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Yuval Ebenstein - Publications

Affiliations: 
2014-2015 Chemistry Tel Aviv Univeristy, Tel Aviv-Yafo, Tel Aviv District, Israel 
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46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Torchinsky D, Michaeli Y, Gassman NR, Ebenstein Y. Simultaneous detection of multiple DNA damage types by multi-colour fluorescent labelling. Chemical Communications (Cambridge, England). 55: 11414-11417. PMID 31482872 DOI: 10.1039/c9cc05198h  0.8
2019 Jain N, Shahal T, Gabrieli T, Gilat N, Torchinsky D, Michaeli Y, Vogel V, Ebenstein Y. Global Modulation in DNA Epigenetics during Pro-Inflammatory Macrophage Activation. Epigenetics. PMID 31262215 DOI: 10.1080/15592294.2019.1638700  0.4
2019 Margalit S, Avraham S, Shahal T, Michaeli Y, Gilat N, Magod P, Caspi M, Loewenstein S, Lahat G, Friedmann-Morvinski D, Kariv R, Rosin-Arbesfeld R, Zirkin S, Ebenstein Y. 5-Hydroxymethylcytosine as a clinical biomarker: Fluorescence-based assay for high-throughput epigenetic quantification in human tissues. International Journal of Cancer. PMID 31211411 DOI: 10.1002/ijc.32519  0.4
2019 Sharim H, Grunwald A, Gabrieli T, Michaeli Y, Margalit S, Torchinsky D, Arielly R, Nifker G, Juhasz M, Gularek F, Almalvez M, Dufault B, Chandra SS, Liu A, Bhattacharya S, ... ... Ebenstein Y, et al. Long-read single-molecule maps of the functional methylome. Genome Research. PMID 30846530 DOI: 10.1101/gr.240739.118  0.52
2019 Wu S, Jeffet J, Grunwald A, Sharim H, Gilat N, Torchinsky D, Zheng Q, Zirkin S, Xu L, Ebenstein Y. Microfluidic DNA combing for parallel single-molecule analysis. Nanotechnology. 30: 045101. PMID 30485249 DOI: 10.1088/1361-6528/aaeddc  0.4
2018 Heck C, Michaeli Y, Bald I, Ebenstein Y. Analytical epigenetics: single-molecule optical detection of DNA and histone modifications. Current Opinion in Biotechnology. 55: 151-158. PMID 30326408 DOI: 10.1016/j.copbio.2018.09.006  0.4
2018 Gabrieli T, Sharim H, Nifker G, Jeffet J, Shahal T, Arielly R, Levi-Sakin M, Hoch L, Arbib N, Michaeli Y, Ebenstein Y. Epigenetic Optical Mapping of 5-Hydroxymethylcytosine in Nanochannel Arrays. Acs Nano. PMID 29924591 DOI: 10.1021/acsnano.8b03023  0.52
2018 Gabrieli T, Sharim H, Fridman D, Arbib N, Michaeli Y, Ebenstein Y. Selective nanopore sequencing of human BRCA1 by Cas9-assisted targeting of chromosome segments (CATCH). Nucleic Acids Research. PMID 29788371 DOI: 10.1093/nar/gky411  0.4
2018 Holton NW, Ebenstein Y, Gassman NR. Broad spectrum detection of DNA damage by Repair Assisted Damage Detection (RADD). Dna Repair. 66: 42-49. PMID 29723708 DOI: 10.1016/j.dnarep.2018.04.007  0.8
2017 Arielly R, Ebenstein Y. Irys Extract. Bioinformatics (Oxford, England). PMID 29036307 DOI: 10.1093/bioinformatics/btx437  0.52
2017 Gilat N, Tabachnik T, Shwartz A, Shahal T, Torchinsky D, Michaeli Y, Nifker G, Zirkin S, Ebenstein Y. Single-molecule quantification of 5-hydroxymethylcytosine for diagnosis of blood and colon cancers. Clinical Epigenetics. 9: 70. PMID 28725280 DOI: 10.1186/s13148-017-0368-9  0.4
2016 Shahal T, Green O, Hananel U, Michaeli Y, Shabat D, Ebenstein Y. Simple and cost-effective fluorescent labeling of 5-hydroxymethylcytosine. Methods and Applications in Fluorescence. 4: 044003. PMID 28192296 DOI: 10.1088/2050-6120/4/4/044003  0.4
2016 Jeffet J, Kobo A, Su T, Grunwald A, Green O, Nilsson AN, Eisenberg E, Ambjornsson T, Westerlund F, Weinhold E, Shabat D, Purohit PK, Ebenstein Y. Super-Resolution Genome Mapping in Silicon Nanochannels. Acs Nano. PMID 27646634 DOI: 10.1021/acsnano.6b05398  0.36
2016 Gilboa T, Torfstein C, Juhasz M, Grunwald A, Ebenstein Y, Weinhold E, Meller A. Single-Molecule DNA Methylation Quantification Using Electro-optical Sensing in Solid-State Nanopores. Acs Nano. PMID 27580095 DOI: 10.1021/acsnano.6b04748  0.36
2015 Torchinsky D, Ebenstein Y. Sizing femtogram amounts of dsDNA by single-molecule counting. Nucleic Acids Research. PMID 26365235 DOI: 10.1093/nar/gkv904  0.4
