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Yi Xue, Ph.D. - Publications

Affiliations: 
Chemistry Northwestern University, Evanston, IL 
Area:
Research Interests: Inorganic, Synthetic, Bio-inorganic, Medicinal Chemistry, Chemical Biology, Organic, X-Ray Crystallography, Physical, Biophysical, Bio-analytical, Environmental, Nanoscience
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57 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Zhao S, Yang Y, Zhao Y, Li X, Xue Y, Wang S. High-resolution solid-state NMR spectroscopy of hydrated non-crystallized RNA. Chemical Communications (Cambridge, England). PMID 31687672 DOI: 10.1039/c9cc06552k  0.44
2017 Arnst KE, Wang Y, Hwang DJ, Xue Y, Costello T, Hamilton D, Chen Q, Yang J, Park F, Dalton JT, Miller DD, Li W. A potent, metabolically stable tubulin inhibitor targets the colchicine binding site and overcomes taxane resistance. Cancer Research. PMID 29180476 DOI: 10.1158/0008-5472.CAN-17-0577  0.32
2016 Muftuoglu Y, Xue Y, Gao X, Wu D, Ha Y. Mechanism of substrate specificity of phosphatidylinositol phosphate kinases. Proceedings of the National Academy of Sciences of the United States of America. PMID 27439870 DOI: 10.1073/pnas.1522112113  0.48
2016 Yuwen T, Xue Y, Skrynnikov NR. Role of electrostatic interactions in binding of peptides and intrinsically disordered proteins to their folded targets. 2. The model of encounter complex involving the double mutant of the c-Crk N-SH3 domain and peptide Sos. Biochemistry. PMID 26910732 DOI: 10.1021/acs.biochem.5b01283  0.48
2016 Wang Y, Chang Y, Xue Y, Li Z, Xue C. Rheology and microstructure of heat-induced fluid gels from Antarctic krill (Euphausia superba) protein: Effect of pH Food Hydrocolloids. 52: 510-519. DOI: 10.1016/j.foodhyd.2015.07.032  0.32
2016 Wang Y, Chang Y, Xue Y, Li Z, Xue C. Rheology and microstructure of heat-induced fluid gels from Antarctic krill (Euphausia superba) protein: Effect of pH Food Hydrocolloids. 52: 510-519. DOI: 10.1016/j.foodhyd.2015.07.032  0.32
2015 Xue Q, Zhao Z, Liu H, Chen K, Xue Y, Wang L. First comparison of adjuvant for trivalent inactivated Haemophilus parasuis serovars 4, 5 and 12 vaccines against Glässer's disease. Veterinary Immunology and Immunopathology. 168: 153-158. PMID 26672914 DOI: 10.1016/j.vetimm.2015.11.001  0.44
2015 Zou L, Tu G, Xie W, Wen S, Xie Q, Liu S, Li G, Gao Y, Xu H, Wang S, Xue Y, Wu B, Lv Q, Ying M, Zhang X, et al. LncRNA NONRATT021972 involved the pathophysiologic processes mediated by P2X7 receptors in stellate ganglia after myocardial ischemic injury. Purinergic Signalling. PMID 26630943 DOI: 10.1007/s11302-015-9486-z  0.44
2015 Shen Y, Stracquadanio G, Wang Y, Yang K, Mitchell LA, Xue Y, Cai Y, Chen T, Dymond JS, Kang K, Gong J, Zeng X, Zhang Y, Li Y, Feng Q, et al. SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes. Genome Research. PMID 26566658 DOI: 10.1101/gr.193433.115  0.32
2015 Zhang T, Wang Y, Kong L, Xue Y, Tang M. Threshold Dose of Three Types of Quantum Dots (QDs) Induces Oxidative Stress Triggers DNA Damage and Apoptosis in Mouse Fibroblast L929 Cells. International Journal of Environmental Research and Public Health. 12: 13435-54. PMID 26516873 DOI: 10.3390/ijerph121013435  0.32
