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Michael Cianfrocco, Ph.D. - Publications

Affiliations: 
Biophysics University of California, Berkeley, Berkeley, CA, United States 
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18/50 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Cianfrocco M, Kellogg EH. What Could Go Wrong? A Practical Guide to Single-Particle Cryo-EM: From Biochemistry to Atomic Models. Journal of Chemical Information and Modeling. PMID 32078321 DOI: 10.1021/Acs.Jcim.9B01178  0.605
2018 Wang P, Tseng KF, Gao Y, Cianfrocco M, Guo L, Qiu W. The Central Stalk Determines the Motility of Mitotic Kinesin-14 Homodimers. Current Biology : Cb. PMID 30017487 DOI: 10.1016/J.Cub.2018.05.026  0.398
2018 Cianfrocco MA, Lahiri I, DiMaio F, Leschziner AE. cryoem-cloud-tools: A software platform to deploy and manage cryo-EM jobs in the cloud. Journal of Structural Biology. PMID 29864529 DOI: 10.2210/Pdb6Drv/Pdb  0.561
2018 Htet ZM, DeSantis ME, Cianfrocco MA, Tran PT, Leschziner AE, Reck-Peterson SL. Two Opposing Modes of Cytoplasmic Dynein Regulation by Lis1 Biophysical Journal. 114: 512a. DOI: 10.1016/J.Bpj.2017.11.2797  0.576
2018 Reck-Peterson S, Leschziner A, DeSantis M, Cianfrocco M, Min Htet Z, Tien Tran P. Mechanisms of Regulating Cytoplasmic Dynein Biophysical Journal. 114: 9a. DOI: 10.1016/J.Bpj.2017.11.088  0.62
2017 Xu J, Lahiri I, Wang W, Wier A, Cianfrocco MA, Chong J, Hare AA, Dervan PB, DiMaio F, Leschziner AE, Wang D. Structural basis for the initiation of eukaryotic transcription-coupled DNA repair. Nature. PMID 29168508 DOI: 10.1038/Nature24658  0.67
2017 DeSantis ME, Cianfrocco MA, Htet ZM, Tran PT, Reck-Peterson SL, Leschziner AE. Lis1 Has Two Opposing Modes of Regulating Cytoplasmic Dynein. Cell. 170: 1197-1208.e12. PMID 28886386 DOI: 10.1016/J.Cell.2017.08.037  0.646
2017 Cui J, Zhu Q, Zhang H, Cianfrocco MA, Leschziner AE, Dixon JE, Xiao J. Structure of Fam20A reveals a pseudokinase featuring unique disulfide pattern and inverted ATP-binding. Elife. 6. PMID 28432788 DOI: 10.7554/Elife.23990  0.601
2017 Coleman RA, Qiao Z, Singh SK, Peng CS, Cianfrocco M, Zhang Z, Piasecka A, Aldeborgh H, Basishvili G, Liu WL. p53 dynamically directs TFIID assembly on target gene promoters. Molecular and Cellular Biology. PMID 28416636 DOI: 10.1128/Mcb.00085-17  0.356
2017 Cianfrocco MA, DeSantis ME, Htet ZM, Tran PT, Leschziner AE, Reck-Peterson SL. Lis1 has Two Distinct Modes of Regulating Dynein's Mechanochemical Cycle Biophysical Journal. 112: 43a. DOI: 10.1016/J.Bpj.2016.11.274  0.642
2016 Coleman RA, Singh SK, Peng CS, Cianfrocco M, Zhang Z, Rice W, Eng E, Liu W. Nanoscale Probing of the p53 Tumor Suppression Transcription Machinery Biophysical Journal. 110: 232a. DOI: 10.1016/J.Bpj.2015.11.1278  0.37
2015 Cianfrocco MA, DeSantis ME, Leschziner AE, Reck-Peterson SL. Mechanism and Regulation of Cytoplasmic Dynein. Annual Review of Cell and Developmental Biology. PMID 26436706 DOI: 10.1146/Annurev-Cellbio-100814-125438  0.636
2015 Cianfrocco MA, Leschziner AE. Low cost, high performance processing of single particle cryo-electron microscopy data in the cloud. Elife. 4. PMID 25955969 DOI: 10.7554/Elife.06664  0.582