2015 Jiang W, Zhao X, Gabrieli T, Lou C, Ebenstein Y, Zhu TF. Cas9-Assisted Targeting of CHromosome segments CATCH enables one-step targeted cloning of large gene clusters. Nature Communications. 6: 8101. PMID 26323354 DOI: 10.1038/ncomms9101  0.96
2015 Nifker G, Levy-Sakin M, Berkov-Zrihen Y, Shahal T, Gabrieli T, Fridman M, Ebenstein Y. One-Pot Chemoenzymatic Cascade for Labeling of the Epigenetic Marker 5-Hydroxymethylcytosine. Chembiochem : a European Journal of Chemical Biology. PMID 26147952 DOI: 10.1002/cbic.201500329  0.96
2015 Grunwald A, Dahan M, Giesbertz A, Nilsson A, Nyberg LK, Weinhold E, Ambjörnsson T, Westerlund F, Ebenstein Y. Bacteriophage strain typing by rapid single molecule analysis. Nucleic Acids Research. PMID 26019180 DOI: 10.1093/nar/gkv563  0.36
2015 Berger O, Adler-Abramovich L, Levy-Sakin M, Grunwald A, Liebes-Peer Y, Bachar M, Buzhansky L, Mossou E, Forsyth VT, Schwartz T, Ebenstein Y, Frolow F, Shimon LJ, Patolsky F, Gazit E. Light-emitting self-assembled peptide nucleic acids exhibit both stacking interactions and Watson-Crick base pairing. Nature Nanotechnology. 10: 353-60. PMID 25775151 DOI: 10.1038/nnano.2015.27  0.96
2014 Shahal T, Gilat N, Michaeli Y, Redy-Keisar O, Shabat D, Ebenstein Y. Spectroscopic quantification of 5-hydroxymethylcytosine in genomic DNA. Analytical Chemistry. 86: 8231-7. PMID 25072105 DOI: 10.1021/ac501609d  0.96
2014 Zirkin S, Fishman S, Sharim H, Michaeli Y, Don J, Ebenstein Y. Lighting up individual DNA damage sites by in vitro repair synthesis. Journal of the American Chemical Society. 136: 7771-6. PMID 24802414 DOI: 10.1021/ja503677n  0.4
2014 Levy-Sakin M, Grunwald A, Kim S, Gassman NR, Gottfried A, Antelman J, Kim Y, Ho SO, Samuel R, Michalet X, Lin RR, Dertinger T, Kim AS, Chung S, Colyer RA, ... ... Ebenstein Y, et al. Toward single-molecule optical mapping of the epigenome. Acs Nano. 8: 14-26. PMID 24328256 DOI: 10.1021/nn4050694  0.96
2014 Michaeli Y, Gabrieli T, Ebenstein Y. Toward epigenetic mapping of human chromosomes in nanochannel arrays 18th International Conference On Miniaturized Systems For Chemistry and Life Sciences, Microtas 2014. 2538-2539.  0.4
2013 Shaul P, Frenkel M, Goldstein EB, Mittelman L, Grunwald A, Ebenstein Y, Tsarfaty I, Fridman M. The structure of anthracycline derivatives determines their subcellular localization and cytotoxic activity. Acs Medicinal Chemistry Letters. 4: 323-8. PMID 24900668 DOI: 10.1021/ml3002852  0.96
2013 Michaeli Y, Shahal T, Torchinsky D, Grunwald A, Hoch R, Ebenstein Y. Optical detection of epigenetic marks: sensitive quantification and direct imaging of individual hydroxymethylcytosine bases. Chemical Communications (Cambridge, England). 49: 8599-601. PMID 23756466 DOI: 10.1039/c3cc42543f  0.4
2012 Xu L, Feng Z, Sinha D, Ducos B, Ebenstein Y, Tadmor AD, Gauron C, Le Saux T, Lin S, Weiss S, Vriz S, Jullien L, Bensimon D. Spatiotemporal manipulation of retinoic acid activity in zebrafish hindbrain development via photo-isomerization. Development (Cambridge, England). 139: 3355-62. PMID 22874920 DOI: 10.1242/dev.077776  0.96
2012 Michaeli Y, Ebenstein Y. Channeling DNA for optical mapping. Nature Biotechnology. 30: 762-3. PMID 22871713 DOI: 10.1038/nbt.2324  0.4
2012 Kim S, Gottfried A, Lin RR, Dertinger T, Kim AS, Chung S, Colyer RA, Weinhold E, Weiss S, Ebenstein Y. Enzymatically incorporated genomic tags for optical mapping of DNA-binding proteins. Angewandte Chemie (International Ed. in English). 51: 3578-81. PMID 22344826 DOI: 10.1002/anie.201107714  0.96
2011 Iyer G, Pinaud F, Xu J, Ebenstein Y, Li J, Chang J, Dahan M, Weiss S. Aromatic aldehyde and hydrazine activated peptide coated quantum dots for easy bioconjugation and live cell imaging. Bioconjugate Chemistry. 22: 1006-11. PMID 21553893 DOI: 10.1021/bc100593m  0.96
