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Hazen Porter Babcock - Publications

Affiliations: 
2001 Stanford University, Palo Alto, CA 
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42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Babcock HP, Huang F, Speer CM. Correcting Artifacts in Single Molecule Localization Microscopy Analysis Arising from Pixel Quantum Efficiency Differences in sCMOS Cameras. Scientific Reports. 9: 18058. PMID 31792238 DOI: 10.1038/S41598-019-53698-X  0.302
2019 Xia C, Babcock HP, Moffitt JR, Zhuang X. Multiplexed detection of RNA using MERFISH and branched DNA amplification. Scientific Reports. 9: 7721. PMID 31118500 DOI: 10.1038/S41598-019-43943-8  0.524
2019 Wang C, Lu T, Emanuel G, Babcock HP, Zhuang X. Imaging-based pooled CRISPR screening reveals regulators of lncRNA localization. Proceedings of the National Academy of Sciences of the United States of America. PMID 31085639 DOI: 10.1073/Pnas.1903808116  0.498
2018 Babcock HP. Multiplane and Spectrally-Resolved Single Molecule Localization Microscopy with Industrial Grade CMOS cameras. Scientific Reports. 8: 1726. PMID 29379074 DOI: 10.1038/S41598-018-19981-Z  0.327
2017 Wang Y, Jia S, Zhang HF, Kim D, Babcock H, Zhuang X, Ying L. Blind sparse inpainting reveals cytoskeletal filaments with sub-Nyquist localization. Optica. 4: 1277-1284. PMID 30320156 DOI: 10.1364/OPTICA.4.001277  0.474
2017 Chang JB, Chen F, Yoon YG, Jung EE, Babcock H, Kang JS, Asano S, Suk HJ, Pak N, Tillberg PW, Wassie AT, Cai D, Boyden ES. Iterative expansion microscopy. Nature Methods. PMID 28417997 DOI: 10.1038/Nmeth.4261  0.332
2017 Timashev LA, Babcock H, Zhuang X, de Lange T. The DDR at telomeres lacking intact shelterin does not require substantial chromatin decompaction. Genes & Development. PMID 28381412 DOI: 10.1101/Gad.294108.116  0.454
2017 Babcock HP, Zhuang X. Analyzing Single Molecule Localization Microscopy Data Using Cubic Splines. Scientific Reports. 7: 552. PMID 28373678 DOI: 10.1038/S41598-017-00622-W  0.498
2016 Moffitt JR, Hao J, Wang G, Chen KH, Babcock HP, Zhuang X. High-throughput single-cell gene-expression profiling with multiplexed error-robust fluorescence in situ hybridization. Proceedings of the National Academy of Sciences of the United States of America. PMID 27625426 DOI: 10.1073/Pnas.1612826113  0.533
2015 Sigal YM, Speer CM, Babcock HP, Zhuang X. Mapping Synaptic Input Fields of Neurons with Super-Resolution Imaging. Cell. 163: 493-505. PMID 26435106 DOI: 10.1016/J.Cell.2015.08.033  0.447
2015 Kim D, Deerinck TJ, Sigal YM, Babcock HP, Ellisman MH, Zhuang X. Correlative stochastic optical reconstruction microscopy and electron microscopy. Plos One. 10: e0124581. PMID 25874453 DOI: 10.1371/Journal.Pone.0124581  0.507
2014 Zhong G, He J, Zhou R, Lorenzo D, Babcock HP, Bennett V, Zhuang X. Developmental mechanism of the periodic membrane skeleton in axons. Elife. 3. PMID 25535840 DOI: 10.7554/Elife.04581  0.421
2014 Zhong G, He J, Zhou R, Lorenzo D, Babcock HP, Bennett V, Zhuang X. Author response: Developmental mechanism of the periodic membrane skeleton in axons Elife. DOI: 10.7554/Elife.04581.025  0.396