2015 Wang Z, Liu J, Xu ZQ, Xue Y, Jiang L, Song J, Huang F, Wang Y, Zhong YL, Zhang Y, Cheng YB, Bao Q. Wavelength-tunable waveguides based on polycrystalline organic-inorganic perovskite microwires. Nanoscale. PMID 26508593 DOI: 10.1039/c5nr06262d  0.32
2015 Wu C, Pan J, Qiu H, Xue Y, Chen S, Wu Y, Zhang J, Bai S, Wang Y, Shen J, Gong Y. Microarray CGH analysis of hematological patients with del(20q). International Journal of Hematology. PMID 26440974 DOI: 10.1007/s12185-015-1872-3  0.32
2015 Ma P, Xue Y, Coquelle N, Haller JD, Yuwen T, Ayala I, Mikhailovskii O, Willbold D, Colletier JP, Skrynnikov NR, Schanda P. Observing the overall rocking motion of a protein in a crystal. Nature Communications. 6: 8361. PMID 26436197 DOI: 10.1038/ncomms9361  0.48
2015 Liu X, Xu J, Xue Y, Gao Z, Li Z, Leng K, Wang J, Xue C, Wang Y. Sea cucumber cerebrosides and long-chain bases from Acaudina molpadioides protect against high fat diet-induced metabolic disorders in mice. Food & Function. PMID 26399628 DOI: 10.1039/c5fo00602c  0.32
2015 Zhao L, Wang Y, Xue Y, Lv W, Zhang Y, He S. Critical roles of chemokine receptor CCR5 in regulating glioblastoma proliferation and invasion. Acta Biochimica Et Biophysica Sinica. PMID 26390883 DOI: 10.1093/abbs/gmv095  0.32
2015 Li Z, Liu Z, Dong S, Zhang J, Tan J, Wang Y, Ge C, Li R, Xue Y, Li M, Wang W, Xiang X, Yang J, Ding H, Geng T, et al. miR-506 Inhibits Epithelial-to-Mesenchymal Transition and Angiogenesis in Gastric Cancer. The American Journal of Pathology. 185: 2412-20. PMID 26362716 DOI: 10.1016/j.ajpath.2015.05.017  0.32
2015 Lv Q, Xue Y, Li G, Zou L, Zhang X, Ying M, Wang S, Guo L, Gao Y, Li G, Xu H, Liu S, Xie J, Liang S. Beneficial effects of evodiamine on P2X4-mediated inflammatory injury of human umbilical vein endothelial cells due to high glucose. International Immunopharmacology. 28: 1044-9. PMID 26344431 DOI: 10.1016/j.intimp.2015.08.020  0.44
2015 Wang H, Gao B, Wang S, Fang J, Xue Y, Yang K. Removal of Pb(II), Cu(II), and Cd(II) from aqueous solutions by biochar derived from KMnO4 treated hickory wood. Bioresource Technology. 197: 356-62. PMID 26344243 DOI: 10.1016/j.biortech.2015.08.132  0.44
2015 Wu G, Wang K, Xue Y, Song G, Wang Y, Sun X, Zhong L, Zhou C, Shen B, Chen J, Yu Y, Tang H, Peng Z, Sun P, Wang X. Association of rs5764455 and rs6006473 polymorphisms in PARVB with liver damage of nonalcoholic fatty liver disease in Han Chinese population. Gene. PMID 26343796 DOI: 10.1016/j.gene.2015.09.007  0.32
2015 Wang S, He Q, Ma D, Xue Y, Liu F. Irf4 Regulates the Choice between T Lymphoid-Primed Progenitor and Myeloid Lineage Fates during Embryogenesis. Developmental Cell. PMID 26300447 DOI: 10.1016/j.devcel.2015.07.011  0.44
2015 Tao J, Kang Y, Xue Z, Wang Y, Zhang Y, Chen Q, Chen Z, Xue Y. Theoretical study on the N-demethylation mechanism of theobromine catalyzed by P450 isoenzyme 1A2. Journal of Molecular Graphics & Modelling. 61: 123-132. PMID 26218892 DOI: 10.1016/j.jmgm.2015.06.017  0.32
