101 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Dodds JN, Baker ES. Ion Mobility Spectrometry: Fundamental Concepts, Instrumentation, Applications, and the Road Ahead. Journal of the American Society For Mass Spectrometry. PMID 31493234 DOI: 10.1007/s13361-019-02288-2  1
2019 Zhang Y, Zhong Y, Connor AL, Miller DP, Cao R, Shen J, Song B, Baker ES, Tang Q, Pulavarti SVSRK, Liu R, Wang Q, Lu ZL, Szyperski T, Zeng H, et al. Folding and Assembly of Short α, β, γ-Hybrid Peptides: Minor Variations in Sequence and Drastic Differences in Higher-Level Structures. Journal of the American Chemical Society. PMID 31381306 DOI: 10.1021/jacs.9b06094  0.84
2019 Zheng X, Smith FB, Aly NA, Cai J, Smith RD, Patterson AD, Baker ES. Evaluating the structural complexity of isomeric bile acids with ion mobility spectrometry. Analytical and Bioanalytical Chemistry. PMID 31098744 DOI: 10.1007/s00216-019-01869-0  0.84
2019 Plante PL, Francovic-Fontaine É, May JC, McLean JA, Baker ES, Laviolette F, Marchand M, Corbeil J. Predicting Ion Mobility Collision Cross-Sections Using a Deep Neural Network: DeepCCS. Analytical Chemistry. PMID 30932474 DOI: 10.1021/acs.analchem.8b05821  0.36
2019 Monge ME, Dodds JN, Baker ES, Edison AS, Fernández FM. Challenges in Identifying the Dark Molecules of Life. Annual Review of Analytical Chemistry (Palo Alto, Calif.). PMID 30883183 DOI: 10.1146/annurev-anchem-061318-114959  1
2018 Zheng X, Dupuis KT, Aly NA, Zhou Y, Smith FB, Tang K, Smith RD, Baker ES. Utilizing ion mobility spectrometry and mass spectrometry for the analysis of polycyclic aromatic hydrocarbons, polychlorinated biphenyls, polybrominated diphenyl ethers and their metabolites. Analytica Chimica Acta. 1037: 265-273. PMID 30292301 DOI: 10.1016/j.aca.2018.02.054  0.84
2018 Nagy G, Attah IK, Garimella SVB, Tang K, Ibrahim YM, Baker ES, Smith RD. Unraveling the isomeric heterogeneity of glycans: ion mobility separations in structures for lossless ion manipulations. Chemical Communications (Cambridge, England). PMID 30264832 DOI: 10.1039/c8cc06966b  0.84
2018 Kedia K, Wendler JP, Baker ES, Burnum-Johnson KE, Jarsberg LG, Stratton KG, Wright AT, Piehowski PD, Gritsenko MA, Lewinsohn DM, Sigal GB, Weiner MH, Smith RD, Jacobs JM, Nahid P. Application of multiplexed ion mobility spectrometry towards the identification of host protein signatures of treatment effect in pulmonary tuberculosis. Tuberculosis (Edinburgh, Scotland). 112: 52-61. PMID 30205969 DOI: 10.1016/j.tube.2018.07.005  0.84
2018 Kyle JE, Clair G, Bandyopadhyay G, Misra RS, Zink EM, Bloodsworth KJ, Shukla AK, Du Y, Lillis J, Myers JR, Ashton J, Bushnell T, Cochran M, Deutsch G, Baker ES, et al. Cell type-resolved human lung lipidome reveals cellular cooperation in lung function. Scientific Reports. 8: 13455. PMID 30194354 DOI: 10.1038/s41598-018-31640-x  0.56
2018 Nagy G, Chouinard CD, Attah IK, Webb IK, Garimella SVB, Ibrahim YM, Baker ES, Smith RD. Distinguishing enantiomeric amino acids with chiral cyclodextrin adducts and structures for lossless ion manipulations. Electrophoresis. PMID 30168603 DOI: 10.1002/elps.201800294  0.84
2018 Chouinard CD, Nagy G, Webb IK, Shi T, Baker ES, Prost SA, Liu T, Ibrahim YM, Smith RD. Improved Sensitivity and Separations for Phosphopeptides using Online LC Coupled with Structures for Lossless Ion Manipulations (SLIM) IM-MS. Analytical Chemistry. PMID 30118596 DOI: 10.1021/acs.analchem.8b02397  0.84
2018 Chouinard CD, Nagy G, Webb IK, Garimella SVB, Baker ES, Ibrahim YM, Smith RD. Rapid Ion Mobility Separations of Bile Acid Isomers using Cyclodextrin Adducts and Structures for Lossless Ion Manipulations. Analytical Chemistry. PMID 30102518 DOI: 10.1021/acs.analchem.8b02990  0.84