2013 Babcock HP, Moffitt JR, Cao Y, Zhuang X. Fast compressed sensing analysis for super-resolution imaging using L1-homotopy. Optics Express. 21: 28583-96. PMID 24514370 DOI: 10.1364/Oe.21.028583  0.517
2012 Babcock H, Sigal YM, Zhuang X. A high-density 3D localization algorithm for stochastic optical reconstruction microscopy. Optical Nanoscopy. 1. PMID 25431749 DOI: 10.1186/2192-2853-1-6  0.435
2012 Shim SH, Xia C, Zhong G, Babcock HP, Vaughan JC, Huang B, Wang X, Xu C, Bi GQ, Zhuang X. Super-resolution fluorescence imaging of organelles in live cells with photoswitchable membrane probes. Proceedings of the National Academy of Sciences of the United States of America. 109: 13978-83. PMID 22891300 DOI: 10.1073/Pnas.1201882109  0.508
2012 Mukamel EA, Babcock H, Zhuang X. Statistical deconvolution for superresolution fluorescence microscopy. Biophysical Journal. 102: 2391-400. PMID 22677393 DOI: 10.1016/J.Bpj.2012.03.070  0.535
2012 Lakadamyali M, Babcock H, Bates M, Zhuang X, Lichtman J. 3D multicolor super-resolution imaging offers improved accuracy in neuron tracing. Plos One. 7: e30826. PMID 22292051 DOI: 10.1371/Journal.Pone.0030826  0.507
2012 Xu K, Babcock HP, Zhuang X. Dual-objective STORM reveals three-dimensional filament organization in the actin cytoskeleton Nature Methods. 9: 185-188. PMID 22231642 DOI: 10.1038/Nmeth.1841  0.485
2012 Mukamel EA, Babcock H, Zhuang X. Sparse Statistical Deconvolution for High-Density Localization Microscopy Biophysical Journal. 102. DOI: 10.1016/J.Bpj.2011.11.3927  0.52
2010 Huang B, Babcock H, Zhuang X. Breaking the diffraction barrier: super-resolution imaging of cells. Cell. 143: 1047-58. PMID 21168201 DOI: 10.1016/J.Cell.2010.12.002  0.497
2010 Lakadamyali M, Bates M, Babcock H, Lichtman J, Zhuang X. Mapping Neuronal Connectivity Using Stochastic Optical Reconstruction Microscopy (Storm): The Brainstorm Project Biophysical Journal. 98: 214a. DOI: 10.1016/J.Bpj.2009.12.1153  0.452
2008 Harris TD, Buzby PR, Babcock H, Beer E, Bowers J, Braslavsky I, Causey M, Colonell J, Dimeo J, Efcavitch JW, Giladi E, Gill J, Healy J, Jarosz M, Lapen D, et al. Single-molecule DNA sequencing of a viral genome. Science (New York, N.Y.). 320: 106-9. PMID 18388294 DOI: 10.1126/Science.1150427  0.496
2005 Teixeira RE, Babcock HP, Shaqfeh ESG, Chu S. Shear thinning and tumbling dynamics of single polymers in the flow-gradient plane Macromolecules. 38: 581-592. DOI: 10.1021/Ma048077L  0.739
2004 Babcock HP, Chen C, Zhuang X. Using single-particle tracking to study nuclear trafficking of viral genes. Biophysical Journal. 87: 2749-2758. PMID 15454466 DOI: 10.1529/Biophysj.104.042234  0.463
2003 Schroeder CM, Babcock HP, Shaqfeh ES, Chu S. Observation of polymer conformation hysteresis in extensional flow. Science (New York, N.Y.). 301: 1515-9. PMID 12970560 DOI: 10.1126/Science.1086070  0.656
2003 Lakadamyali M, Rust MJ, Babcock HP, Zhuang X. Visualizing infection of individual influenza viruses. Proceedings of the National Academy of Sciences of the United States of America. 100: 9280-5. PMID 12883000 DOI: 10.1073/Pnas.0832269100  0.445
2003 Bokinsky G, Rueda D, Misra VK, Rhodes MM, Gordus A, Babcock HP, Walter NG, Zhuang X. Single-molecule transition-state analysis of RNA folding. Proceedings of the National Academy of Sciences of the United States of America. 100: 9302-7. PMID 12869691 DOI: 10.1073/Pnas.1133280100  0.499