2015 Su F, Xue Y, Wang Y, Zhang L, Chen W, Hu S. Protective Effect of Ginsenosides Rg1 and Re on Lipopolysaccharide-Induced Sepsis by Competitive Binding to Toll-Like Receptor 4. Antimicrobial Agents and Chemotherapy. 59: 5654-63. PMID 26149990 DOI: 10.1128/AAC.01381-15  0.32
2015 Li X, Xue Y, Cheng H, Lin Y, Zhou L, Ning Z, Wang X, Yu X, Zhang W, Shen F, Zheng X, Gai J, Li X, Kang L, Nyambi P, et al. HIV-1 Genetic Diversity and Its Impact on Baseline CD4+T Cells and Viral Loads among Recently Infected Men Who Have Sex with Men in Shanghai, China. Plos One. 10: e0129559. PMID 26121491 DOI: 10.1371/journal.pone.0129559  0.32
2015 Wang H, Gao B, Wang S, Fang J, Xue Y, Yang K. Removal of Pb(II), Cu(II), and Cd(II) from aqueous solutions by biochar derived from KMnO4 treated hickory wood Bioresource Technology. 197: 356-362. DOI: 10.1016/j.biortech.2015.08.132  0.44
2015 Zhou J, Tian H, Zhu C, Hao J, Gao J, Wang Y, Xue Y, Hua S, Wang K. Future trends of global atmospheric antimony emissions from anthropogenic activities until 2050 Atmospheric Environment. 120: 385-392. DOI: 10.1016/j.atmosenv.2015.09.018  0.32
2015 Zhou J, Tian H, Zhu C, Hao J, Gao J, Wang Y, Xue Y, Hua S, Wang K. Future trends of global atmospheric antimony emissions from anthropogenic activities until 2050 Atmospheric Environment. 120: 385-392. DOI: 10.1016/j.atmosenv.2015.09.018  0.32
2014 Gilston BA, Wang S, Marcus MD, Canalizo-Hernández MA, Swindell EP, Xue Y, Mondragón A, O'Halloran TV. Structural and mechanistic basis of zinc regulation across the E. coli Zur regulon. Plos Biology. 12: e1001987. PMID 25369000 DOI: 10.1371/journal.pbio.1001987  0.44
2014 Zhou W, Pan H, Xia T, Xue J, Cheng L, Fan P, Zhang Y, Zhu W, Xue Y, Liu X, Ding Q, Liu Y, Wang S. Up-regulation of S100A16 expression promotes epithelial-mesenchymal transition via Notch1 pathway in breast cancer. Journal of Biomedical Science. 21: 97. PMID 25287362 DOI: 10.1186/s12929-014-0097-8  0.44
2014 Xue Y, Yuwen T, Zhu F, Skrynnikov NR. Role of electrostatic interactions in binding of peptides and intrinsically disordered proteins to their folded targets. 1. NMR and MD characterization of the complex between the c-Crk N-SH3 domain and the peptide Sos. Biochemistry. 53: 6473-95. PMID 25207671 DOI: 10.1021/bi500904f  0.48
2014 del Amo JM, Agarwal V, Sarkar R, Porter J, Asami S, Rübbelke M, Fink U, Xue Y, Lange OF, Reif B. Site-specific analysis of heteronuclear Overhauser effects in microcrystalline proteins. Journal of Biomolecular Nmr. 59: 241-9. PMID 24989039 DOI: 10.1007/s10858-014-9843-1  0.48
2014 Xue Y, Skrynnikov NR. Ensemble MD simulations restrained via crystallographic data: accurate structure leads to accurate dynamics. Protein Science : a Publication of the Protein Society. 23: 488-507. PMID 24452989 DOI: 10.1002/pro.2433  0.48
2013 Xue Y, Kim MK, Pašková T, Zimmt MB. Odd or even? Monolayer domain size depends on diyne position in alkadiynylanthracenes. The Journal of Physical Chemistry. B. 117: 15856-65. PMID 24063583 DOI: 10.1021/jp4084376  0.48
