Rena A. Sowell, Ph.D. - Related publications

Chemistry Indiana University, Bloomington, Bloomington, IN, United States 
Structure analysis of biological systems using mass spectrometry-based techniques
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50 most relevant papers in past 60 days:
Year Citation  Score
2019 Madugundu AK, Na CH, Nirujogi RS, Renuse S, Kim KP, Burns KH, Wilks C, Langmead B, Ellis SE, Collado-Torres L, Halushka MK, Kim MS, Pandey A. Integrated Transcriptomic and Proteomic Analysis of Primary Human Umbilical Vein Endothelial cells. Proteomics. e1800315. PMID 30983154 DOI: 10.1002/pmic.201800315   
2019 Federspiel JD, Cristea IM. Considerations for Identifying Endogenous Protein Complexes from Tissue via Immunoaffinity Purification and Quantitative Mass Spectrometry. Methods in Molecular Biology (Clifton, N.J.). 1977: 115-143. PMID 30980326 DOI: 10.1007/978-1-4939-9232-4_9   
2019 Kuznetsova KG, Ivanov MV, Pyatnitskiy MA, Levitsky LI, Ilina IY, Chernobrovkin AL, Zubarev RA, Gorhskov MV, Moshkovskii SA. Brain Proteome of Drosophila melanogaster Is Enriched with Nuclear Proteins. Biochemistry. Biokhimiia. 84: 71-78. PMID 30927528 DOI: 10.1134/S0006297919010097   
2019 Lam I, Hallacli E, Khurana V. Proteome-Scale Mapping of Perturbed Proteostasis in Living Cells. Cold Spring Harbor Perspectives in Biology. PMID 30910772 DOI: 10.1101/cshperspect.a034124   
2019 Wu Y, Yuan Y, Chen L, Wang M, Yang Y, Wang Y, Quan C, Chen D, Chen Y, Huang X, Zhou T. Quantitative Proteomic Analysis of Human Seminal Plasma from Normozoospermic and Asthenozoospermic Individuals. Biomed Research International. 2019: 2735038. PMID 30984777 DOI: 10.1155/2019/2735038   
2019 Huang YT, van der Hoorn D, Ledahawsky LM, Motyl AAL, Jordan CY, Gillingwater TH, Groen EJN. Robust Comparison of Protein Levels Across Tissues and Throughout Development Using Standardized Quantitative Western Blotting. Journal of Visualized Experiments : Jove. PMID 31033956 DOI: 10.3791/59438   
2019 Gentzel M, Pardo M, Subramaniam S, Francis Stewart A, Choudhary JS. Proteomic navigation using proximity-labeling. Methods (San Diego, Calif.). PMID 30953756 DOI: 10.1016/j.ymeth.2019.03.028   
2019 Sun W, Dai L, Yu H, Puspita B, Zhao T, Li F, Tan JL, Lim YT, Chen MW, Sobota RM, Tenen DG, Prabhu N, Nordlund P. Monitoring structural modulation of redox-sensitive proteins in cells with MS-CETSA. Redox Biology. 24: 101168. PMID 30925293 DOI: 10.1016/j.redox.2019.101168   
2019 Zeng R, Farooq MU, Wang L, Su Y, Zheng T, Ye X, Jia X, Zhu J. Study on Differential Protein Expression in Natural Selenium-Enriched and Non-Selenium-Enriched Rice Based on iTRAQ Quantitative Proteomics. Biomolecules. 9. PMID 30935009 DOI: 10.3390/biom9040130   
2019 Zhao Y, Xiao K. Proteomic Analysis of the β-Arrestin Interactomes. Methods in Molecular Biology (Clifton, N.J.). 1957: 217-232. PMID 30919357 DOI: 10.1007/978-1-4939-9158-7_14   
2019 Simon Á, Gulyás G, Mészár Z, Bhide M, Oláh J, Bai P, Csősz É, Jávor A, Komlósi I, Remenyik J, Czeglédi L. Proteomics alterations in chicken jejunum caused by 24 h fasting. Peerj. 7: e6588. PMID 30941268 DOI: 10.7717/peerj.6588   
2019 Wesson JA, Kolbach-Mandel AM, Hoffmann BR, Davis C, Mandel NS. Selective protein enrichment in calcium oxalate stone matrix: a window to pathogenesis? Urolithiasis. PMID 30993355 DOI: 10.1007/s00240-019-01131-3   