2014 Cianfrocco MA, Leschziner AE. Traffic control: adaptor proteins guide dynein-cargo takeoff. The Embo Journal. 33: 1845-6. PMID 25061224 DOI: 10.15252/Embj.201489450  0.606
2014 Piasecka A, Song L, Cianfrocco M, Wong V, Wang S, Hargitai J, Rice W, Nogales E, Coleman RA, Liu W. Structural and Dynamic Regulation of TFIID-Mediated Transcription Initiation Complex Assembly by the Tumor Suppressor P53 Protein Biophysical Journal. 106: 485a. DOI: 10.1016/J.Bpj.2013.11.4462  0.543
2013 Cianfrocco MA, Nogales E. Regulatory interplay between TFIID's conformational transitions and its modular interaction with core promoter DNA. Transcription. 4: 120-6. PMID 23863784 DOI: 10.4161/trns.25291  0.516
2013 Taylor DW, Ma E, Shigematsu H, Cianfrocco MA, Noland CL, Nagayama K, Nogales E, Doudna JA, Wang HW. Substrate-specific structural rearrangements of human Dicer. Nature Structural & Molecular Biology. 20: 662-70. PMID 23624860 DOI: 10.1038/Nsmb.2564  0.582
2013 Cianfrocco MA, Kassavetis GA, Grob P, Fang J, Juven-Gershon T, Kadonaga JT, Nogales E. Human TFIID binds to core promoter DNA in a reorganized structural state. Cell. 152: 120-31. PMID 23332750 DOI: 10.1016/J.Cell.2012.12.005  0.516
Low-probability matches (unlikely to be authored by this person)
2023 Tan Z, Yue Y, Leprevost F, Haynes S, Basrur V, Nesvizhskii AI, Verhey KJ, Cianfrocco MA. Autoinhibited kinesin-1 adopts a hierarchical folding pattern. Elife. 12. PMID 37910016 DOI: 10.7554/eLife.86776  0.276
2023 Tan Z, Yue Y, da Veiga Leprevost F, Haynes SE, Basrur V, Nesvizhskii AI, Verhey KJ, Cianfrocco MA. Autoinhibited kinesin-1 adopts a hierarchical folding pattern. Biorxiv : the Preprint Server For Biology. PMID 36747757 DOI: 10.1101/2023.01.26.525761  0.276
2020 Eberhardt EL, Ludlam AV, Tan Z, Cianfrocco MA. Miro: A molecular switch at the center of mitochondrial regulation. Protein Science : a Publication of the Protein Society. PMID 32056317 DOI: 10.1002/Pro.3839  0.253
2021 Solon AL, Tan Z, Schutt KL, Jepsen L, Haynes SE, Nesvizhskii AI, Sept D, Stumpff J, Ohi R, Cianfrocco MA. Kinesin-binding protein remodels the kinesin motor to prevent microtubule binding. Science Advances. 7: eabj9812. PMID 34797717 DOI: 10.1126/sciadv.abj9812  0.24
2022 Gicking AM, Ma TC, Feng Q, Jiang R, Badieyan S, Cianfrocco MA, Hancock WO. Kinesin-1, -2 and -3 motors use family-specific mechanochemical strategies to effectively compete with dynein during bidirectional transport. Elife. 11. PMID 36125250 DOI: 10.7554/eLife.82228  0.24
2022 Budaitis BG, Badieyan S, Yue Y, Blasius TL, Reinemann DN, Lang MJ, Cianfrocco MA, Verhey KJ. A kinesin-1 variant reveals motor-induced microtubule damage in cells. Current Biology : Cb. PMID 35504282 DOI: 10.1016/j.cub.2022.04.020  0.238
2019 Cash JN, Urata S, Li S, Ravala SK, Avramova LV, Shost MD, Gutkind JS, Tesmer JJG, Cianfrocco MA. Cryo-electron microscopy structure and analysis of the P-Rex1-Gβγ signaling scaffold. Science Advances. 5: eaax8855. PMID 31663027 DOI: 10.1126/sciadv.aax8855  0.236
2020 Li Y, Cianfrocco M. Automatic Pipeline for Cryo-EM Data Preprocessing Microscopy and Microanalysis. 26: 2324-2325. DOI: 10.1017/S1431927620021200  0.227