2018 MacLean BX, Pratt BS, Egertson JD, MacCoss MJ, Smith RD, Baker ES. Using Skyline to Analyze Data-Containing Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry Dimensions. Journal of the American Society For Mass Spectrometry. PMID 30047074 DOI: 10.1007/s13361-018-2028-5  0.84
2018 Nicora CD, Burnum-Johnson KE, Nakayasu ES, Casey CP, White RA, Roy Chowdhury T, Kyle JE, Kim YM, Smith RD, Metz TO, Jansson JK, Baker ES. The MPLEx Protocol for Multi-omic Analyses of Soil Samples. Journal of Visualized Experiments : Jove. PMID 29912205 DOI: 10.3791/57343  0.84
2018 Bilbao A, Gibbons BC, Slysz GW, Crowell KL, Monroe ME, Ibrahim YM, Smith RD, Payne SH, Baker ES. An algorithm to correct saturated mass spectrometry ion abundances for enhanced quantitation and mass accuracy in omic studies. International Journal of Mass Spectrometry. 427: 91-99. PMID 29706793 DOI: 10.1016/j.ijms.2017.11.003  0.84
2018 Kyle JE, Aly N, Zheng X, Burnum-Johnson KE, Smith RD, Baker ES. Evaluating lipid mediator structural complexity using ion mobility spectrometry combined with mass spectrometry. Bioanalysis. PMID 29494212 DOI: 10.4155/bio-2017-0245  0.84
2018 Orwoll ES, Wiedrick J, Jacobs J, Baker ES, Piehowski P, Petyuk V, Gao Y, Shi T, Smith RD, Bauer DC, Cummings SR, Nielson CM, Lapidus J. High-throughput serum proteomics for the identification of protein biomarkers of mortality in older men. Aging Cell. PMID 29399943 DOI: 10.1111/acel.12717  0.84
2017 Zheng X, Aly NA, Zhou Y, Dupuis KT, Bilbao A, Paurus VL, Orton DJ, Wilson R, Payne SH, Smith RD, Baker ES. A structural examination and collision cross section database for over 500 metabolites and xenobiotics using drift tube ion mobility spectrometry. Chemical Science. 8: 7724-7736. PMID 29568436 DOI: 10.1039/c7sc03464d  0.84
2017 Zheng X, Smith RD, Baker ES. Recent advances in lipid separations and structural elucidation using mass spectrometry combined with ion mobility spectrometry, ion-molecule reactions and fragmentation approaches. Current Opinion in Chemical Biology. 42: 111-118. PMID 29223060 DOI: 10.1016/j.cbpa.2017.11.009  0.84
2017 Poad BLJ, Zheng X, Mitchell TW, Smith RD, Baker ES, Blanksby SJ. Online ozonolysis combined with ion mobility-mass spectrometry provides a new platform for lipid isomer analyses. Analytical Chemistry. PMID 29220163 DOI: 10.1021/acs.analchem.7b04091  0.84
2017 Orton DJ, Tfaily MM, Moore RJ, LaMarche BL, Zheng X, Fillmore TL, Chu RK, Weitz KK, Monroe ME, Kelly RT, Smith RD, Baker ES. A Customizable Flow Injection System for Automated, High Throughput and Time Sensitive Ion Mobility Spectrometry and Mass Spectrometry Measurements. Analytical Chemistry. PMID 29161511 DOI: 10.1021/acs.analchem.7b02986  0.84
2017 Garabedian A, Benigni P, Ramirez CE, Baker ES, Liu T, Smith RD, Fernandez-Lima F. Towards Discovery and Targeted Peptide Biomarker Detection Using nanoESI-TIMS-TOF MS. Journal of the American Society For Mass Spectrometry. PMID 28889248 DOI: 10.1007/s13361-017-1787-8  0.84
2017 Stow SM, Causon T, Zheng X, Kurulugama RT, Mairinger T, May JC, Rennie EE, Baker ES, Smith RD, McLean JA, Hann S, Fjeldsted JC. An Interlaboratory Evaluation of Drift Tube Ion Mobility - Mass Spectrometry Collision Cross Section Measurements. Analytical Chemistry. PMID 28763190 DOI: 10.1021/acs.analchem.7b01729  0.84
2017 Zheng X, Deng L, Baker ES, Ibrahim YM, Petyuk VA, Smith RD. Distinguishing d- and l-aspartic and isoaspartic acids in amyloid β peptides with ultrahigh resolution ion mobility spectrometry. Chemical Communications (Cambridge, England). PMID 28654112 DOI: 10.1039/c7cc03321d  0.84
2017 Ma J, Casey CP, Zheng X, Ibrahim YM, Wilkins CS, Renslow RS, Thomas DG, Payne SH, Monroe ME, Smith RD, Teeguarden JG, Baker ES, Metz TO. PIXiE: An Algorithm for Automated Ion Mobility Arrival Time Extraction and Collision Cross Section Calculation using Global Data Association. Bioinformatics (Oxford, England). PMID 28505286 DOI: 10.1093/bioinformatics/btx305  0.84