2019 Clark DJ, Hu Y, Schnaubelt M, Fu Y, Ponce S, Chen SY, Zhou Y, Shah P, Zhang H. Simple Tip-Based Sample Processing Method for Urinary Proteomic Analysis. Analytical Chemistry. PMID 30924636 DOI: 10.1021/acs.analchem.8b05234   
2019 Meyer JG. Fast Proteome Identification and Quantification from Data-Dependent Acquisition-Tandem Mass Spectrometry (DDA MS/MS) Using Free Software Tools. Methods and Protocols. 2. PMID 31008411 DOI: 10.3390/mps2010008   
2019 Wood V, Lock A, Harris MA, Rutherford K, Bähler J, Oliver SG. Hidden in plain sight: what remains to be discovered in the eukaryotic proteome? Open Biology. 9: 180241. PMID 30938578 DOI: 10.1098/rsob.180241   
2019 Fernández MR, Pallarès I, Iglesias V, Santos J, Ventura S. Formation of Cross-Beta Supersecondary Structure by Soft-Amyloid Cores: Strategies for Their Prediction and Characterization. Methods in Molecular Biology (Clifton, N.J.). 1958: 237-261. PMID 30945222 DOI: 10.1007/978-1-4939-9161-7_12   
2019 Krisko A, Radman M. Protein damage, ageing and age-related diseases. Open Biology. 9: 180249. PMID 30914006 DOI: 10.1098/rsob.180249   
2019 Dong HS, Zhang JX, Hu Q, Wang YC, Sun J, Zhang S, Yu H, Feng R, Mao XH, Ji S. [Study on proteins in Guangdilong by nano LC/orbitrap fusion lumos HR-MS]. Zhongguo Zhong Yao Za Zhi = Zhongguo Zhongyao Zazhi = China Journal of Chinese Materia Medica. 44: 324-331. PMID 30989953 DOI: 10.19540/j.cnki.cjcmm.20181009.012   
2019 Rocheleau AD, Melrose AR, Cunliffe JM, Klimek J, Babur Ö, Yunga ST, Ngo ATP, Pang J, David LL, McCarty OJT, Aslan JE. Identification, Quantification and Systems Analysis of Protein N-ε Lysine Methylation in Anucleate Blood Platelets. Proteomics. e1900001. PMID 30977292 DOI: 10.1002/pmic.201900001   
2019 Joshi V, Mishra R, Upadhyay A, Amanullah A, Poluri KM, Singh S, Kumar A, Mishra A. Polyphenolic flavonoid (Myricetin) upregulated proteasomal degradation mechanisms: Eliminates neurodegenerative proteins aggregation. Journal of Cellular Physiology. PMID 31004355 DOI: 10.1002/jcp.28695   
2019 Simmons DB, Cowie AM, Koh J, Sherry JP, Martyniuk CJ. Label-free and iTRAQ proteomics analysis in the liver of zebrafish (Danio rerio) following dietary exposure to the organochlorine pesticide dieldrin. Journal of Proteomics. PMID 31022476 DOI: 10.1016/j.jprot.2019.04.012   
2019 Liu Z, Wang R, Liu J, Sun R, Wang F. Global quantification of intact proteins via chemical isotope labeling and mass spectrometry. Journal of Proteome Research. PMID 30990045 DOI: 10.1021/acs.jproteome.9b00071   
2019 Murphy S, Zweyer M, Raucamp M, Henry M, Meleady P, Swandulla D, Ohlendieck K. Proteomic profiling of the mouse diaphragm and refined mass spectrometric analysis of the dystrophic phenotype. Journal of Muscle Research and Cell Motility. PMID 30888583 DOI: 10.1007/s10974-019-09507-z   
2019 Iglesias V, Paladin L, Juan-Blanco T, Pallarès I, Aloy P, Tosatto SCE, Ventura S. Characterization of Human Prion-Like Proteins: Beyond Neurological Diseases. Frontiers in Physiology. 10: 314. PMID 30971948 DOI: 10.3389/fphys.2019.00314   
2019 Wilson RS, Rauniyar N, Sakaue F, Lam TT, Williams KR, Nairn AC. Development of Targeted Mass Spectrometry-Based Approaches for Quantitation of Proteins Enriched in the Postsynaptic Density (PSD). Proteomes. 7. PMID 30986977 DOI: 10.3390/proteomes7020012   