2019 Park SH, Ayoub A, Lee YT, Xu J, Kim H, Zheng W, Zhang B, Sha L, An S, Zhang Y, Cianfrocco MA, Su M, Dou Y, Cho US. Cryo-EM structure of the human MLL1 core complex bound to the nucleosome. Nature Communications. 10: 5540. PMID 31804488 DOI: 10.1038/S41467-019-13550-2  0.217
2017 Lu T, Cianfrocco M, Zhang P, Taylor S. Fusion Protein, DNAJB1-PRKACA, as a Cancer Driver Biophysical Journal. 112: 489a. DOI: 10.1016/J.Bpj.2016.11.2646  0.215
2021 Kearns S, Mason FM, Rathmell WK, Park IY, Walker C, Verhey KJ, Cianfrocco MA. Molecular determinants for α-tubulin methylation by SETD2. The Journal of Biological Chemistry. 100898. PMID 34157286 DOI: 10.1016/j.jbc.2021.100898  0.211
2020 Lu TW, Aoto PC, Weng JH, Nielsen C, Cash JN, Hall J, Zhang P, Simon SM, Cianfrocco MA, Taylor SS. Structural analyses of the PKA RIIβ holoenzyme containing the oncogenic DnaJB1-PKAc fusion protein reveal protomer asymmetry and fusion-induced allosteric perturbations in fibrolamellar hepatocellular carcinoma. Plos Biology. 18: e3001018. PMID 33370777 DOI: 10.1371/journal.pbio.3001018  0.209
2020 Seervai RNH, Jangid RK, Karki M, Tripathi DN, Jung SY, Kearns SE, Verhey KJ, Cianfrocco MA, Millis BA, Tyska MJ, Mason FM, Rathmell WK, Park IY, Dere R, Walker CL. The Huntingtin-interacting protein SETD2/HYPB is an actin lysine methyltransferase. Science Advances. 6. PMID 33008892 DOI: 10.1126/sciadv.abb7854  0.209
2019 Kearns S, Cianfrocco M, Verhey K. Reconstitution of Tubulin Methylation by SETD2 Microscopy and Microanalysis. 25: 1358-1359. DOI: 10.1017/S1431927619007529  0.209
2022 Ravala SK, Li S, Chen CL, Cianfrocco MA, Cash JN, Tesmer JJG. New insights into regulation of P-Rex1 autoinhibition. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. PMID 35552346 DOI: 10.1096/fasebj.2022.36.S1.R2794  0.202
2023 Ravala SK, Adame-Garcia SR, Li S, Chen CL, Cianfrocco MA, Gutkind JS, Cash JN, Tesmer JJG. Structural and dynamic changes in P-Rex1 upon activation by PIP and inhibition by IP. Biorxiv : the Preprint Server For Biology. PMID 37745379 DOI: 10.1101/2023.09.15.557836  0.191
2021 Hotta T, Haynes SE, Blasius TL, Gebbie M, Eberhardt EL, Sept D, Cianfrocco M, Verhey KJ, Nesvizhskii AI, Ohi R. Parthenolide Destabilizes Microtubules by Covalently Modifying Tubulin. Current Biology : Cb. PMID 33482110 DOI: 10.1016/j.cub.2020.11.055  0.19
2023 Wilhelm CA, Mallik L, Kelly AL, Brotzman S, Mendoza J, Anders AG, Leskaj S, Castillo C, Ruotolo BT, Cianfrocco MA, Koutmos M. Bacterial RNA-free RNase P: structural and functional characterization of multiple oligomeric forms of a minimal protein-only ribonuclease P. The Journal of Biological Chemistry. 105327. PMID 37806495 DOI: 10.1016/j.jbc.2023.105327  0.18
2023 Badieyan S, Lichon D, Andreas MP, Gillies JP, Peng W, Shi J, DeSantis ME, Aiken CR, Böcking T, Giessen TW, Campbell EM, Cianfrocco MA. HIV-1 binds dynein directly to hijack microtubule transport machinery. Biorxiv : the Preprint Server For Biology. PMID 37693451 DOI: 10.1101/2023.08.29.555335  0.168
2018 Cash JN, Ravala S, Tesmer JJ, Cianfrocco MA. Structural Snapshots of a Dynamic Process in the Regulation of P-Rex, a Metastatic Factor Microscopy and Microanalysis. 24: 1218-1219. DOI: 10.1017/s1431927618006578  0.166