2017 Deng L, Garimella SVB, Hamid AM, Webb IK, Attah IK, Norheim RV, Prost SA, Zheng X, Sandoval JA, Baker ES, Ibrahim YM, Smith RD. CRIMP Accumulation and Compression of Billions of Ions for Ion Mobility-MS using Traveling Waves in Structures for Lossless Ion Manipulations. Analytical Chemistry. PMID 28497957 DOI: 10.1021/acs.analchem.7b00189  0.84
2017 Burnum-Johnson KE, Baker ES, Metz TO. Characterizing the lipid and metabolite changes associated with placental function and pregnancy complications using ion mobility spectrometry-mass spectrometry and mass spectrometry imaging. Placenta. PMID 28392013 DOI: 10.1016/j.placenta.2017.03.016  0.64
2017 Deng L, Webb IK, Garimella SV, Hamid AM, Zheng X, Norheim RV, Prost SA, Anderson GA, Sandoval JA, Baker ES, Ibrahim YM, Smith RD. Serpentine Ultra-long Path with Extended Routing (SUPER) High Resolution Traveling Wave Ion Mobility-MS using Structures for Lossless Ion Manipulations. Analytical Chemistry. PMID 28332832 DOI: 10.1021/acs.analchem.7b00185  0.84
2017 Nielson CM, Wiedrick J, Shen J, Jacobs J, Baker ES, Baraff A, Piehowski P, Lee CG, Baratt A, Petyuk V, McWeeney S, Lim JY, Bauer DC, Lane NE, Cawthon PM, et al. Identification of Hip BMD Loss and Fracture Risk Markers through Population-based Serum Proteomics. Journal of Bone and Mineral Research : the Official Journal of the American Society For Bone and Mineral Research. PMID 28316103 DOI: 10.1002/jbmr.3125  0.84
2017 Zheng X, Wojcik R, Zhang X, Ibrahim YM, Burnum-Johnson KE, Orton DJ, Monroe ME, Moore RJ, Smith RD, Baker ES. Coupling Front-End Separations, Ion Mobility Spectrometry, and Mass Spectrometry for Enhanced Multidimensional Biological and Environmental Analyses. Annual Review of Analytical Chemistry (Palo Alto, Calif.). PMID 28301728 DOI: 10.1146/annurev-anchem-061516-045212  0.84
2017 Zheng X, Renslow RS, Makola MM, Webb IK, Deng L, Thomas DG, Govind N, Ibrahim YM, Kabanda MM, Dubery IA, Heyman HM, Smith RD, Madala NE, Baker ES. Structural Elucidation of cis/trans Dicaffeoylquinic Acid Photoisomerization Using Ion Mobility Spectrometry-Mass Spectrometry. The Journal of Physical Chemistry Letters. PMID 28267339 DOI: 10.1021/acs.jpclett.6b03015  0.84
2017 Ibrahim YM, Hamid AM, Deng L, Garimella SV, Webb IK, Baker ES, Smith RD. New frontiers for mass spectrometry based upon structures for lossless ion manipulations. The Analyst. PMID 28262893 DOI: 10.1039/c7an00031f  0.84
2017 Wojcik R, Webb IK, Deng L, Garimella SV, Prost SA, Ibrahim YM, Baker ES, Smith RD. Lipid and Glycolipid Isomer Analyses Using Ultra-High Resolution Ion Mobility Spectrometry Separations. International Journal of Molecular Sciences. 18. PMID 28106768 DOI: 10.3390/ijms18010183  0.84
2017 Metz TO, Baker ES, Schymanski EL, Renslow RS, Thomas DG, Causon TJ, Webb IK, Hann S, Smith RD, Teeguarden JG. Integrating ion mobility spectrometry into mass spectrometry-based exposome measurements: what can it add and how far can it go? Bioanalysis. 9: 81-98. PMID 27921453 DOI: 10.4155/bio-2016-0244  0.84
2016 Zhang X, Romm M, Zheng X, Zink EM, Kim YM, Burnum-Johnson KE, Orton DJ, Apffel A, Ibrahim YM, Monroe ME, Moore RJ, Smith JN, Ma J, Renslow RS, Thomas DG, ... ... Baker ES, et al. SPE-IMS-MS: An automated platform for sub-sixty second surveillance of endogenous metabolites and xenobiotics in biofluids. Clinical Mass Spectrometry (Del Mar, Calif.). 2: 1-10. PMID 29276770 DOI: 10.1016/j.clinms.2016.11.002  0.84