2019 Yan B, Taylor AJ, Bunch J. Cryo-LESA Mass Spectrometry-a Step Towards Truly Native Surface Sampling of Proteins. Journal of the American Society For Mass Spectrometry. PMID 30927181 DOI: 10.1007/s13361-019-02178-7   
2019 Cima-Cabal MD, Vazquez F, de Los Toyos JR, Del Mar García-Suárez M. Protein Expression Analysis by Western Blot and Protein-Protein Interactions. Methods in Molecular Biology (Clifton, N.J.). 1968: 101-111. PMID 30929209 DOI: 10.1007/978-1-4939-9199-0_9   
2019 Fu X, Chang Z. Biogenesis, quality control and structural dynamics of proteins as explored in living cells via site-directed photo-crosslinking. Protein Science : a Publication of the Protein Society. PMID 31002747 DOI: 10.1002/pro.3627   
2019 Booth SG, Felisilda BMB, Alvarez de Eulate E, Gustafsson OJR, Arooj M, Mancera RL, Dryfe RAW, Hackett MJ, Arrigan DWM. Secondary Structural Changes in Proteins as a Result of Electroadsorption at Aqueous-Organogel Interfaces. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 30955327 DOI: 10.1021/acs.langmuir.8b04227   
2019 Wen W, Zhao Z, Li R, Guan J, Zhou Z, Luo X, Suman SP, Sun Q. Skeletal muscle proteome analysis provides insights on high altitude adaptation of yaks. Molecular Biology Reports. PMID 30982215 DOI: 10.1007/s11033-019-04732-8   
2019 Butt AH, Rasool N, Khan YD. Prediction of Antioxidant proteins by incorporating statistical moments based features into Chou's PseAAC. Journal of Theoretical Biology. PMID 31005614 DOI: 10.1016/j.jtbi.2019.04.019   
2019 Sousa DM, Cunha NMFD, Silva DRD, Aragão PTTD, Aguiar MVA, Lobo MDP, Moreira ACOM, Cunha RMSD, Miranda RRC, Bevilaqua CML. Differences in protein expression associated with ivermectin resistance in Caenorhabditis elegans. Revista Brasileira De Parasitologia Veterinaria = Brazilian Journal of Veterinary Parasitology : Orgao Oficial Do Colegio Brasileiro De Parasitologia Veterinaria. 28: 105-112. PMID 30916256 DOI: 10.1590/S1984-29612019013   
2019 Tejano LA, Peralta JP, Yap EES, Panjaitan FCA, Chang YW. Prediction of Bioactive Peptides from Proteins Using Proteomic Techniques in Combination with Bioinformatics Analyses. International Journal of Molecular Sciences. 20. PMID 30978907 DOI: 10.3390/ijms20071786   
2019 Desoubeaux G, Piqueras MDC, Le-Bert C, Fravel V, Clauss T, Delaune AJ, Daniels R, Jensen ED, Flower JE, Bossart GD, Bhattacharya SK, Cray C. Labeled quantitative mass spectrometry to study the host response during aspergillosis in the common bottlenose dolphin (Tursiops truncatus). Veterinary Microbiology. 232: 42-49. PMID 31030843 DOI: 10.1016/j.vetmic.2019.03.030   
2019 March ZM, Mack KL, Shorter J. AAA+ Protein-Based Technologies to Counter Neurodegenerative Disease. Biophysical Journal. PMID 30952364 DOI: 10.1016/j.bpj.2019.03.007   
2019 Guergues J, Zhang P, Liu B, Stevens SM. Improved Methodology for Sensitive and Rapid Quantitative Proteomic Analysis of Adult-Derived Mouse Microglia: Application to a Novel In Vitro Mouse Microglial Cell Model. Proteomics. e1800469. PMID 30980500 DOI: 10.1002/pmic.201800469   
2019 Dai L, Prabhu N, Yu LY, Bacanu S, Ramos AD, Nordlund P. Horizontal Cell Biology: Monitoring Global Changes of Protein Interaction States with the Proteome-Wide Cellular Thermal Shift Assay (CETSA). Annual Review of Biochemistry. PMID 30939043 DOI: 10.1146/annurev-biochem-062917-012837   
