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David M. McCandlish, Ph.D. - Publications

Affiliations: 
Biology Duke University, Durham, NC 
Area:
Paleobiology, Philosophy
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27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Gitschlag BL, Cano AV, Payne JL, McCandlish DM, Stoltzfus A. Mutation and Selection Induce Correlations between Selection Coefficients and Mutation Rates. The American Naturalist. 202: 534-557. PMID 37792926 DOI: 10.1086/726014  0.368
2023 Weinstein JY, Martí-Gómez C, Lipsh-Sokolik R, Hoch SY, Liebermann D, Nevo R, Weissman H, Petrovich-Kopitman E, Margulies D, Ivankov D, McCandlish DM, Fleishman SJ. Designed active-site library reveals thousands of functional GFP variants. Nature Communications. 14: 2890. PMID 37210560 DOI: 10.1038/s41467-023-38099-z  0.324
2023 Avizemer Z, Martí-Gómez C, Hoch SY, McCandlish DM, Fleishman SJ. Evolutionary paths that link orthogonal pairs of binding proteins. Research Square. PMID 37131620 DOI: 10.21203/rs.3.rs-2836905/v1  0.407
2023 Cano AV, Gitschlag BL, Rozhoňová H, Stoltzfus A, McCandlish DM, Payne JL. Mutation bias and the predictability of evolution. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 378: 20220055. PMID 37004719 DOI: 10.1098/rstb.2022.0055  0.347
2022 Zhou J, Wong MS, Chen WC, Krainer AR, Kinney JB, McCandlish DM. Higher-order epistasis and phenotypic prediction. Proceedings of the National Academy of Sciences of the United States of America. 119: e2204233119. PMID 36129941 DOI: 10.1073/pnas.2204233119  0.361
2022 Cano AV, Rozhoňová H, Stoltzfus A, McCandlish DM, Payne JL. Mutation bias shapes the spectrum of adaptive substitutions. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35145034 DOI: 10.1073/pnas.2119720119  0.409
2020 McCandlish DM, Lang GI. Evolution of Epistasis: Small Populations Go Their Separate Ways. Journal of Molecular Evolution. 88: 418-420. PMID 32435963 DOI: 10.1007/S00239-020-09950-4  0.345
2020 Zhou J, McCandlish DM. Minimum epistasis interpolation for sequence-function relationships. Nature Communications. 11: 1782. PMID 32286265 DOI: 10.1038/S41467-020-15512-5  0.448
2019 Storz JF, Natarajan C, Signore AV, Witt CC, McCandlish DM, Stoltzfus A. The role of mutation bias in adaptive molecular evolution: insights from convergent changes in protein function. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 374: 20180238. PMID 31154983 DOI: 10.1098/Rstb.2018.0238  0.493
2019 Kinney JB, McCandlish DM. Massively Parallel Assays and Quantitative Sequence-Function Relationships. Annual Review of Genomics and Human Genetics. PMID 31091417 DOI: 10.1146/Annurev-Genom-083118-014845  0.374
2018 McCandlish DM. Long-term evolution on complex fitness landscapes when mutation is weak. Heredity. PMID 30232363 DOI: 10.1038/S41437-018-0142-6  0.51
2018 Posfai A, Zhou J, Plotkin JB, Kinney JB, McCandlish DM. Selection for Protein Stability Enriches for Epistatic Interactions. Genes. 9. PMID 30134605 DOI: 10.3390/Genes9090423  0.375
2018 Otwinowski J, McCandlish DM, Plotkin JB. Inferring the shape of global epistasis. Proceedings of the National Academy of Sciences of the United States of America. 115: E7550-E7558. PMID 30037990 DOI: 10.1073/Pnas.1804015115  0.41
2017 Stoltzfus A, McCandlish DM. Mutational biases influence parallel adaptation. Molecular Biology and Evolution. PMID 28645195 DOI: 10.1093/Molbev/Msx180  0.471
2017 Bienvenu F, Akçay E, Legendre S, McCandlish DM. The genealogical decomposition of a matrix population model with applications to the aggregation of stages. Theoretical Population Biology. PMID 28476403 DOI: 10.1016/J.Tpb.2017.04.002  0.315
2016 Newberry MG, McCandlish DM, Plotkin JB. Assortative mating can impede or facilitate fixation of underdominant alleles. Theoretical Population Biology. PMID 27497738 DOI: 10.1016/J.Tpb.2016.07.003  0.429
2016 McCandlish DM, Shah P, Plotkin JB. Epistasis and the Dynamics of Reversion in Molecular Evolution. Genetics. PMID 27194749 DOI: 10.1534/Genetics.116.188961  0.376
2016 McCandlish DM, Plotkin JB. Transcriptional errors and the drift barrier. Proceedings of the National Academy of Sciences of the United States of America. PMID 26966235 DOI: 10.1073/Pnas.1601785113  0.422
2015 Stoltzfus A, McCandlish DM. Mutation-biased adaptation in Andean house wrens. Proceedings of the National Academy of Sciences of the United States of America. 112: 13753-4. PMID 26489650 DOI: 10.1073/Pnas.1518490112  0.479
2015 McCandlish DM, Otwinowski J, Plotkin JB. Detecting epistasis from an ensemble of adapting populations. Evolution; International Journal of Organic Evolution. PMID 26194030 DOI: 10.1111/Evo.12735  0.462
2015 Shah P, McCandlish DM, Plotkin JB. Contingency and entrenchment in protein evolution under purifying selection. Proceedings of the National Academy of Sciences of the United States of America. 112: E3226-35. PMID 26056312 DOI: 10.1073/Pnas.1412933112  0.526
2015 McCandlish DM, Epstein CL, Plotkin JB. Formal properties of the probability of fixation: identities, inequalities and approximations. Theoretical Population Biology. 99: 98-113. PMID 25450112 DOI: 10.1016/J.Tpb.2014.11.004  0.48
2014 McCandlish DM, Stoltzfus A. Modeling evolution using the probability of fixation: history and implications. The Quarterly Review of Biology. 89: 225-52. PMID 25195318 DOI: 10.1086/677571  0.423
2014 McCandlish DM, Epstein CL, Plotkin JB. The inevitability of unconditionally deleterious substitutions during adaptation. Evolution; International Journal of Organic Evolution. 68: 1351-64. PMID 24410330 DOI: 10.1111/Evo.12350  0.516
2013 McCandlish DM. On the findability of genotypes. Evolution; International Journal of Organic Evolution. 67: 2592-603. PMID 24033169 DOI: 10.1111/Evo.12128  0.445
2013 McCandlish DM, Rajon E, Shah P, Ding Y, Plotkin JB. The role of epistasis in protein evolution. Nature. 497: E1-2; discussion E2-. PMID 23719465 DOI: 10.1038/Nature12219  0.351
2011 McCandlish DM. Visualizing fitness landscapes. Evolution; International Journal of Organic Evolution. 65: 1544-58. PMID 21644947 DOI: 10.1111/J.1558-5646.2011.01236.X  0.4
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