2016 Deng L, Ibrahim YM, Baker ES, Aly NA, Hamid AM, Zhang X, Zheng X, Garimella SVB, Webb IK, Prost SA, Sandoval JA, Norheim RV, Anderson GA, Tolmachev AV, Smith RD. Ion Mobility Separations of Isomers based upon Long Path Length Structures for Lossless Ion Manipulations Combined with Mass Spectrometry. Chemistryselect. 1: 2396-2399. PMID 28936476 DOI: 10.1002/slct.201600460  0.84
2016 Ibrahim YM, Garimella SV, Prost SA, Wojcik R, Norheim RV, Baker ES, Rusyn I, Smith RD. Development of an Ion Mobility Spectrometry-Orbitrap Mass Spectrometer Platform. Analytical Chemistry. 88: 12152-12160. PMID 28193022 DOI: 10.1021/acs.analchem.6b03027  0.84
2016 Kyle JE, Casey CP, Stratton KG, Zink EM, Kim YM, Zheng X, Monroe ME, Weitz KK, Bloodsworth KJ, Orton DJ, Ibrahim YM, Moore RJ, Lee CG, Pedersen C, Orwoll E, ... ... Baker ES, et al. Comparing Identified and Statistically Significant Lipids and Polar Metabolites in 15-Year Old Serum and Dried Blood Spot Samples for Longitudinal Studies. Rapid Communications in Mass Spectrometry : Rcm. PMID 27958645 DOI: 10.1002/rcm.7808  0.84
2016 Garimella SV, Hamid AM, Deng L, Ibrahim YM, Webb IK, Baker ES, Prost SA, Norheim RV, Anderson GA, Smith RD. Squeezing of Ion Populations and Peaks in Traveling Wave Ion Mobility Separations and Structures for Lossless Ion Manipulations Using Compression Ratio Ion Mobility Programming. Analytical Chemistry. 88: 11877-11885. PMID 27934097 DOI: 10.1021/acs.analchem.6b03660  0.84
2016 Deng L, Ibrahim YM, Garimella SV, Webb IK, Hamid AM, Norheim RV, Prost SA, Sandoval JA, Baker ES, Smith RD. Greatly Increasing Trapped Ion Populations for Mobility Separations Using Traveling Waves in Structures for Lossless Ion Manipulations. Analytical Chemistry. PMID 27715008 DOI: 10.1021/acs.analchem.6b02678  0.84
2016 Khadempour L, Burnum-Johnson KE, Baker ES, Nicora CD, Webb-Robertson BM, White RA, Monroe ME, Huang EL, Smith RD, Currie CR. The fungal cultivar of leaf-cutter ants produces specific enzymes in response to different plant substrates. Molecular Ecology. PMID 27696597 DOI: 10.1111/mec.13872  0.84
2016 Burnum-Johnson KE, Nie S, Casey CP, Monroe ME, Orton DJ, Ibrahim YM, Gritsenko MA, Clauss TR, Shukla AK, Moore RJ, Purvine SO, Shi T, Qian W, Liu T, Baker ES, et al. Simultaneous Proteomic Discovery and Targeted Monitoring using Liquid Chromatography, Ion Mobility Spectrometry and Mass Spectrometry. Molecular & Cellular Proteomics : McP. PMID 27670688 DOI: 10.1074/mcp.M116.061143  0.84
2016 Zheng X, Zhang X, Schocker NS, Renslow RS, Orton DJ, Khamsi J, Ashmus RA, Almeida IC, Tang K, Costello CE, Smith RD, Michael K, Baker ES. Enhancing glycan isomer separations with metal ions and positive and negative polarity ion mobility spectrometry-mass spectrometry analyses. Analytical and Bioanalytical Chemistry. PMID 27604268 DOI: 10.1007/s00216-016-9866-4  1
2016 Deng L, Ibrahim YM, Hamid AM, Garimella SV, Webb IK, Zheng X, Prost SA, Sandoval JA, Norheim RV, Anderson GA, Tolmachev AV, Baker ES, Smith RD. Ultra-High Resolution Ion Mobility Separations Utilizing Traveling Waves in a 13-m Serpentine Path Length Structures for Lossless Ion Manipulations Module. Analytical Chemistry. PMID 27531027 DOI: 10.1021/acs.analchem.6b01915  1
2016 Hamid AM, Garimella SV, Ibrahim YM, Deng L, Zheng X, Webb IK, Anderson GA, Prost SA, Norheim RV, Tolmachev AV, Baker ES, Smith RD. Achieving high resolution ion mobility separations using traveling waves in compact multi-turn Structures for Lossless Ion Manipulations. Analytical Chemistry. PMID 27479234 DOI: 10.1021/acs.analchem.6b01914  1
2016 Rosnow JJ, Anderson LN, Nair RN, Baker ES, Wright AT. Profiling microbial lignocellulose degradation and utilization by emergent omics technologies. Critical Reviews in Biotechnology. 1-15. PMID 27439855 DOI: 10.1080/07388551.2016.1209158  1