2013 Kim MK, Xue Y, Pašková T, Zimmt MB. Monolayer patterning using ketone dipoles. Physical Chemistry Chemical Physics : Pccp. 15: 12466-74. PMID 23632754 DOI: 10.1039/c3cp50808k  0.48
2013 Xue Y, Ha Y. Large lateral movement of transmembrane helix S5 is not required for substrate access to the active site of rhomboid intramembrane protease. The Journal of Biological Chemistry. 288: 16645-54. PMID 23609444 DOI: 10.1074/jbc.M112.438127  0.48
2013 Ha Y, Akiyama Y, Xue Y. Structure and mechanism of rhomboid protease. The Journal of Biological Chemistry. 288: 15430-6. PMID 23585569 DOI: 10.1074/jbc.R112.422378  0.48
2012 Xue Y, Chowdhury S, Liu X, Akiyama Y, Ellman J, Ha Y. Conformational change in rhomboid protease GlpG induced by inhibitor binding to its S' subsites. Biochemistry. 51: 3723-31. PMID 22515733 DOI: 10.1021/bi300368b  0.48
2012 Xue Y, Zimmt MB. Patterned monolayer self-assembly programmed by side chain shape: four-component gratings. Journal of the American Chemical Society. 134: 4513-6. PMID 22369569 DOI: 10.1021/ja2115019  0.48
2012 Xue Y, Ward JM, Yuwen T, Podkorytov IS, Skrynnikov NR. Microsecond time-scale conformational exchange in proteins: using long molecular dynamics trajectory to simulate NMR relaxation dispersion data. Journal of the American Chemical Society. 134: 2555-62. PMID 22206299 DOI: 10.1021/ja206442c  0.48
2012 Xue Y, Ha Y. Catalytic mechanism of rhomboid protease GlpG probed by 3,4-dichloroisocoumarin and diisopropyl fluorophosphonate. The Journal of Biological Chemistry. 287: 3099-107. PMID 22130671 DOI: 10.1074/jbc.M111.310482  0.48
2011 Xue Y, Lee S, Ha Y. Crystal structure of amyloid precursor-like protein 1 and heparin complex suggests a dual role of heparin in E2 dimerization. Proceedings of the National Academy of Sciences of the United States of America. 108: 16229-34. PMID 21930949 DOI: 10.1073/pnas.1103407108  0.48
2011 Xue Y, Skrynnikov NR. Motion of a disordered polypeptide chain as studied by paramagnetic relaxation enhancements, 15N relaxation, and molecular dynamics simulations: how fast is segmental diffusion in denatured ubiquitin? Journal of the American Chemical Society. 133: 14614-28. PMID 21819149 DOI: 10.1021/ja201605c  0.48
2011 Hu J, Xue Y, Lee S, Ha Y. The crystal structure of GXGD membrane protease FlaK. Nature. 475: 528-31. PMID 21765428 DOI: 10.1038/nature10218  0.48
2011 Xue Y, Lee S, Wang Y, Ha Y. Crystal structure of the E2 domain of amyloid precursor protein-like protein 1 in complex with sucrose octasulfate. The Journal of Biological Chemistry. 286: 29748-57. PMID 21715329 DOI: 10.1074/jbc.M111.219659  0.48
2011 Xue Y, Zimmt MB. Tetris in monolayers: patterned self-assembly using side chain shape. Chemical Communications (Cambridge, England). 47: 8832-4. PMID 21695324 DOI: 10.1039/c1cc12498f  0.48
2011 Lee S, Xue Y, Hu J, Wang Y, Liu X, Demeler B, Ha Y. The E2 domains of APP and APLP1 share a conserved mode of dimerization. Biochemistry. 50: 5453-64. PMID 21574595 DOI: 10.1021/bi101846x  0.48
