargo DC, Levine SS, Wang YE, Hu G. RNA polymerase II promoter-proximal pausing in mammalian long non-coding genes. Genomics. PMID 27432546 DOI: 10.1016/J.Ygeno.2016.07.003  0.3
2016 Xue X, Papusha A, Choi K, Bonner JN, Kumar S, Niu H, Kaur H, Zheng XF, Donnianni RA, Lu L, Lichten M, Zhao X, Ira G, Sung P. Differential regulation of the anti-crossover and replication fork regression activities of Mph1 by Mte1. Genes & Development. PMID 26966246 DOI: 10.1101/Gad.276139.115  0.519
2015 Zheng XF, Kalev P, Chowdhury D. Emerging role of protein phosphatases changes the landscape of phospho-signaling in DNA damage response. Dna Repair. 32: 58-65. PMID 25956864 DOI: 10.1016/J.Dnarep.2015.04.014  0.429
2014 Wang L, Du Y, Ward JM, Shimbo T, Lackford B, Zheng X, Miao YL, Zhou B, Han L, Fargo DC, Jothi R, Williams CJ, Wade PA, Hu G. INO80 facilitates pluripotency gene activation in embryonic stem cell self-renewal, reprogramming, and blastocyst development. Cell Stem Cell. 14: 575-91. PMID 24792115 DOI: 10.1016/J.Stem.2014.02.013  0.352
2014 Zheng X, Hu G. Use of genome-wide RNAi screens to identify regulators of embryonic stem cell pluripotency and self-renewal. Methods in Molecular Biology (Clifton, N.J.). 1150: 163-73. PMID 24743997 DOI: 10.1007/978-1-4939-0512-6_10  0.321
2014 Cinghu S, Yellaboina S, Freudenberg JM, Ghosh S, Zheng X, Oldfield AJ, Lackford BL, Zaykin DV, Hu G, Jothi R. Integrative framework for identification of key cell identity genes uncovers determinants of ES cell identity and homeostasis. Proceedings of the National Academy of Sciences of the United States of America. 111: E1581-90. PMID 24711389 DOI: 10.1073/Pnas.1318598111  0.331
2014 Lackford B, Yao C, Charles GM, Weng L, Zheng X, Choi EA, Xie X, Wan J, Xing Y, Freudenberg JM, Yang P, Jothi R, Hu G, Shi Y. Fip1 regulates mRNA alternative polyadenylation to promote stem cell self-renewal. The Embo Journal. 33: 878-89. PMID 24596251 DOI: 10.1002/Embj.201386537  0.355
2014 Zhao Q, Saro D, Sachpatzidis A, Singh TR, Schlingman D, Zheng XF, Mack A, Tsai MS, Mochrie S, Regan L, Meetei AR, Sung P, Xiong Y. The MHF complex senses branched DNA by binding a pair of crossover DNA duplexes. Nature Communications. 5: 2987. PMID 24390579 DOI: 10.1038/Ncomms3987  0.482
2013 Wang L, Miao YL, Zheng X, Lackford B, Zhou B, Han L, Yao C, Ward JM, Burkholder A, Lipchina I, Fargo DC, Hochedlinger K, Shi Y, Williams CJ, Hu G. The THO complex regulates pluripotency gene mRNA export and controls embryonic stem cell self-renewal and somatic cell reprogramming. Cell Stem Cell. 13: 676-90. PMID 24315442 DOI: 10.1016/J.Stem.2013.10.008  0.345
2012 Daee DL, Ferrari E, Longerich S, Zheng XF, Xue X, Branzei D, Sung P, Myung K. Rad5-dependent DNA repair functions of the Saccharomyces cerevisiae FANCM protein homolog Mph1. The Journal of Biological Chemistry. 287: 26563-75. PMID 22696213 DOI: 10.1074/Jbc.M112.369918  0.507
2012 Zheng X, Hu G. Oct4GiP reporter assay to study genes that regulate mouse embryonic stem cell maintenance and self-renewal. Journal of Visualized Experiments : Jove. PMID 22688536 DOI: 10.3791/3987  0.313
2012 Islam MN, Paquet N, Fox D, Dray E, Zheng XF, Klein H, Sung P, Wang W. A variant of the breast cancer type 2 susceptibility protein (BRC) repeat is essential for the RECQL5 helicase to interact with RAD51 recombinase for genome stabilization. The Journal of Biological Chemistry. 287: 23808-18. PMID 22645136 DOI: 10.1074/Jbc.M112.375014  0.485
2012 Beaucher M, Zheng XF, Amariei F, Rong YS. Multiple pathways suppress telomere addition to DNA breaks in the Drosophila germline. Genetics. 191: 407-17. PMID 22446318 DOI: 10.1534/Genetics.112.138818  0.396
2012 Zheng X, Dumitru R, Lackford BL, Freudenberg JM, Singh AP, Archer TK, Jothi R, Hu G. Cnot1, Cnot2, and Cnot3 maintain mouse and human ESC identity and inhibit extraembryonic differentiation. Stem Cells (Dayton, Ohio). 30: 910-22. PMID 22367759 DOI: 10.1002/Stem.1070  0.36
2012 Freudenberg JM, Ghosh S, Lackford BL, Yellaboina S, Zheng X, Li R, Cuddapah S, Wade PA, Hu G, Jothi R. Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity. Nucleic Acids Research. 40: 3364-77. PMID 22210859 DOI: 10.1093/Nar/Gkr1253  0.376
2011 Zheng XF, Prakash R, Saro D, Longerich S, Niu H, Sung P. Processing of DNA structures via DNA unwinding and branch migration by the S. cerevisiae Mph1 protein. Dna Repair. 10: 1034-43. PMID 21880555 DOI: 10.1016/J.Dnarep.2011.08.002  0.585
2010 Boyer A, Lapointe E, Zheng X, Cowan RG, Li H, Quirk SM, DeMayo FJ, Richards JS, Boerboom D. WNT4 is required for normal ovarian follicle development and female fertility. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 24: 3010-25. PMID 20371632 DOI: 10.1096/Fj.09-145789  0.316
2010 Singh TR, Saro D, Ali AM, Zheng XF, Du CH, Killen MW, Sachpatzidis A, Wahengbam K, Pierce AJ, Xiong Y, Sung P, Meetei AR. MHF1-MHF2, a histone-fold-containing protein complex, participates in the Fanconi anemia pathway via FANCM. Molecular Cell. 37: 879-86. PMID 20347429 DOI: 10.1016/J.Molcel.2010.01.036  0.505
1997 Zheng XF, Schreiber SL. Target of rapamycin proteins and their kinase activities are required for meiosis. Proceedings of the National Academy of Sciences of the United States of America. 94: 3070-5. PMID 9096347 DOI: 10.1073/Pnas.94.7.3070  0.334
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