2016 Webb IK, Garimella SV, Norheim RV, Baker ES, Ibrahim YM, Smith RD. A Structures for Lossless Ion Manipulations (SLIM) Module for Collision Induced Dissociation. Journal of the American Society For Mass Spectrometry. PMID 27098413 DOI: 10.1007/s13361-016-1397-x  1
2016 Garimella SV, Ibrahim YM, Tang K, Webb IK, Baker ES, Tolmachev AV, Chen TC, Anderson GA, Smith RD. Spatial Ion Peak Compression and its Utility in Ion Mobility Spectrometry. Journal of the American Society For Mass Spectrometry. PMID 27052738 DOI: 10.1007/s13361-016-1371-7  1
2016 Cong Y, Katipamula S, Trader CD, Orton DJ, Geng T, Baker ES, Kelly RT. Mass spectrometry-based monitoring of millisecond protein-ligand binding dynamics using an automated microfluidic platform. Lab On a Chip. PMID 27009517 DOI: 10.1039/c6lc00183a  1
2016 Liu R, Chen S, Baker ES, Smith RD, Zeng XC, Gong B. Correction: Surprising impact of remote groups on the folding-unfolding and dimer-chain equilibria of bifunctional H-bonding unimers. Chemical Communications (Cambridge, England). PMID 27003741 DOI: 10.1039/c6cc90142e  0.84
2016 Liu R, Cheng S, Baker ES, Smith RD, Zeng XC, Gong B. Surprising impact of remote groups on the folding-unfolding and dimer-chain equilibria of bifunctional H-bonding unimers. Chemical Communications (Cambridge, England). PMID 26830456 DOI: 10.1039/c6cc00224b  1
2016 Chen TC, Ibrahim YM, Webb IK, Garimella SV, Zhang X, Hamid AM, Deng L, Karnesky WE, Prost SA, Sandoval JA, Norheim RV, Anderson GA, Tolmachev AV, Baker ES, Smith RD. Mobility-Selected Ion Trapping and Enrichment Using Structures for Lossless Ion Manipulations. Analytical Chemistry. PMID 26752262 DOI: 10.1021/acs.analchem.5b03910  1
2016 Kyle JE, Zhang X, Weitz KK, Monroe ME, Ibrahim YM, Moore RJ, Cha J, Sun X, Lovelace ES, Wagoner J, Polyak SJ, Metz TO, Dey SK, Smith RD, Burnum-Johnson KE, ... Baker ES, et al. Uncovering biologically significant lipid isomers with liquid chromatography, ion mobility spectrometry and mass spectrometry. The Analyst. PMID 26734689 DOI: 10.1039/c5an02062j  1
2015 Garimella SV, Ibrahim YM, Webb IK, Ipsen AB, Chen TC, Tolmachev AV, Baker ES, Anderson GA, Smith RD. Ion manipulations in structures for lossless ion manipulations (SLIM): computational evaluation of a 90° turn and a switch. The Analyst. 140: 6845-52. PMID 26289106 DOI: 10.1039/c5an00844a  1
2015 Ibrahim YM, Baker ES, Danielson WF, Norheim RV, Prior DC, Anderson GA, Belov ME, Smith RD. Development of a New Ion Mobility (Quadrupole) Time-of-Flight Mass Spectrometer. International Journal of Mass Spectrometry. 377: 655-662. PMID 26185483 DOI: 10.1016/j.ijms.2014.07.034  1
2015 Zhang X, Ibrahim YM, Chen TC, Kyle JE, Norheim RV, Monroe ME, Smith RD, Baker ES. Enhancing biological analyses with three dimensional field asymmetric ion mobility, low field drift tube ion mobility and mass spectrometry (μFAIMS/IMS-MS) separations. The Analyst. PMID 26140287 DOI: 10.1039/c5an00897b  1
2015 Baker ES, Burnum-Johnson KE, Ibrahim YM, Orton DJ, Monroe ME, Kelly RT, Moore RJ, Zhang X, Théberge R, Costello CE, Smith RD. Enhancing bottom-up and top-down proteomic measurements with ion mobility separations. Proteomics. PMID 26046661 DOI: 10.1002/pmic.201500048  1
2015 Zhang X, Garimella SV, Prost SA, Webb IK, Chen TC, Tang K, Tolmachev AV, Norheim RV, Baker ES, Anderson GA, Ibrahim YM, Smith RD. Ion Trapping, Storage, and Ejection in Structures for Lossless Ion Manipulations. Analytical Chemistry. 87: 6010-6. PMID 25971536 DOI: 10.1021/acs.analchem.5b00214  1
2015 Cha J, Burnum-Johnson KE, Bartos A, Li Y, Baker ES, Tilton SC, Webb-Robertson BJ, Piehowski PD, Monroe ME, Jegga AG, Murata S, Hirota Y, Dey SK. Muscle Segment Homeobox Genes Direct Embryonic Diapause by Limiting Inflammation in the Uterus. The Journal of Biological Chemistry. 290: 15337-49. PMID 25931120 DOI: 10.1074/jbc.M115.655001  1