2019 Datki Z, Olah Z, Macsai L, Pakaski M, Galik B, Mihaly G, Kalman J. Application of BisANS fluorescent dye for developing a novel protein assay. Plos One. 14: e0215863. PMID 31002721 DOI: 10.1371/journal.pone.0215863   
2019 Karim N, Phinney BS, Salemi M, Wu PW, Naeem M, Rice RH. Human stratum corneum proteomics reveals cross-linking of a broad spectrum of proteins in cornified envelopes. Experimental Dermatology. PMID 30916809 DOI: 10.1111/exd.13925   
2019 Kim SJ, Hatch ST, Dixon AS, Owen SC. Split-enzyme fragment as a single affinity tag that enables protein expression, purification, and functional assays. Biotechnology and Bioengineering. PMID 30934115 DOI: 10.1002/bit.26980   
2019 Zou L, Wang X, Guo Z, Sun H, Shao C, Yang Y, Sun W. Differential urinary proteomics analysis of myocardial infarction using iTRAQ quantification. Molecular Medicine Reports. PMID 30942401 DOI: 10.3892/mmr.2019.10088   
2019 Mehaffy C, Belisle JT, Dobos KM. Mycobacteria and their sweet proteins: An overview of protein glycosylation and lipoglycosylation in M. tuberculosis. Tuberculosis (Edinburgh, Scotland). 115: 1-13. PMID 30948163 DOI: 10.1016/   
2019 Wang G, Björk SM, Huang M, Liu Q, Campbell K, Nielsen J, Joensson HN, Petranovic D. RNAi expression tuning, microfluidic screening, and genome recombineering for improved protein production in . Proceedings of the National Academy of Sciences of the United States of America. PMID 31000602 DOI: 10.1073/pnas.1820561116   
2019 Krief G, Haviv Y, Deutsch O, Keshet N, Almoznino G, Zacks B, Palmon A, Aframian DJ. Proteomic profiling of whole-saliva reveals correlation between Burning Mouth Syndrome and the neurotrophin signaling pathway. Scientific Reports. 9: 4794. PMID 30886243 DOI: 10.1038/s41598-019-41297-9   
2019 Kumari N, Yadav S. Modulation of protein oligomerization: An overview. Progress in Biophysics and Molecular Biology. PMID 30872157 DOI: 10.1016/j.pbiomolbio.2019.03.003   
2019 Yi L, Hu N, Mu H, Sun J, Yin J, Dai K, Xu F, Yang N, Ding D. Identification of Cofilin-1 and Destrin as Potential Early-warning Biomarkers for Gamma Radiation in Mouse Liver Tissues. Health Physics. PMID 30913056 DOI: 10.1097/HP.0000000000001012   
2019 Li Y, Tang R, Leung PSC, Gershwin ME, Ma X. Proteomics in Primary Biliary Cholangitis. Methods in Molecular Biology (Clifton, N.J.). 1981: 163-173. PMID 31016654 DOI: 10.1007/978-1-4939-9420-5_11   
2019 Wei Y, Li X, Zhang D, Liu Y. Comparison of protein differences between high- and low-quality goat and bovine parts based on iTRAQ technology. Food Chemistry. 289: 240-249. PMID 30955608 DOI: 10.1016/j.foodchem.2019.03.052   
2019 Kant K, Tomar AK, Sharma P, Kundu B, Singh S, Yadav S. Human epididymis protein 4 quantification and interaction network analysis in seminal plasma. Protein and Peptide Letters. PMID 30919767 DOI: 10.2174/0929866526666190327124919   
2019 Govaere L, Morin MD, Frigault JJ, Boquel S, Cohen A, Lamarre SG, Morin P. Transcriptome and proteome analyses to investigate the molecular underpinnings of cold response in the Colorado potato beetle, Leptinotarsa decemlineatas. Cryobiology. PMID 30946844 DOI: 10.1016/j.cryobiol.2019.03.011