Anil Korkut, Ph.D. - Publications

Affiliations: 
Columbia University, New York, NY 
Area:
biological macromolecules

17 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Zhao M, Scott S, Evans KW, Yuca E, Saridogan T, Zheng X, Wang H, Korkut A, Cruz Pico CX, Demirhan ME, Kirby B, Kopetz S, Diala I, Lalani AS, Piha-Paul S, et al. Combining neratinib with CDK4/6, mTOR and MEK inhibitors in models of HER2-positive cancer. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 33414137 DOI: 10.1158/1078-0432.CCR-20-3017  0.44
2020 Yuan B, Shen C, Luna A, Korkut A, Marks DS, Ingraham J, Sander C. CellBox: Interpretable Machine Learning for Perturbation Biology with Application to the Design of Cancer Combination Therapy. Cell Systems. PMID 33373583 DOI: 10.1016/j.cels.2020.11.013  0.48
2020 Zhao W, Li J, Chen MM, Luo Y, Ju Z, Nesser NK, Johnson-Camacho K, Boniface CT, Lawrence Y, Pande NT, Davies MA, Herlyn M, Muranen T, Zervantonakis IK, von Euw E, ... ... Korkut A, et al. Large-Scale Characterization of Drug Responses of Clinically Relevant Proteins in Cancer Cell Lines. Cancer Cell. PMID 33157050 DOI: 10.1016/j.ccell.2020.10.008  0.36
2020 Zhang W, Feng C, Jiang H. Novel Target for Treating Alzheimer's Diseases: Crosstalk between the Nrf2 Pathway and Autophagy. Ageing Research Reviews. 101207. PMID 33144123 DOI: 10.1016/j.arr.2020.101207  0.76
2020 Nyman E, Stein RR, Jing X, Wang W, Marks B, Zervantonakis IK, Korkut A, Gauthier NP, Sander C. Perturbation biology links temporal protein changes to drug responses in a melanoma cell line. Plos Computational Biology. 16: e1007909. PMID 32667922 DOI: 10.1371/journal.pcbi.1007909  0.48
2018 Korkut A, Zaidi S, Kanchi RS, Rao S, Gough NR, Schultz A, Li X, Lorenzi PL, Berger AC, Robertson G, Kwong LN, Datto M, Roszik J, Ling S, Ravikumar V, et al. A Pan-Cancer Analysis Reveals High-Frequency Genetic Alterations in Mediators of Signaling by the TGF-β Superfamily. Cell Systems. PMID 30268436 DOI: 10.1016/j.cels.2018.08.010  0.36
2018 Yang W, Bam R, Catalano VJ, Chalifoux WA. Highly Regioselective Domino Benzannulation Reaction of Buta-1,3-diynes to Construct Irregular Nanographenes. Angewandte Chemie (International Ed. in English). PMID 30117244 DOI: 10.1002/anie.201808043  0.48
2018 Berger AC, Korkut A, Kanchi RS, Hegde AM, Lenoir W, Liu W, Liu Y, Fan H, Shen H, Ravikumar V, Rao A, Schultz A, Li X, Sumazin P, Williams C, et al. A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast Cancers. Cancer Cell. PMID 29622464 DOI: 10.1016/j.ccell.2018.03.014  0.36
2015 Miller ML, Reznik E, Gauthier NP, Aksoy BA, Korkut A, Gao J, Ciriello G, Schultz N, Sander C. Pan-Cancer Analysis of Mutation Hotspots in Protein Domains. Cell Systems. 1: 197-209. PMID 27135912 DOI: 10.1016/j.cels.2015.08.014  0.48
2015 Korkut A, Wang W, Demir E, Aksoy BA, Jing X, Molinelli EJ, Babur Ö, Bemis DL, Onur Sumer S, Solit DB, Pratilas CA, Sander C. Perturbation biology nominates upstream-downstream drug combinations in RAF inhibitor resistant melanoma cells. Elife. 4. PMID 26284497 DOI: 10.7554/eLife.04640  0.92
2015 Miller ML, Reznik E, Gauthier NP, Aksoy BA, Korkut A, Gao J, Ciriello G, Schultz N, Sander C. Pan-Cancer Analysis of Mutation Hotspots in Protein Domains Cell Systems. 1: 197-209. DOI: 10.1016/j.cels.2015.08.014  0.92
2014 Kaushik P, Molinelli EJ, Miller ML, Wang W, Korkut A, Liu W, Ju Z, Lu Y, Mills G, Sander C. Spatial normalization of reverse phase protein array data. Plos One. 9: e97213. PMID 25501559 DOI: 10.1371/journal.pone.0097213  0.92
2013 Molinelli EJ, Korkut A, Wang W, Miller ML, Gauthier NP, Jing X, Kaushik P, He Q, Mills G, Solit DB, Pratilas CA, Weigt M, Braunstein A, Pagnani A, Zecchina R, et al. Perturbation biology: inferring signaling networks in cellular systems. Plos Computational Biology. 9: e1003290. PMID 24367245 DOI: 10.1371/journal.pcbi.1003290  0.92
2013 Miller ML, Molinelli EJ, Nair JS, Sheikh T, Samy R, Jing X, He Q, Korkut A, Crago AM, Singer S, Schwartz GK, Sander C. Drug synergy screen and network modeling in dedifferentiated liposarcoma identifies CDK4 and IGF1R as synergistic drug targets. Science Signaling. 6: ra85. PMID 24065146 DOI: 10.1126/scisignal.2004014  0.92
2012 Korkut A, Hendrickson WA. Structural Plasticity and Conformational Transitions of HIV Envelope Glycoprotein gp120 Plos One. 7. PMID 23300605 DOI: 10.1371/journal.pone.0052170  0.92
2009 Korkut A, Hendrickson WA. A force field for virtual atom molecular mechanics of proteins Proceedings of the National Academy of Sciences of the United States of America. 106: 15667-15672. PMID 19717427 DOI: 10.1073/pnas.0907674106  0.92
2009 Korkut A, Hendrickson WA. Computation of conformational transitions in proteins by virtual atom molecular mechanics as validated in application to adenylate kinase. Proceedings of the National Academy of Sciences of the United States of America. 106: 15673-8. PMID 19706894 DOI: 10.1073/pnas.0907684106  0.92
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