2015 Wu C, Liu T, Baker ES, Rodland KD, Smith RD. Mass spectrometry for biomarker development General Methods in Biomarker Research and Their Applications. 1: 17-48. DOI: 10.1007/978-94-007-7696-8_21  1
2014 Baker ES, Muddiman DC, Loo JA. Focus on advancing high performance mass spectrometry, honoring dr. Richard d. Smith, recipient of the 2013 award for a distinguished contribution in mass spectrometry. Journal of the American Society For Mass Spectrometry. 25: 1997-9. PMID 25326057 DOI: 10.1007/s13361-014-1007-8  0.48
2014 Prost SA, Crowell KL, Baker ES, Ibrahim YM, Clowers BH, Monroe ME, Anderson GA, Smith RD, Payne SH. Detecting and removing data artifacts in Hadamard transform ion mobility-mass spectrometry measurements. Journal of the American Society For Mass Spectrometry. 25: 2020-7. PMID 24796262 DOI: 10.1007/s13361-014-0895-y  1
2014 Ibrahim YM, Garimella SV, Tolmachev AV, Baker ES, Smith RD. Improving ion mobility measurement sensitivity by utilizing helium in an ion funnel trap. Analytical Chemistry. 86: 5295-9. PMID 24786390 DOI: 10.1021/ac404250z  1
2014 Baker ES, Burnum-Johnson KE, Jacobs JM, Diamond DL, Brown RN, Ibrahim YM, Orton DJ, Piehowski PD, Purdy DE, Moore RJ, Danielson WF, Monroe ME, Crowell KL, Slysz GW, Gritsenko MA, et al. Advancing the high throughput identification of liver fibrosis protein signatures using multiplexed ion mobility spectrometry. Molecular & Cellular Proteomics : McP. 13: 1119-27. PMID 24403597 DOI: 10.1074/mcp.M113.034595  1
2013 Crowell KL, Baker ES, Payne SH, Ibrahim YM, Monroe ME, Slysz GW, LaMarche BL, Petyuk VA, Piehowski PD, Danielson WF, Anderson GA, Smith RD. Increasing Confidence of LC-MS Identifications by Utilizing Ion Mobility Spectrometry. International Journal of Mass Spectrometry. 354: 312-317. PMID 25089116 DOI: 10.1016/j.ijms.2013.06.028  1
2013 Venceslau SS, Cort JR, Baker ES, Chu RK, Robinson EW, Dahl C, Saraiva LM, Pereira IA. Redox states of Desulfovibrio vulgaris DsrC, a key protein in dissimilatory sulfite reduction. Biochemical and Biophysical Research Communications. 441: 732-6. PMID 24211572 DOI: 10.1016/j.bbrc.2013.10.116  1
2013 Crowell KL, Slysz GW, Baker ES, LaMarche BL, Monroe ME, Ibrahim YM, Payne SH, Anderson GA, Smith RD. LC-IMS-MS Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasets. Bioinformatics (Oxford, England). 29: 2804-5. PMID 24008421 DOI: 10.1093/bioinformatics/btt465  1
2013 Merkley ED, Baker ES, Crowell KL, Orton DJ, Taverner T, Ansong C, Ibrahim YM, Burnet MC, Cort JR, Anderson GA, Smith RD, Adkins JN. Mixed-isotope labeling with LC-IMS-MS for characterization of protein-protein interactions by chemical cross-linking. Journal of the American Society For Mass Spectrometry. 24: 444-9. PMID 23423792 DOI: 10.1007/s13361-012-0565-x  1
2012 Baker ES, Liu T, Petyuk VA, Burnum-Johnson KE, Ibrahim YM, Anderson GA, Smith RD. Mass spectrometry for translational proteomics: progress and clinical implications. Genome Medicine. 4: 63. PMID 22943415 DOI: 10.1186/gm364  1
2012 Hengel SM, Floyd E, Baker ES, Zhao R, Wu S, Paša-Toli? L. Evaluation of SDS depletion using an affinity spin column and IMS-MS detection. Proteomics. 12: 3138-42. PMID 22936678 DOI: 10.1002/pmic.201200168  1
2012 Burnum KE, Hirota Y, Baker ES, Yoshie M, Ibrahim YM, Monroe ME, Anderson GA, Smith RD, Daikoku T, Dey SK. Uterine deletion of Trp53 compromises antioxidant responses in the mouse decidua. Endocrinology. 153: 4568-79. PMID 22759378 DOI: 10.1210/en.2012-1335  1
2012 Angel TE, Aryal UK, Hengel SM, Baker ES, Kelly RT, Robinson EW, Smith RD. Mass spectrometry-based proteomics: existing capabilities and future directions. Chemical Society Reviews. 41: 3912-28. PMID 22498958 DOI: 10.1039/c2cs15331a  1