2003 Babcock HP, Teixeira RE, Hur JS, Shaqfeh ESG, Chu S. Visualization of molecular fluctuations near the critical point of the coil-stretch transition in polymer elongation Macromolecules. 36: 4544-4548. DOI: 10.1021/Ma034073P  0.727
2002 Ha T, Rasnik I, Cheng W, Babcock HP, Gauss GH, Lohman TM, Chu S. Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase. Nature. 419: 638-41. PMID 12374984 DOI: 10.1038/Nature01083  0.585
2002 Hur JS, Shaqfeh ES, Babcock HP, Chu S. Dynamics and configurational fluctuations of single DNA molecules in linear mixed flows. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 66: 011915. PMID 12241392 DOI: 10.1103/Physreve.66.011915  0.516
2002 Zhuang X, Kim H, Pereira MJ, Babcock HP, Walter NG, Chu S. Correlating structural dynamics and function in single ribozyme molecules. Science (New York, N.Y.). 296: 1473-6. PMID 12029135 DOI: 10.1126/Science.1069013  0.668
2002 Russell R, Zhuang X, Babcock HP, Millett IS, Doniach S, Chu S, Herschlag D. Exploring the folding landscape of a structured RNA. Proceedings of the National Academy of Sciences of the United States of America. 99: 155-60. PMID 11756689 DOI: 10.1073/Pnas.221593598  0.577
2002 Hur JS, Shaqfeh ESG, Babcock HP, Chu S. Dynamics and configurational fluctuations of single DNA molecules in linear mixed flows Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 66: 011915/1-011915/4. DOI: 10.1103/PhysRevE.66.011915  0.469
2001 Hur JS, Shaqfeh ESG, Babcock HP, Smith DE, Chu S. Dynamics of dilute and semidilute DNA solutions in the start-up of shear flow Journal of Rheology. 45: 421-450. DOI: 10.1122/1.1339246  0.639
2001 Ha T, Zhuang X, Babcock H, Kim H, Orr JW, Williamson JR, Bartley L, Russell R, Herschlag D, Chu S. The Study of Single Biomolecules with Fluorescence Methods Springer Series in Chemical Physics. 67: 326-337. DOI: 10.1007/978-3-642-56544-1_19  0.574
2001 Ha T, Zhuang X, Babcock H, Kim H, Orr JW, Williamson JR, Bartley L, Russell R, Herschlag D, Chu S. The study of single biomolecules with fluorescence methods Springer Series in Chemical Physics. 67: 326-337.  0.536
2000 Babcock HP, Smith DE, Hur JS, Shaqfeh ES, Chu S. Relating the microscopic and macroscopic response of a polymeric fluid in a shearing flow. Physical Review Letters. 85: 2018-21. PMID 10970672 DOI: 10.1103/Physrevlett.85.2018  0.655
2000 Zhuang X, Bartley LE, Babcock HP, Russell R, Ha T, Herschlag D, Chu S. A single-molecule study of RNA catalysis and folding. Science (New York, N.Y.). 288: 2048-51. PMID 10856219 DOI: 10.1126/Science.288.5473.2048  0.672
2000 Zhuang X, Bartley L, Babcock H, Russell R, Ha T, Herschlag D, Chu S. Observing folding and catalysis of a single RNA enzyme molecule Pacific Rim Conference On Lasers and Electro-Optics, Cleo - Technical Digest. 588-589.  0.425
1999 Smith DE, Babcock HP, Chu S. Single-polymer dynamics in steady shear flow. Science (New York, N.Y.). 283: 1724-7. PMID 10073935 DOI: 10.1126/Science.283.5408.1724  0.66
1997 Quake SR, Babcock H, Chu S. The dynamics of partially extended single molecules of DNA. Nature. 388: 151-4. PMID 9217154 DOI: 10.1038/40588  0.608
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