2017 Baldwin PR, Tan YZ, Eng ET, Rice WJ, Noble AJ, Negro CJ, Cianfrocco MA, Potter CS, Carragher B. Big data in cryoEM: automated collection, processing and accessibility of EM data. Current Opinion in Microbiology. 43: 1-8. PMID 29100109 DOI: 10.1016/J.Mib.2017.10.005  0.161
2021 Koenning M, Wang X, Karki M, Jangid RK, Kearns S, Tripathi DN, Cianfrocco M, Verhey KJ, Jung SY, Coarfa C, Ward CS, Kalish BT, Grimm SL, Rathmell WK, Mostany R, et al. Neuronal SETD2 activity links microtubule methylation to an anxiety-like phenotype in mice. Brain : a Journal of Neurology. PMID 34014281 DOI: 10.1093/brain/awab200  0.161
2015 Ciferri C, Chandramouli S, Donnarumma D, Nikitin PA, Cianfrocco MA, Gerrein R, Feire AL, Barnett SW, Lilja AE, Rappuoli R, Norais N, Settembre EC, Carfi A. Structural and biochemical studies of HCMV gH/gL/gO and Pentamer reveal mutually exclusive cell entry complexes. Proceedings of the National Academy of Sciences of the United States of America. 112: 1767-72. PMID 25624487 DOI: 10.1073/Pnas.1424818112  0.154
2020 Park SH, Ayoub A, Lee YT, Xu J, Kim H, Zheng W, Zhang B, Sha L, An S, Zhang Y, Cianfrocco MA, Su M, Dou Y, Cho US. Publisher Correction: Cryo-EM structure of the human MLL1 core complex bound to the nucleosome. Nature Communications. 11: 1165. PMID 32109228 DOI: 10.1038/S41467-020-14973-Y  0.152
2020 Spriggs CC, Badieyan S, Verhey KJ, Cianfrocco MA, Tsai B. Golgi-associated BICD adaptors couple ER membrane penetration and disassembly of a viral cargo. The Journal of Cell Biology. 219. PMID 32259203 DOI: 10.1083/Jcb.201908099  0.149
2021 Li Y, Cianfrocco MA. Cloud computing platforms to support cryo-EM structure determination. Trends in Biochemical Sciences. PMID 34895958 DOI: 10.1016/j.tibs.2021.11.005  0.144
2020 Li Y, Cash JN, Tesmer JJG, Cianfrocco MA. High-Throughput Cryo-EM Enabled by User-Free Preprocessing Routines. Structure (London, England : 1993). PMID 32294468 DOI: 10.1016/j.str.2020.03.008  0.127
2019 Cianfrocco MA. Cloud computing tools for training the next generation of cryo-EM structural biologists Acta Crystallographica Section a Foundations and Advances. 75: a210-a210. DOI: 10.1107/s0108767319097939  0.115
2021 Li L, Conradson DM, Bharat V, Kim MJ, Hsieh CH, Minhas PS, Papakyrikos AM, Durairaj AS, Ludlam A, Andreasson KI, Partridge L, Cianfrocco MA, Wang X. A mitochondrial membrane-bridging machinery mediates signal transduction of intramitochondrial oxidation. Nature Metabolism. PMID 34504353 DOI: 10.1038/s42255-021-00443-2  0.114
2015 Ciferri C, Chandramouli S, Leitner A, Donnarumma D, Cianfrocco MA, Gerrein R, Friedrich K, Aggarwal Y, Palladino G, Aebersold R, Norais N, Settembre EC, Carfi A. Antigenic Characterization of the HCMV gH/gL/gO and Pentamer Cell Entry Complexes Reveals Binding Sites for Potently Neutralizing Human Antibodies. Plos Pathogens. 11: e1005230. PMID 26485028 DOI: 10.1371/Journal.Ppat.1005230  0.11
2020 Cash JN, Kearns S, Li Y, Cianfrocco MA. High-resolution cryo-EM using beam-image shift at 200 keV. Iucrj. 7: 1179-1187. PMID 33209328 DOI: 10.1107/S2052252520013482  0.102
2019 Li Y, Cianfrocco MA. Building a Data-driven Workflow to Streamline Cryo-EM Data Processing Microscopy and Microanalysis. 25: 1366-1367. DOI: 10.1017/S1431927619007566  0.093
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