2010 Buchko GW, Niemann G, Baker ES, Belov ME, Smith RD, Heffron F, Adkins JN, McDermott JE. A multi-pronged search for a common structural motif in the secretion signal of Salmonella enterica serovar Typhimurium type III effector proteins. Molecular Biosystems. 6: 2448-58. PMID 20877914 DOI: 10.1039/c0mb00097c  1
2010 Ibrahim YM, Prior DC, Baker ES, Smith RD, Belov ME. Characterization of an Ion Mobility-Multiplexed Collision Induced Dissociation-Tandem Time-of-Flight Mass Spectrometry Approach. International Journal of Mass Spectrometry. 293: 34-44. PMID 20596241 DOI: 10.1016/j.ijms.2010.03.009  1
2010 Shah AR, Agarwal K, Baker ES, Singhal M, Mayampurath AM, Ibrahim YM, Kangas LJ, Monroe ME, Zhao R, Belov ME, Anderson GA, Smith RD. Machine learning based prediction for peptide drift times in ion mobility spectrometry. Bioinformatics (Oxford, England). 26: 1601-7. PMID 20495001 DOI: 10.1093/bioinformatics/btq245  1
2010 Baker ES, Livesay EA, Orton DJ, Moore RJ, Danielson WF, Prior DC, Ibrahim YM, LaMarche BL, Mayampurath AM, Schepmoes AA, Hopkins DF, Tang K, Smith RD, Belov ME. An LC-IMS-MS platform providing increased dynamic range for high-throughput proteomic studies. Journal of Proteome Research. 9: 997-1006. PMID 20000344 DOI: 10.1021/pr900888b  1
2009 Page JS, Marginean I, Baker ES, Kelly RT, Tang K, Smith RD. Biases in ion transmission through an electrospray ionization-mass spectrometry capillary inlet. Journal of the American Society For Mass Spectrometry. 20: 2265-72. PMID 19815425 DOI: 10.1016/j.jasms.2009.08.018  1
2009 Baker ES, Dupuis NF, Bowers MT. DNA hairpin, pseudoknot, and cruciform stability in a solvent-free environment. The Journal of Physical Chemistry. B. 113: 1722-7. PMID 19193169 DOI: 10.1021/jp807529m  1
2009 Baker ES, Dupuis NF, Bowers MT. Aminoglycoside antibiotics: A-site specific binding to 16S International Journal of Mass Spectrometry. 283: 105-111. DOI: 10.1016/j.ijms.2009.02.010  1
2008 Metz TO, Page JS, Baker ES, Tang K, Ding J, Shen Y, Smith RD. High Resolution Separations and Improved Ion Production and Transmission in Metabolomics. Trends in Analytical Chemistry : Trac. 27: 205-214. PMID 19255623 DOI: 10.1016/j.trac.2007.11.003  1
2008 Smargiasso N, Rosu F, Hsia W, Colson P, Baker ES, Bowers MT, De Pauw E, Gabelica V. G-quadruplex DNA assemblies: loop length, cation identity, and multimer formation. Journal of the American Chemical Society. 130: 10208-16. PMID 18627159 DOI: 10.1021/ja801535e  1
2008 Baker ES, Tang K, Danielson WF, Prior DC, Smith RD. Simultaneous fragmentation of multiple ions using IMS drift time dependent collision energies. Journal of the American Society For Mass Spectrometry. 19: 411-9. PMID 18226544 DOI: 10.1016/j.jasms.2007.11.018  1
2007 Baker ES, Clowers BH, Li F, Tang K, Tolmachev AV, Prior DC, Belov ME, Smith RD. Ion mobility spectrometry-mass spectrometry performance using electrodynamic ion funnels and elevated drift gas pressures. Journal of the American Society For Mass Spectrometry. 18: 1176-87. PMID 17512752 DOI: 10.1016/j.jasms.2007.03.031  1
2007 Baker ES, Bowers MT. B-DNA helix stability in a solvent-free environment. Journal of the American Society For Mass Spectrometry. 18: 1188-95. PMID 17434745 DOI: 10.1016/j.jasms.2007.03.001  1
2007 Shvartsburg AA, Mashkevich SV, Baker ES, Smith RD. Optimization of algorithms for ion mobility calculations. The Journal of Physical Chemistry. A. 111: 2002-10. PMID 17300182 DOI: 10.1021/jp066953m  1
2007 Gabelica V, Baker ES, Teulade-Fichou MP, De Pauw E, Bowers MT. Stabilization and structure of telomeric and c-myc region intramolecular G-quadruplexes: the role of central cations and small planar ligands. Journal of the American Chemical Society. 129: 895-904. PMID 17243826 DOI: 10.1021/ja065989p  1