2010 Ebenstein Y, Bentolila LA. Single-molecule detection: focusing on the objective. Nature Nanotechnology. 5: 99-100. PMID 20130586 DOI: 10.1038/nnano.2010.10  0.76
2010 Ebenstein Y, Gassman N, Weiss S. Mapping transcription factors on extended dna: A single molecule approach Springer Series in Chemical Physics. 96: 203-216. DOI: 10.1007/978-3-642-02597-6_11  0.88
2009 Antelman J, Ebenstein Y, Dertinger T, Michalet X, Weiss S. Suppression of quantum dot blinking in DTT-doped polymer films. The Journal of Physical Chemistry. C, Nanomaterials and Interfaces. 113: 11541-11545. PMID 20161096 DOI: 10.1021/jp811078e  0.88
2009 Ebenstein Y, Gassman N, Kim S, Weiss S. Combining atomic force and fluorescence microscopy for analysis of quantum-dot labeled protein-DNA complexes. Journal of Molecular Recognition : Jmr. 22: 397-402. PMID 19452448 DOI: 10.1002/jmr.956  0.96
2009 Ebenstein Y, Gassman N, Kim S, Antelman J, Kim Y, Ho S, Samuel R, Michalet X, Weiss S. Lighting up individual DNA binding proteins with quantum dots. Nano Letters. 9: 1598-603. PMID 19290670 DOI: 10.1021/nl803820b  0.96
2009 Bentolila LA, Ebenstein Y, Weiss S. Quantum dots for in vivo small-animal imaging. Journal of Nuclear Medicine : Official Publication, Society of Nuclear Medicine. 50: 493-6. PMID 19289434 DOI: 10.2967/jnumed.108.053561  0.88
2009 Schipper ML, Iyer G, Koh AL, Cheng Z, Ebenstein Y, Aharoni A, Keren S, Bentolila LA, Li J, Rao J, Chen X, Banin U, Wu AM, Sinclair R, Weiss S, et al. Particle size, surface coating, and PEGylation influence the biodistribution of quantum dots in living mice. Small (Weinheim An Der Bergstrasse, Germany). 5: 126-34. PMID 19051182 DOI: 10.1002/smll.200800003  0.96
2006 Ebenstein Y, Yoskovitz E, Costi R, Aharoni A, Banin U. Interaction of scanning probes with semiconductor nanocrystals; physical mechanism and basis for near-field optical imaging. The Journal of Physical Chemistry. A. 110: 8297-303. PMID 16821813 DOI: 10.1021/jp056229o  0.96
2005 Mokari T, Sertchook H, Aharoni A, Ebenstein Y, Avnir D, Banin U. Nano@micro: General method for entrapment of nanocrystals in sol-gel-derived composite hydrophobic silica spheres Chemistry of Materials. 17: 258-263. DOI: 10.1021/cm048477n  0.96
2004 Nahum E, Ebenstein Y, Aharoni A, Mokari T, Banin U, Shimoni N, Millo O. Transport and Charging in Single Semiconductor Nanocrystals Studied by Conductance Atomic Force Microscopy Nano Letters. 4: 103-108. DOI: 10.1021/nl034928b  0.96
2004 Rothenberg E, Ebenstein Y, Kazes M, Banin U. Direct observation of highly polarized non-linear absorption dipole of single semiconductor quantum rods Materials Research Society Symposium Proceedings. 818: 171-176.  0.96
2004 Rothenberg E, Ebenstein Y, Kazes M, Banin U. Two-photon fluorescence microscopy of single semiconductor quantum rods: Direct observation of highly polarized nonlinear absorption dipole Journal of Physical Chemistry B. 108: 2797-2800.  0.96
2004 Ebenstein Y, Mokari T, Banin U. Quantum-dot-functionalized scanning probes for fluorescence-energy-transfer-based microscopy Journal of Physical Chemistry B. 108: 93-99.  0.96
2003 Kazes M, Lewis DY, Ebenstein Y, Mokari T, Banin U. Lasing from CdSe/ZnS quantum rods in a cylindrical microcavity Materials Research Society Symposium - Proceedings. 789: 11-16.  0.96
2002 Ebenstein Y, Mokari T, Banin U. Fluorescence quantum yield of CdSe/ZnS nanocrystals investigated by correlated atomic-force and single-particle fluorescence microscopy Applied Physics Letters. 80: 4033-4035. DOI: 10.1063/1.1482785  0.96
2002 Ebenstein Y, Nahum E, Banin U. Tapping Mode Atomic Force Microscopy for Nanoparticle Sizing: Tip-Sample Interaction Effects Nano Letters. 2: 945-950. DOI: 10.1021/nl025673p  0.96
2002 Kazes M, Lewis DY, Ebenstein Y, Mokari T, Banin U. Lasing from semiconductor quantum rods in a cylindrical microcavity Advanced Materials. 14: 317-321. DOI: 10.1002/1521-4095(20020219)14:4<317::AID-ADMA317>3.0.CO;2-U  0.96
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