2010 Chevelkov V, Xue Y, Linser R, Skrynnikov NR, Reif B. Comparison of solid-state dipolar couplings and solution relaxation data provides insight into protein backbone dynamics. Journal of the American Chemical Society. 132: 5015-7. PMID 20297847 DOI: 10.1021/ja100645k  0.48
2010 Chevelkov V, Xue Y, Rao DK, Forman-Kay JD, Skrynnikov NR. 15N H/D-SOLEXSY experiment for accurate measurement of amide solvent exchange rates: application to denatured drkN SH3. Journal of Biomolecular Nmr. 46: 227-44. PMID 20195703 DOI: 10.1007/s10858-010-9398-8  0.48
2010 Alvarez HM, Xue Y, Robinson CD, Canalizo-Hernández MA, Marvin RG, Kelly RA, Mondragón A, Penner-Hahn JE, O'Halloran TV. Tetrathiomolybdate inhibits copper trafficking proteins through metal cluster formation. Science (New York, N.Y.). 327: 331-4. PMID 19965379 DOI: 10.1126/science.1179907  0.48
2009 Xu J, Xue Y, Skrynnikov NR. Detection of nanosecond time scale side-chain jumps in a protein dissolved in water/glycerol solvent. Journal of Biomolecular Nmr. 45: 57-72. PMID 19582374 DOI: 10.1007/s10858-009-9336-9  0.48
2009 Xue Y, Podkorytov IS, Rao DK, Benjamin N, Sun H, Skrynnikov NR. Paramagnetic relaxation enhancements in unfolded proteins: theory and application to drkN SH3 domain. Protein Science : a Publication of the Protein Society. 18: 1401-24. PMID 19544584 DOI: 10.1002/pro.153  0.48
2008 Agarwal V, Xue Y, Reif B, Skrynnikov NR. Protein side-chain dynamics as observed by solution- and solid-state NMR spectroscopy: a similarity revealed. Journal of the American Chemical Society. 130: 16611-21. PMID 19049457 DOI: 10.1021/ja804275p  0.48
2008 Xue Y, Davis AV, Balakrishnan G, Stasser JP, Staehlin BM, Focia P, Spiro TG, Penner-Hahn JE, O'Halloran TV. Cu(I) recognition via cation-pi and methionine interactions in CusF. Nature Chemical Biology. 4: 107-9. PMID 18157124 DOI: 10.1038/nchembio.2007.57  0.48
2007 Chevelkov V, Zhuravleva AV, Xue Y, Reif B, Skrynnikov NR. Combined analysis of (15)N relaxation data from solid- and solution-state NMR spectroscopy. Journal of the American Chemical Society. 129: 12594-5. PMID 17902660 DOI: 10.1021/ja073234s  0.48
2007 Ryabov Y, White C, Xue Y, Skrynnikov NR. Introducing color into stacking gels makes sample loading easy. Analytical Biochemistry. 366: 111-2. PMID 17490595 DOI: 10.1016/j.ab.2007.04.002  0.48
2007 Xue Y, Pavlova MS, Ryabov YE, Reif B, Skrynnikov NR. Methyl rotation barriers in proteins from 2H relaxation data. Implications for protein structure. Journal of the American Chemical Society. 129: 6827-38. PMID 17488010 DOI: 10.1021/ja0702061  0.48
2006 Reif B, Xue Y, Agarwal V, Pavlova MS, Hologne M, Diehl A, Ryabov YE, Skrynnikov NR. Protein side-chain dynamics observed by solution- and solid-state NMR: comparative analysis of methyl 2H relaxation data. Journal of the American Chemical Society. 128: 12354-5. PMID 16984151 DOI: 10.1021/ja062808a  0.48
2003 Changela A, Chen K, Xue Y, Holschen J, Outten CE, O'Halloran TV, Mondragón A. Molecular basis of metal-ion selectivity and zeptomolar sensitivity by CueR. Science (New York, N.Y.). 301: 1383-7. PMID 12958362 DOI: 10.1126/science.1085950  0.48
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