2006 Baker ES, Hong JW, Gaylord BS, Bazan GC, Bowers MT. PNA/dsDNA complexes: site specific binding and dsDNA biosensor applications. Journal of the American Chemical Society. 128: 8484-92. PMID 16802814 DOI: 10.1021/ja060069s  1
2006 Baker ES, Lee JT, Sessler JL, Bowers MT. Cyclo[n]pyrroles: size and site-specific binding to G-quadruplexes. Journal of the American Chemical Society. 128: 2641-8. PMID 16492050 DOI: 10.1021/ja0564968  1
2006 Baker ES, Bernstein SL, Gabelica V, De Pauw E, Bowers MT. G-quadruplexes in telomeric repeats are conserved in a solvent-free environment International Journal of Mass Spectrometry. 253: 225-237. DOI: 10.1016/j.ijms.2006.03.016  1
2005 Baker ES, Manard MJ, Gidden J, Bowers MT. Structural analysis of metal interactions with the dinucleotide duplex, dCG x dCG, using ion mobility mass spectrometry. The Journal of Physical Chemistry. B. 109: 4808-10. PMID 16863132 DOI: 10.1021/jp0501190  1
2005 Baker ES, Bushnell JE, Wecksler SR, Lim MD, Manard MJ, Dupuis NF, Ford PC, Bowers MT. Probing shapes of bichromophoric metal-organic complexes using ion mobility mass spectrometry. Journal of the American Chemical Society. 127: 18222-8. PMID 16366575 DOI: 10.1021/ja0553699  1
2005 Baker ES, Bernstein SL, Bowers MT. Structural characterization of G-quadruplexes in deoxyguanosine clusters using ion mobility mass spectrometry. Journal of the American Society For Mass Spectrometry. 16: 989-97. PMID 15908229 DOI: 10.1016/j.jasms.2005.03.012  1
2005 Anderson SE, Baker ES, Mitchell C, Haddad TS, Bowers MT. Structure of hybrid polyhedral oligomeric silsesquioxane propyl methacrylate oligomers using ion mobility mass spectrometry and molecular mechanics Chemistry of Materials. 17: 2537-2545. DOI: 10.1021/cm047868z  1
2005 Gidden J, Baker ES, Ferzoco A, Bowers MT. Structural motifs of DNA complexes in the gas phase International Journal of Mass Spectrometry. 240: 183-193. DOI: 10.1016/j.ijms.2004.09.011  1
2004 Gidden J, Ferzoco A, Baker ES, Bowers MT. Duplex formation and the onset of helicity in poly d(CG)n oligonucleotides in a solvent-free environment. Journal of the American Chemical Society. 126: 15132-40. PMID 15548010 DOI: 10.1021/ja046433+  1
2004 Baker ES, Hong JW, Gidden J, Bartholomew GP, Bazan GC, Bowers MT. Diastereomer assignment of an olefin-linked bis-paracyclophane by ion mobility mass spectrometry. Journal of the American Chemical Society. 126: 6255-7. PMID 15149222 DOI: 10.1021/ja039486k  1
2004 Baker ES, Gidden J, Ferzoco A, Bowers MT. Sodium stabilization of dinucleotide multiplexes in the gas phase Physical Chemistry Chemical Physics. 6: 2786-2795. DOI: 10.1039/b315727j  1
2004 Baker ES, Gidden J, Anderson SE, Haddad TS, Bowers MT. Isomeric structural characterization of polyhedral oligomeric silsesquioxanes (POSS) with styryl and epoxy phenyl capping agents Nano Letters. 4: 779-785. DOI: 10.1021/nl049957g  1
2004 Jackson AT, Scrivens JH, Williams JP, Baker ES, Gidden J, Bowers MT. Microstructural and conformational studies of polyether copolymers International Journal of Mass Spectrometry. 238: 287-297. DOI: 10.1016/j.ijms.2004.09.025  1
2004 Baker ES, Gidden J, Simonsick WJ, Grady MC, Bowers MT. Sequence dependent conformations of glycidyl methacrylate/butyl methacrylate copolymers in the gas phase International Journal of Mass Spectrometry. 238: 279-286. DOI: 10.1016/j.ijms.2004.04.020  1
2003 Baker ES, Gidden J, Fee DP, Kemper PR, Anderson SE, Bowers MT. 3-Dimensional structural characterization of cationized polyhedral oligomeric silsesquioxanes (POSS) with styryl and phenylethyl capping agents International Journal of Mass Spectrometry. 227: 205-216. DOI: 10.1016/S1387-3806(03)00068-X  1
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